Hi, I just noticed that you have a Gna! account now, but that was not necessary. Submitting a bug report can be done anonymously. Also, you submitted a support request, whereas this is more a bug than a request for a feature. It's ok though, I have the files needed to debug.
Regards, Edward On 1 July 2011 13:19, Edward d'Auvergne <[email protected]> wrote: > Dear Aldino, > > Thank you for the bug report and data, this will definitely help with > the debugging (well, without it I couldn't start debugging). I'm > currently working on a special branch where I am redesigning the GUI > completely for solving many bugs in the GUI. This might take a while > to complete though, and the code is not very stable for now. I will > see if this bug is solvable with a simple fix, or if there are > fundamental design issues that can only be resolved with the new > design. Hopefully I'll have some good news soon. > > Cheers, > > Edward > > > On 1 July 2011 12:49, Aldino <[email protected]> wrote: >> Dear Edward, >> hello again! >> >> I have already manage to submit a bug report with the respective attached >> files (https://gna.org/support/index.php?2764) >> >> Looking forward for a resolution! >> >> Cheers, >> Aldino >> >> -----Mensagem Original----- From: Aldino >> Sent: Friday, July 01, 2011 10:47 AM >> To: Edward d'Auvergne >> Subject: Re: R1 and R2 calculation error >> >> Dear Edward, >> sorry for no having posted the bug report yet but I'm having some problems >> with the GNA account... >> Because de confirmation mail went to the Spam, I haven't confirmed, so they >> deleted it... >> Now I have created a new one! >> >> In the mean wile the most I can do, if you think it appropriate, is send you >> (or to the Relax mailling list) the representative files in attch. >> >> Best regards, >> Aldino >> >> >> -----Mensagem Original----- From: Edward d'Auvergne >> Sent: Monday, June 27, 2011 10:08 AM >> To: Aldino >> Cc: [email protected] >> Subject: Re: R1 and R2 calculation error >> >> Hi, >> >> Thank you for the information. I've been looking into this problem, >> but it is hard to diagnose. There has been a bug triggered somewhere >> in the setup of the data (I think) but as this is running in a thread, >> the relax error message is not being caught and reported. That is the >> meaning of "Unhandled exception in thread". So the real cause is >> lost. There is a way of bypassing this by using the debug flag. I.e. >> running relax as: >> >> $ relax -g --debug >> >> This will cause the real source of the error to be printed in the >> terminal/shell in which you launched relax. It would be very useful >> if you were to report this in a bug report though, including a tiny, >> randomised data set which still triggers the bug >> (https://gna.org/bugs/?func=additem&group=relax). Having the data >> will allow me to very quickly reproduce the bug and hopefully have a >> fix within ~5 min. >> >> Cheers, >> >> Edward >> >> >> >> On 27 June 2011 10:39, Aldino <[email protected]> wrote: >>> >>> Dear Edward, >>> >>> once again, thank you for your reply. This time I´ll make sure the message >>> goes to the mailing list. >>> So, here it goes: >>> >>> I am using the latest Relax version (3.1.10) >>> >>> Below I send the relax info (also in attach): >>> >>> relax 1.3.10 >>> >>> Molecular dynamics by NMR data analysis >>> >>> Copyright (C) 2001-2006 Edward d'Auvergne >>> Copyright (C) 2006-2011 the relax development team >>> >>> This is free software which you are welcome to modify and redistribute >>> under >>> the conditions of the >>> GNU General Public License (GPL). This program, including all modules, is >>> licensed under the GPL >>> and comes with absolutely no warranty. For details type 'GPL' within the >>> relax prompt. >>> >>> Assistance in using the relax prompt and scripting interface can be >>> accessed >>> by typing 'help' within >>> the prompt. >>> >>> Hardware information: >>> Machine: i686 >>> Processor: i686 >>> >>> System information: >>> System: Linux >>> Release: 2.6.38-8-generic >>> Version: #42-Ubuntu SMP Mon Apr 11 03:31:50 UTC 2011 >>> GNU/Linux version: