hi

I have cleanup my /usr/local  - reinstalled a fresh brew  and Xcode.
I have run ./configure in sage-9.3-beta4 that complained about missing 
homebrew package. I have installed them.
% brew list
aom fribidi harfbuzz libheif little-cms2 pandoc srt
arb gcc icu4c libidn2 lzo pcre suite-sparse
bdw-gc gd igraph liblqr metis pcre2 tbb
boost gdbm ilmbase libmpc mpfi pixman tesseract
c-ares gettext imagemagick libogg mpfr pkg-config texinfo
cairo ghostscript isl libomp nauty ppl theora
cmake giflib jemalloc libpng nettle python@3.9 tox
coreutils glib jpeg libsamplerate nghttp2 r unbound
dav1d glpk lame libsndfile ninja rav1e webp
docbook gmp leptonica libsoxr ntl readline x264
docbook-xsl gnu-getopt libass libtasn1 openblas rtmpdump x265
ffmpeg gnutls libatomic_ops libtiff opencore-amr rubberband xmlto
flac gobject-introspection libbluray libtool openexr sdl2 xvid
flint gpatch libde265 libunistring openjpeg shared-mime-info xz
fontconfig graphite2 libev libvidstab openssl@1.1 snappy zeromq
freetype gsl libevent libvorbis opus speex
frei0r guile libffi libvpx p11-kit sqlite

my homebrew setup is clean 

% brew doctor
Your system is ready to brew.

then   boostrapping, sourcing brew environnement and rerun configure in 
sage, I still get the message

   $ brew install pandoc ffmpeg imagemagick texinfo


Pierre

Le mardi 15 décembre 2020 à 19:57:40 UTC+1, zsc...@gmail.com a écrit :

> Have you tried running "brew doctor"? Homebrew should complain loudly 
> about all of the header files in /usr/local/include which could cause 
> conflicts.  For example, if I touch stdio.h in my /usr/local/include and 
> then I run brew doctor I get:
>
> "Warning: Unbrewed header files were found in /usr/local/include.
> If you didn't put them there on purpose they could cause problems when
> building Homebrew formulae, and may need to be deleted.
>
> Unexpected header files:
>   /usr/local/include/stdio.h"
>
> I would start with running brew doctor and trying to fix the 
> recommendations there.
>
> On Tuesday, December 15, 2020 at 8:43:28 AM UTC-5 dim...@gmail.com wrote:
>
>> On Tue, Dec 15, 2020 at 1:23 PM Pierre Vanhove <vanhove...@gmail.com> 
>> wrote: 
>> > 
>> > hi 
>> > 
>> > 
>> > What did one do yesterday just after 17:00 on the machine? 
>> > Updated Homebrew? Installed macOS command line tools? 
>> > 
>> > 
>> > yes I updated homebrew, but with a bad internet connection and the 
>> connection broke. I had to redo it. 
>> > 
>> > But curiously, I have deleted the sage-9.2 folder downloaded a 
>> sage-9.3-beta4 and then worked from the new folder. 
>> > 
>> > I will see if using the backup from my time machine solves the problem 
>> by going back in time. 
>>
>> I'd suggest to install the full XCode. The fact that homebrew 
>> apparently created that link indicates 
>> that not all is well; I'd also erase the whole /usr/local and 
>> reinstall Homebrew from scratch, 
>> after XCode is installed. 
>>
>> macOS, Homebrew, XCode are moving targets, it's hard to keep up with 
>> them. 
>>
>> > 
>> > Now that they have put sirocco on cocacl, I will work with that. And I 
>> will leave most of the sage coding to Andrey Novoseltsev then since locally 
>> I cannot work... 
>> > 
>> > best, Pierre 
>> > 
>> > ======================================================== 
>> > Pierre Vanhove (vanhove...@gmail.com) | web: 
>> http://sites.google.com/site/vanhovepierre/ 
>> > 
>> > 
>> > 
>> > 
>> > 
>> > 
>> > -- 
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>>  
>>
>>
>

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