Hi Jack,
I've finally placed the relax-py.info and relax-py.patch files into
/sw/fink/10.4/local/main/finkinfo and installed the 1.3.14 relax
version via fink (with 'fink install relax-py27'). I have to be
careful as I have three different relax installs (the fink one, an svn
copy, and the DMG file version) as well as three different Python
installs (2 from fink and a manual install with Mac framework). When
I test the GUI with the fink version, my message is:
$ /sw/bin/python2.7 /sw/bin/relax --gui
/sw/lib/python2.7/site-packages/wx-2.8-gtk2-unicode/wx/_core.py:14448:
UserWarning: wxPython/wxWidgets release number mismatch
warnings.warn("wxPython/wxWidgets release number mismatch")
***MEMORY-ERROR***: python2.7[878]: GSlice: assertion failed:
aligned_memory == (gpointer) addr
Abort trap
$
This is using the 2.8 version of wxPython which fink automatically
installs and which appears to be fatal! How do I install wxPython 2.9
into the /sw directory without damaging the fink setup? For my
testing and included in the DMG file, I has used wxPython 2.9.2.4.
Cheers,
Edward
On 26 March 2012 19:54, Jack Howarth <[email protected]> wrote:
> On Mon, Mar 26, 2012 at 07:16:31PM +0200, Edward d'Auvergne wrote:
>> Hi Jack,
>>
>> Thank you for updating this! From memory, I did see a similar problem
>> when I was using the fink versions of all the software required.
>> Though I also had many problems with dependency clashes with Python,
>> wxPython, numpy, and scipy (note this is different to Scientific
>> Python which is no longer a dependency, see
>> http://pdb.finkproject.org/pdb/package.php/scipy-py27) - I had to use
>> the sources and these different relax dependencies had their own
>> dependencies which were not compatible with each other. The problem,
>> I think, was the dependance on different gcc versions, so each was
>> taking a day or longer to build as fink kept rebuilding the full tool
>> chain. Anyway, that's not completely related to this problem and
>> might already be resolved in fink.
>>
>> The problem looks more like a wxPython issue. Would you be able to
>> tell me the fink repository software and versions you used for this so
>> I can try to replicate the problem? Do you use the binary
>> distribution archive for the dependencies or have fink compile from
>> the source archives? I am using XCode 3.2.2, but I don't think using
>> 4.2 will change this problem. If you had the exact sequence of fink
>> commnds to set the relax dependencies up, that would be appreciated as
>> I could then be sure that I have close to the same setup as you. Then
>> I could debug and find the exact xwgtk problem, and come up with a
>> special work around.
>>
>> Cheers!
>>
>> Edward
>
> Edward,
> Try the attached packaging placed in /sw/fink/10.4/local/main/finkinfo. I
> don't
> know how old your fink installation is. If it is rather old, you might want
> to consider
> a clean bootstrap following the instructions on
> http://www.finkproject.org/download/srcdist.php.
> You will want to move aside your current fink installation from /sw to
> /sw.old beforehand.
> Also make sure you do 'fink selfupdate-cvs' and 'fink update-all' to keep your
> trees and installation current. You should be able to just use 'fink install
> relax-py27'
> to install relax 1.3.14. I would also consider upgrading your Xcode to 3.2.6
> which
> is the last release of the 3.2.x series. Oh, on darwin10, I used the gcc46
> compilers
> for the build, when prompted, if that makes any difference.
> Jack
> ps I also have built relax 1.3.14 under fink but had to use the 2.9.3 release
> of
> wxPython because that is the only wxPython they have for python 2.7 in
> macports.
> Have you tested relax against the wxPython 2.9.3 release on linux or any
> other target?
