Sorry, the first answer is actually at https://mail.gna.org/public/relax-users/2012-03/msg00048.html.
Regards, Edward On 23 March 2012 14:35, Edward d'Auvergne <[email protected]> wrote: > Hi, > > Here is the answer for your second question (the first answer is at > https://mail.gna.org/public/relax-users/2012-03/msg00047.html). This > appears to be a problem with the Lion version of Mac OS X. > > For this issue, would you be able to create a bug report? That would > help in sorting out the problem as it is a place to attach files/logs > to and to keep track of everything. It also will be useful in the > future for other relax users who encounter the same or a similar bug, > or if the bug returns. The bug submission page is > http://gna.org/bugs/?func=additem&group=relax. It would be useful to > include all the error messages you see in this report. The more > information, the better. Other useful information would be the output > of 'relax --info' and 'relax -g', especially if these give errors. > You can capture all of the output by using the commands: > > $ ./relax --info --tee info_log > $ ./relax --gui --tee gui_log > > and then attach the 'info_log' and 'gui_log' files to the bug report. Cheers! > > As for the DMG (disk image) file at > http://www.nmr-relax.com/download.html, this is fully self contained. > This disk image includes the following: > - Python > - numpy > - readline > - scipy > - wxPython > - relax > - minfx (http://gna.org/projects/minfx, but bundled with all relax > distribution packages) > - bmrblib (http://gna.org/projects/bmrblib, but bundled with all > relax distribution packages) > > It also contains the full Mac application framework. And it is a > universal binary compiled for the fat3 targets (i386, x86-64 and > ppc64). That's why the file is so large (currently ~120 Mb). It will > not use anything you have installed on your system - it already comes > with everything it will ever need and so has zero dependencies. It > will never touch anything you have installed. > > If you use the source distributions though, then you will require to > have Python, numpy, wxPython, etc. installed on the system. When you > run relax in a terminal on your Mac as: > > $ ./relax > > Then relax will fall back to using your Python, numpy, etc. that you > have installed. Therefore the errors you get running relax in this > way should be unrelated to those you see from the DMG file. Hence I > would assume that the error is in the Mac application framework! I > will have to check my Mac setup to see what software, and which > version, goes into the DMG file and also do some Google searching for > this. I will get back to you once I know more about this Mac problem. > The additional information in the bug report would be of significant > help too. > > Cheers, > > Edward > > > > On 23 March 2012 11:09, Martin Ballaschk <[email protected]> wrote: >> Dear relax-users, >> >> I am just beginning to record and analyze relaxation data for MF analysis. >> So far we collected data at 600 MHz, and a second data set at 750MHz is >> planned. >> >> I have two questions I hope you can help me with: >> >> 1) Temperature calibration >> >> We use single-scan interleaving to account for a constant temperature during >> the whole experimental series. We also use methanol to calibrate the >> spectrometer's temperature sensors. As we found out, every magnet is >> different and the on-screen parameters cannot be trusted. We have tables >> where This procedure is not done with the T2 measurements in mind, however. >> >> Isn't it also important that R1 and R2 measurements have the same >> temperature – how do you check for that? >> >> How can I check differences in sample heating between different magnets due >> to different air-flow etc? How to compensate for these temperature >> differences? Do I need different pulse programs that account for temperature >> differences for every spectrometer? Or is the difference insignificant once >> the spectrometers have been calibrated? >> >> >> 2) >> In Mac OS X ("Lion", 10.7.3), the self-contained relax Application bundle is >> crashing and is giving just an "relax error" and the option to "terminate" >> or "open the Console". >> >> I can run the “relax” script which is sitting inside >> relax.app/Contents/Resources/ and I get a prompt, but only after installing >> numpy via Macports. If I don't, relax complains that numpy is not installed. >> >> After installing wxPython 2.9 via the official installer "./relax" -g is >> attempting to start (I can see the splash screen), but then halts with the >> errors. >> >> Interestingly, I found out today that it seems to run just fine if I run the >> relax binary in Contents/MacOS by dropping it onto Terminal.app! >> (I did not test this without numpy and wXPython seperately installed.) >> >> What's your experience? What do you think is broken – my system (10.7) or >> something inside the application bundle? >> >> >> >> Cheers >> Martin >> >> *** >> >> RELAX ERROR MESSAGES FROM THE CONSOLE >> >> 15.03.12 15:19:15,538 relax: relax Error >> 15.03.12 15:19:17,667 com.apple.launchd.peruser.501: >> ([0x0-0x14e14e].com.nmr-relax.relax[70595]) Exited with code: 255 >> 15.03.12 15:19:22,227 [0x0-0x14f14f].com.nmr-relax.relax: <_FuncPtr object at >> 0x101b0dc80> >> 15.03.12 15:19:22,227 [0x0-0x14f14f].com.nmr-relax.relax: Traceback (most >> recent call last): >> 15.03.12 15:19:22,227 [0x0-0x14f14f].com.nmr-relax.relax: File >> "/Applications/relax.app/Contents/Resources/__boot__.py", line 179, in >> <module> >> 15.03.12 15:19:22,227 [0x0-0x14f14f].com.nmr-relax.relax: >> _argv_emulation() >> 15.03.12 15:19:22,227 [0x0-0x14f14f].com.nmr-relax.relax: File >> "/Applications/relax.app/Contents/Resources/__boot__.py", line 177, in >> _argv_emulation >> 15.03.12 15:19:22,227 [0x0-0x14f14f].com.nmr-relax.relax: >> _get_argvemulator().mainloop() >> 15.03.12 15:19:22,227 [0x0-0x14f14f].com.nmr-relax.relax: File >> "/Applications/relax.app/Contents/Resources/__boot__.py", line 101, in >> mainloop >> 15.03.12 15:19:22,227 [0x0-0x14f14f].com.nmr-relax.relax: stoptime = >> Evt.TickCount() + timeout >> 15.03.12 15:19:22,227 [0x0-0x14f14f].com.nmr-relax.relax: AttributeError: >> 'module' object has no attribute 'TickCount' >> >> -- >> Martin Ballaschk >> AG Schmieder >> Leibniz-Institut für Molekulare Pharmakologie >> Robert-Rössle-Str. 10 >> 13125 Berlin >> [email protected] >> Tel.: +49-30-94793-234/315 >> Büro: A 1.26 >> Labor: C 1.10 >> >> >> _______________________________________________ >> relax (http://nmr-relax.com) >> >> This is the relax-users mailing list >> [email protected] >> >> To unsubscribe from this list, get a password >> reminder, or change your subscription options, >> visit the list information page at >> https://mail.gna.org/listinfo/relax-users _______________________________________________ relax (http://nmr-relax.com) This is the relax-users mailing list [email protected] To unsubscribe from this list, get a password reminder, or change your subscription options, visit the list information page at https://mail.gna.org/listinfo/relax-users
