Hi, I've seen it and I'm now trying to get my hands on a Lion to replicate this. In the mean time, I'll go through the logs and see what I can determine from that. One other useful bit of information would be from running relax in GUI mode using the Python interpreter that I have built into the DMG file. You can do this by typing in a terminal something like:
$ ./relax.app/Contents/MacOS/python ./relax.app/Contents/MacOS/relax -g --tee log This assumes you are in the directory where the relax.app directory is located. Thank you, Edward On 2 April 2012 10:15, Martin Ballaschk <[email protected]> wrote: > Hi, > > please find the bug report #19606 at https://gna.org/bugs/index.php?19606 > > Cheers > Martin > > > On 29.03.2012, at 18:10, Edward d'Auvergne wrote: > >> Hi, >> >> Unfortunately not yet - I'm still trying to work out how I can >> reproduce this problem! On my system, also 10.6.8, the relax DMG file >> execution is working fine. So I have to work out what is breaking it. >> Development on the Mac is difficult though, and it takes much longer >> than on other systems. Are you using the DMG distribution file as >> well? Could you give more information (copy and paste messages, etc.) >> about the problem? The more information I have, the easier it will be >> for me to find the exact point of failure and fix it. Also, what is >> your system architecture? It should be one of ppc, ppc64, i386, or >> x86_64. If you or Martin could create a bug report with all >> information possible, this would also be of great help (see >> https://gna.org/bugs/?func=additem&group=relax). >> >> Cheers, >> >> Edward >> >> >> On 29 March 2012 18:02, Andrew Olson <[email protected]> wrote: >>> Was the MacOSX relax error ever solved? I am running MacOS 10.6.8 and am >>> getting the same error. >>> >>> ________________________________ >>> From: Edward d'Auvergne <[email protected]> >>> To: Martin Ballaschk <[email protected]> >>> Cc: [email protected] >>> Sent: Friday, March 23, 2012 10:11 AM >>> Subject: Re: Temperature calibration & relax @ Mac OS X 10.7.3 „Lion“ >>> >>> Hi, >>> >>> Sorry, I forgot to mention how you perform the temperature >>> calibration. It is mentioned at the end of one of the links I sent, >>> though it is quite buried. You essentially run one of the experiments >>> but scaled down to say ~20-30 min (just decrease the number of scans >>> or transients). This should be enough time for the system to be fully >>> stabilised, temperature wise. You have your MeOH in the spectrometer >>> during this and then, at the very end of the experiment, run a 90 >>> proton pulse (I'm not sure how you do that on Bruker, but on Varian >>> you can queue the 2 experiments to run directly one after the other) >>> and then measure the H signal. You might also be able to play with >>> your phase cycling so that the MeOH signal is not cancelled but rather >>> added during the R2 and R1 experiments, and then you should have a row >>> of MeOH signal in your 2D. >>> >>> Regards, >>> >>> Edward >>> >>> >>> On 23 March 2012 11:09, Martin Ballaschk <[email protected]> wrote: >>>> Dear relax-users, >>>> >>>> I am just beginning to record and analyze relaxation data for MF analysis. >>>> So far we collected data at 600 MHz, and a second data set at 750MHz is >>>> planned. >>>> >>>> I have two questions I hope you can help me with: >>>> >>>> 1) Temperature calibration >>>> >>>> We use single-scan interleaving to account for a constant temperature >>>> during the whole experimental series. We also use methanol to calibrate the >>>> spectrometer's temperature sensors. As we found out, every magnet is >>>> different and the on-screen parameters cannot be trusted. We have tables >>>> where This procedure is not done with the T2 measurements in mind, >>>> however. >>>> >>>> Isn't it also important that R1 and R2 measurements have the same >>>> temperature – how do you check for that? >>>> >>>> How can I check differences in sample heating between different magnets >>>> due to different air-flow etc? How to compensate for these temperature >>>> differences? Do I need different pulse programs that account for >>>> temperature >>>> differences for every spectrometer? Or is the difference insignificant