Ubuntu 11.04 natty >>> Distribution: Ubuntu 11.04 natty >>> Full platform string: >>> Linux-2.6.38-8-generic-i686-with-Ubuntu-11.04-natty >>> >>> Software information: >>> Architecture: 32bit ELF >>> Python version: 2.7.1+ >>> Python branch: tags/r271 >>> Python build: r271:86832, Apr 11 2011 18:05:24 >>> Python compiler: GCC 4.5.2 >>> Python implementation: CPython >>> Python revision: 86832 >>> Numpy version: 1.5.1 >>> Libc version: glibc 2.4 >>> >>> Python packages (most are optional): >>> >>> Package Installed Version Path >>> minfx True Unknown >>> /home/aldino/Software/relax-1.3.10/minfx >>> bmrblib False >>> numpy True 1.5.1 >>> /usr/lib/pymodules/python2.7/numpy >>> ScientificPython True 2.8 >>> /usr/lib/python2.7/dist-packages/Scientific >>> wxPython True >>> mpi4py False >>> epydoc False >>> optparse True 1.5.3 >>> /usr/lib/python2.7/optparse.pyc >>> Numeric False >>> readline True >>> /usr/lib/python2.7/lib-dynload/readline.so >>> profile True >>> /usr/lib/python2.7/profile.pyc >>> bz2 True >>> /usr/lib/python2.7/lib-dynload/bz2.so >>> gzip True >>> /usr/lib/python2.7/gzip.pyc >>> os.devnull True >>> /usr/lib/python2.7/os.pyc >>> >>> Compiled relax C modules: >>> Relaxation curve fitting: True >>> >>> >>> In the mean wile I will try to submit a bug report for this. >>> >>> Thanks, >>> Aldino >>> >>> -----Mensagem Original----- From: Edward d'Auvergne >>> Sent: Wednesday, June 22, 2011 3:35 PM >>> To: Aldino >>> Cc: [email protected] >>> Subject: Re: R1 and R2 calculation error >>> >>> Dear Aldino, >>> >>> Welcome to the relax mailing lists. The problem you are seeing could >>> possibly be related to an older version of relax. Which version are >>> you using? Could you copy and paste the output of: >>> >>> $ relax --info >>> >>> If you are using version 1.3.9 or earlier, I would recommend trying >>> out 1.3.10 and see if the problem is solved. If you are using version >>> 1.3.10, you have encountered a new bug. If so, would you be able to >>> submit a bug report for this? See >>> https://gna.org/bugs/?func=additem&group=relax. I would recommend >>> including a minimal data set (only data for one or two spins, >>> randomised if you would like to keep it private) and instructions for >>> how to trigger the bug. >>> >>> Cheers, >>> >>> Edward >>> >>> >>> >>> On 21 June 2011 18:05, Aldino <[email protected]> wrote: >>>> >>>> Hi! >>>> >>>> I have just started using RelaxGUI and I’m having some problems when >>>> trying >>>> to calculate R1 and R2. >>>> >>>> For the steady-state NOE everything is alright but when I start the R1 >>>> calculation I get: >>>> >>>> >>>> >>>> “Starting R1 calculation >>>> >>>> Unhandled exception in thread started by <bound method >>>> Auto_r1.execute_thread of <gui.analyses.auto_r1.Auto_r1 instance at >>>> 0xa47556c>>” >>>> >>>> >>>> >>>> The same thing when trying to calculate R2... >>>> >>>> >>>> >>>> “Starting R2 calculation >>>> >>>> Unhandled exception in thread started by <bound method >>>> Auto_r2.execute_thread of <gui.analyses.auto_r2.Auto_r2 instance at >>>> 0xa46f4cc>>” >>>> >>>> >>>> >>>> Please help... >>>> Thanks, >>>> Aldino >>>> >>>> >>>> >>>> ______________________________________________ >>>> Aldino Viegas, PhD Student >>>> Dep. Química, REQUIMTE >>>> Faculdade de Ciências e Tecnologia >>>> Universidade Nova de Lisboa >>>> 2829-516 Caparica, Portugal >>>> >>>> Tlf. +351 212948300 >>>> Ext. 10900 Lab. 106-A >>>> [email protected] >>>> _______________________________________________ >>>> relax (http://nmr-relax.com) >>>> >>>> This is the relax-users mailing list >>>> [email protected] >>>> >>>> To unsubscribe from this list, get a password >>>> reminder, or change your subscription options, >>>> visit the list information page at >>>> https://mail.gna.org/listinfo/relax-users >>>> >>>> >>> >> > _______________________________________________ relax (http://nmr-relax.com) This is the relax-users mailing list [email protected] To unsubscribe from this list, get a password reminder, or change your subscription options, visit the list information page at https://mail.gna.org/listinfo/relax-users