>
>
>
>>
>>
>>
>>
>> On 26 March 2012 18:14, Jack Howarth <[email protected]> wrote:
>> > Edward,
>> > I am in the process of updating the relax-py and relax packages in fink
>> > and
>> > macports to the latest release. However I am seeing some oddities with the
>> > new
>> > gui interface. In both cases, relax 1.3.13 and 1.3.14 exhibits a bug when
>> > executed as 'relax --gui'. The gui interface window opens much larger than
>> > the
>> > displayed contents. Only if I refresh the window does the contents properly
>> > expand out to the actual size of the window (by clicking on the green zoom
>> > button in the window frame twice). If I move aside the window, I also see
>> > a small
>> > square with a butterfly icon left on the screen. This square can't be
>> > closed or
>> > moved. Running 'relax --test-suite' is even more problematic as it seems to
>> > be trapped in an endless loop of display the squares with the butterfly
>> > icon
>> > and segfaults on exiting...
>> >
>> > % relax --test-suite
>> > /sw/lib/python2.7/site-packages/wx-2.8-gtk2-unicode/wx/_core.py:14448:
>> > UserWarning: wxPython/wxWidgets release number mismatch
>> > warnings.warn("wxPython/wxWidgets release number mismatch")
>> > Echoing of user function calls has been enabled.
>> >
>> >
>> >
>> >
>> > #############################
>> > # System / functional tests #
>> > #############################
>> >
>> >
>> > .........................................................................................................................................................................................................................................
>> > ----------------------------------------------------------------------
>> > Ran 233 tests in 291.075s
>> >
>> > OK
>> >
>> >
>> >
>> >
>> > ##############
>> > # Unit tests #
>> > ##############
>> >
>> >
>> > ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................
>> > ----------------------------------------------------------------------
>> > Ran 1232 tests in 11.183s
>> >
>> > OK
>> >
>> >
>> >
>> >
>> > #############
>> > # GUI tests #
>> > #############
>> >
>> >
>> >
>> > (python2.7:9037): Gtk-WARNING **: Unable to find default local directory
>> > monitor type
>> >
>> > (python2.7:9037): Gtk-WARNING **: Unable to find default local directory
>> > monitor type
>> >
>> > (python2.7:9037): Gtk-WARNING **: Unable to find default local directory
>> > monitor type
>> >
>> > (python2.7:9037): Gtk-WARNING **: Unable to find default local directory
>> > monitor type
>> >
>> > (python2.7:9037): Gtk-WARNING **: Unable to find default local directory
>> > monitor type
>> >
>> > (python2.7:9037): Gtk-WARNING **: Unable to find default local directory
>> > monitor type
>> >
>> > (python2.7:9037): Gtk-WARNING **: Unable to find default local directory
>> > monitor type
>> >
>> > (python2.7:9037): Gtk-WARNING **: Unable to find default local directory
>> > monitor type
>> >
>> > (python2.7:9037): Gtk-WARNING **: Unable to find default local directory
>> > monitor type
>> >
>> > (python2.7:9037): Gtk-WARNING **: Unable to find default local directory
>> > monitor type
>> >
>> > (python2.7:9037): Gtk-WARNING **: Unable to find default local directory
>> > monitor type
>> >
>> > (python2.7:9037): Gtk-WARNING **: Unable to find default local directory
>> > monitor type
>> >
>> > (python2.7:9037): Gtk-WARNING **: Unable to find default local directory
>> > monitor type
>> >
>> > (python2.7:9037): Gtk-WARNING **: Unable to find default local directory
>> > monitor type
>> > .
>> > (python2.7:9037): Gtk-WARNING **: Unable to find default local directory
>> > monitor type
>> >
>> > (python2.7:9037): Gtk-WARNING **: Unable to find default local directory
>> > monitor type
>> >
>> > (python2.7:9037): Gtk-WARNING **: Unable to find default local directory
>> > monitor type
>> >
>> > (python2.7:9037): Gtk-WARNING **: Unable to find default local directory
>> > monitor type
>> >
>> > (python2.7:9037): Gtk-WARNING **: Unable to find default local directory
>> > monitor type
>> >
>> > (python2.7:9037): Gtk-WARNING **: Unable to find default local directory
>> > monitor type
>> >
>> > (python2.7:9037): Gtk-WARNING **: Unable to find default local directory
>> > monitor type
>> >
>> > (python2.7:9037): Gtk-WARNING **: Unable to find default local directory
>> > monitor type
>> > .