once >>>> the spectrometers have been calibrated? >>>> >>>> >>>> 2) >>>> In Mac OS X ("Lion", 10.7.3), the self-contained relax Application bundle >>>> is crashing and is giving just an "relax error" and the option to >>>> "terminate" or "open the Console". >>>> >>>> I can run the “relax” script which is sitting inside >>>> relax.app/Contents/Resources/ and I get a prompt, but only after installing >>>> numpy via Macports. If I don't, relax complains that numpy is not >>>> installed. >>>> >>>> After installing wxPython 2.9 via the official installer "./relax" -g is >>>> attempting to start (I can see the splash screen), but then halts with the >>>> errors. >>>> >>>> Interestingly, I found out today that it seems to run just fine if I run >>>> the relax binary in Contents/MacOS by dropping it onto Terminal.app! >>>> (I did not test this without numpy and wXPython seperately installed.) >>>> >>>> What's your experience? What do you think is broken – my system (10.7) or >>>> something inside the application bundle? >>>> >>>> >>>> >>>> Cheers >>>> Martin >>>> >>>> *** >>>> >>>> RELAX ERROR MESSAGES FROM THE CONSOLE >>>> >>>> 15.03.12 15:19:15,538 relax: relax Error >>>> 15.03.12 15:19:17,667 com.apple.launchd.peruser.501: >>>> ([0x0-0x14e14e].com.nmr-relax.relax[70595]) Exited with code: 255 >>>> 15.03.12 15:19:22,227 [0x0-0x14f14f].com.nmr-relax.relax: <_FuncPtr object >>>> at >>>> 0x101b0dc80> >>>> 15.03.12 15:19:22,227 [0x0-0x14f14f].com.nmr-relax.relax: Traceback (most >>>> recent call last): >>>> 15.03.12 15:19:22,227 [0x0-0x14f14f].com.nmr-relax.relax: File >>>> "/Applications/relax.app/Contents/Resources/__boot__.py", line 179, in >>>> <module> >>>> 15.03.12 15:19:22,227 [0x0-0x14f14f].com.nmr-relax.relax: >>>> _argv_emulation() >>>> 15.03.12 15:19:22,227 [0x0-0x14f14f].com.nmr-relax.relax: File >>>> "/Applications/relax.app/Contents/Resources/__boot__.py", line 177, in >>>> _argv_emulation >>>> 15.03.12 15:19:22,227 [0x0-0x14f14f].com.nmr-relax.relax: >>>> _get_argvemulator().mainloop() >>>> 15.03.12 15:19:22,227 [0x0-0x14f14f].com.nmr-relax.relax: File >>>> "/Applications/relax.app/Contents/Resources/__boot__.py", line 101, in >>>> mainloop >>>> 15.03.12 15:19:22,227 [0x0-0x14f14f].com.nmr-relax.relax: stoptime = >>>> Evt.TickCount() + timeout >>>> 15.03.12 15:19:22,227 [0x0-0x14f14f].com.nmr-relax.relax: AttributeError: >>>> 'module' object has no attribute 'TickCount' >>>> >>>> -- >>>> Martin Ballaschk >>>> AG Schmieder >>>> Leibniz-Institut für Molekulare Pharmakologie >>>> Robert-Rössle-Str. 10 >>>> 13125 Berlin >>>> [email protected] >>>> Tel.: +49-30-94793-234/315 >>>> Büro: A 1.26 >>>> Labor: C 1.10 >>>> >>>> >>>> _______________________________________________ >>>> relax (http://nmr-relax.com) >>>> >>>> This is the relax-users mailing list >>>> [email protected] >>>> >>>> To unsubscribe from this list, get a password >>>> reminder, or change your subscription options, >>>> visit the list information page at >>>> https://mail.gna.org/listinfo/relax-users >>> >>> _______________________________________________ >>> relax (http://nmr-relax.com) >>> >>> This is the relax-users mailing list >>> [email protected] >>> >>> To unsubscribe from this list, get a password >>> reminder, or change your subscription options, >>> visit the list information page at >>> https://mail.gna.org/listinfo/relax-users >>> >>> >>> >>> _______________________________________________ >>> relax (http://nmr-relax.com) >>> >>> This is the relax-users mailing list >>> [email protected] >>> >>> To unsubscribe from this list, get a password >>> reminder, or change your subscription options, >>> visit the list information page at >>> https://mail.gna.org/listinfo/relax-users >>> > > -- > Martin Ballaschk > AG Schmieder > Leibniz-Institut für Molekulare Pharmakologie > Robert-Rössle-Str. 10 > 13125 Berlin > [email protected] > Tel.: +49-30-94793-234/315 > Büro: A 1.26 > Labor: C 1.10 > _______________________________________________ relax (http://nmr-relax.com) This is the relax-users mailing list [email protected] To unsubscribe from this list, get a password reminder, or change your subscription options, visit the list information page at https://mail.gna.org/listinfo/relax-users
