I think with help I have found the source of the problem and I do not
believe it was any of my tagging or ripping programs at fault. I think
the cache files in LMS had become corrupted. Here are the steps I took
that corrected my problem (I think):

1) Using the Search command in the web interface of LMS I looked for
.flac files. It found a small number of files (14, remember I had
corrected a number previously). I wrote these songs down
2) I stopped LMS using the command : sudo
/etc/init.d/logitechmediacenter 
stop 
3) I deleted the contents of /var/lib/squeezeboxserver/cache using
Nautilus with Root priviledges. Two folders I left intact though
(DownloadedPlugins, InstalledPlugins)
4) restarted LMS and allowed it to rescan and rebuild the cache files
5) I went through the list of songs I made in step 1 and played the
tracks which all displayed as they should

Perhaps you are thinking that was fairly obvious(clearing the cache)
and I should have done that right from the start and in Windows I
probably would have but I did not know how to do it in Linux-Ubuntu and
didn't even think about it until Aubuti suggested it.

Thanks for all the help everyone offered


-- 
SlimChances
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