>> > (python2.7:9037): Gtk-WARNING **: Unable to find default local directory
>> > monitor type
>> >
>> > (python2.7:9037): Gtk-WARNING **: Unable to find default local directory
>> > monitor type
>> >
>> > (python2.7:9037): Gtk-WARNING **: Unable to find default local directory
>> > monitor type
>> >
>> > (python2.7:9037): Gtk-WARNING **: Unable to find default local directory
>> > monitor type
>> >
>> > (python2.7:9037): Gtk-WARNING **: Unable to find default local directory
>> > monitor type
>> >
>> > (python2.7:9037): Gtk-WARNING **: Unable to find default local directory
>> > monitor type
>> >
>> > (python2.7:9037): Gtk-WARNING **: Unable to find default local directory
>> > monitor type
>> >
>> > (python2.7:9037): Gtk-WARNING **: Unable to find default local directory
>> > monitor type
>> >
>> > (python2.7:9037): Gtk-WARNING **: Unable to find default local directory
>> > monitor type
>> >
>> > (python2.7:9037): Gtk-WARNING **: Unable to find default local directory
>> > monitor type
>> >
>> > (python2.7:9037): Gtk-WARNING **: Unable to find default local directory
>> > monitor type
>> >
>> > (python2.7:9037): Gtk-WARNING **: Unable to find default local directory
>> > monitor type
>> >
>> > (python2.7:9037): Gtk-WARNING **: Unable to find default local directory
>> > monitor type
>> >
>> > (python2.7:9037): Gtk-WARNING **: Unable to find default local directory
>> > monitor type
>> >
>> > (python2.7:9037): Gtk-WARNING **: Unable to find default local directory
>> > monitor type
>> >
>> > (python2.7:9037): Gtk-WARNING **: Unable to find default local directory
>> > monitor type
>> >
>> > (python2.7:9037): Gtk-WARNING **: Unable to find default local directory
>> > monitor type
>> >
>> > (python2.7:9037): Gtk-WARNING **: Unable to find default local directory
>> > monitor type
>> >
>> > (python2.7:9037): Gtk-WARNING **: Unable to find default local directory
>> > monitor type
>> >
>> > (python2.7:9037): Gtk-WARNING **: Unable to find default local directory
>> > monitor type
>> >
>> > (python2.7:9037): Gtk-WARNING **: Unable to find default local directory
>> > monitor type
>> >
>> > (python2.7:9037): Gtk-WARNING **: Unable to find default local directory
>> > monitor type
>> >
>> > (python2.7:9037): Gtk-WARNING **: Unable to find default local directory
>> > monitor type
>> >
>> > (python2.7:9037): Gtk-WARNING **: Unable to find default local directory
>> > monitor type
>> > ..
>> > ----------------------------------------------------------------------
>> > Ran 4 tests in 70.926s
>> >
>> > OK
>> >
>> >
>> >
>> >
>> > ###################################
>> > # Summary of the relax test suite #
>> > ###################################
>> >
>> >
>> > # Optional packages/modules
>> > ###########################
>> >
>> > No tests skipped due to missing modules.
>> >
>> > # Synopsis
>> > ##########
>> >
>> > System/functional tests ......................................... [ OK ]
>> > Unit tests ...................................................... [ OK ]
>> > GUI tests ....................................................... [ OK ]
>> > Synopsis ........................................................ [ OK ]
>> >
>> >
>> >
>> > Segmentation fault
>> >
>> > It is odd that the GUI tests pass but that relax segfaults in the process.
>> > Jack
>> > ps This is on x86_64 fink under darwin10 using Xcode 4.2.
>> >
>> > _______________________________________________
>> > relax (http://nmr-relax.com)
>> >
>> > This is the relax-users mailing list
>> > [email protected]
>> >
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>> > reminder, or change your subscription options,
>> > visit the list information page at
>> > https://mail.gna.org/listinfo/relax-users
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