Hi - so I've tried to recompile (after distclean etc. ) now I get another compilation error
Error installing package markupsafe-1.1.1 Le mercredi 16 décembre 2020 à 10:01:26 UTC+1, dim...@gmail.com a écrit : > It is not usual that the 1st run went ok, but the next one crashed on > startup. > Could you try to move away ~/.sage/ and see if it helps? > (it tends to accumulate incompatible stuff and during updates cause > all sorts of issues) > > If it doesn't help: > > Could you provide the output of > > otool -L /Users/pierre/local/lib/libSingular-4.1.1.dylib > > On Wed, Dec 16, 2020 at 8:22 AM Pierre Vanhove <vanhove...@gmail.com> > wrote: > > > > Here is the crash report > > > > > > > > Le mercredi 16 décembre 2020 à 09:17:14 UTC+1, Pierre Vanhove a écrit : > >> > >> Hi > >> > >> thanks for the tips. So I have recompiled sage successfully > >> > >> touch > "/Users/pierre/local/sage-9.3.beta4/local/var/lib/sage/installed/sagelib-9.3.beta4" > >> "/Users/pierre/local/sage-9.3.beta4/build/bin/sage-starts" > >> > >> Testing that Sage starts... > >> [2020-12-16 01:46:39] SageMath version 9.3.beta4, Release Date: > 2020-12-14 > >> This looks like the first time you are running Sage. > >> Cleaning up, do not interrupt this. > >> Done cleaning. > >> Yes, Sage starts. > >> > >> In a terminal window, I started sage. Did 1+1 test. I quit sage, and > launch it again, and sage crashes > >> > >> ImportError: > dlopen(/Users/pierre/local/lib/python3.9/site-packages/sage/matrix/ > matrix_mpolynomial_dense.cpython-39-darwin.so, 2): Library not loaded: > /Users/pierre/local/lib/libSingular-4.1.1.dylib > >> Referenced from: > /Users/pierre/local/lib/python3.9/site-packages/sage/matrix/ > matrix_mpolynomial_dense.cpython-39-darwin.so > >> Reason: image not found > >> > >> I'm sending a crash report. > >> > >> Pierre > >> > >> > >> Le mardi 15 décembre 2020 à 21:31:23 UTC+1, zsc...@gmail.com a écrit : > >>> > >>> You can safely ignore that message. I think there is some ongoing work > being done on changing how sage handles recommended packages and that > message is a byproduct. If it's really bothering you then you can just type: > >>> > >>> make _recommended > >>> > >>> and I think that message should disappear. > >>> > >>> On Tuesday, December 15, 2020 at 3:24:12 PM UTC-5 vanhove...@gmail.com > wrote: > >>>> > >>>> hi > >>>> > >>>> I have cleanup my /usr/local - reinstalled a fresh brew and Xcode. > >>>> I have run ./configure in sage-9.3-beta4 that complained about > missing homebrew package. I have installed them. > >>>> % brew list > >>>> aom fribidi harfbuzz libheif little-cms2 pandoc srt > >>>> arb gcc icu4c libidn2 lzo pcre suite-sparse > >>>> bdw-gc gd igraph liblqr metis pcre2 tbb > >>>> boost gdbm ilmbase libmpc mpfi pixman tesseract > >>>> c-ares gettext imagemagick libogg mpfr pkg-config texinfo > >>>> cairo ghostscript isl libomp nauty ppl theora > >>>> cmake giflib jemalloc libpng nettle python@3.9 tox > >>>> coreutils glib jpeg libsamplerate nghttp2 r unbound > >>>> dav1d glpk lame libsndfile ninja rav1e webp > >>>> docbook gmp leptonica libsoxr ntl readline x264 > >>>> docbook-xsl gnu-getopt libass libtasn1 openblas rtmpdump x265 > >>>> ffmpeg gnutls libatomic_ops libtiff opencore-amr rubberband xmlto > >>>> flac gobject-introspection libbluray libtool openexr sdl2 xvid > >>>> flint gpatch libde265 libunistring openjpeg shared-mime-info xz > >>>> fontconfig graphite2 libev libvidstab openssl@1.1 snappy zeromq > >>>> freetype gsl libevent libvorbis opus speex > >>>> frei0r guile libffi libvpx p11-kit sqlite > >>>> > >>>> my homebrew setup is clean > >>>> > >>>> % brew doctor > >>>> Your system is ready to brew. > >>>> > >>>> then boostrapping, sourcing brew environnement and rerun configure in > sage, I still get the message > >>>> > >>>> $ brew install pandoc ffmpeg imagemagick texinfo > >>>> > >>>> > >>>> Pierre > >>>> > >>>> Le mardi 15 décembre 2020 à 19:57:40 UTC+1, zsc...@gmail.com a écrit > : > >>>>> > >>>>> Have you tried running "brew doctor"? Homebrew should complain > loudly about all of the header files in /usr/local/include which could > cause conflicts. For example, if I touch stdio.h in my /usr/local/include > and then I run brew doctor I get: > >>>>> > >>>>> "Warning: Unbrewed header files were found in /usr/local/include. > >>>>> If you didn't put them there on purpose they could cause problems > when > >>>>> building Homebrew formulae, and may need to be deleted. > >>>>> > >>>>> Unexpected header files: > >>>>> /usr/local/include/stdio.h" > >>>>> > >>>>> I would start with running brew doctor and trying to fix the > recommendations there. > >>>>> > >>>>> On Tuesday, December 15, 2020 at 8:43:28 AM UTC-5 dim...@gmail.com > wrote: > >>>>>> > >>>>>> On Tue, Dec 15, 2020 at 1:23 PM Pierre Vanhove < > vanhove...@gmail.com> wrote: > >>>>>> > > >>>>>> > hi > >>>>>> > > >>>>>> > > >>>>>> > What did one do yesterday just after 17:00 on the machine? > >>>>>> > Updated Homebrew? Installed macOS command line tools? > >>>>>> > > >>>>>> > > >>>>>> > yes I updated homebrew, but with a bad internet connection and > the connection broke. I had to redo it. > >>>>>> > > >>>>>> > But curiously, I have deleted the sage-9.2 folder downloaded a > sage-9.3-beta4 and then worked from the new folder. > >>>>>> > > >>>>>> > I will see if using the backup from my time machine solves the > problem by going back in time. > >>>>>> > >>>>>> I'd suggest to install the full XCode. The fact that homebrew > >>>>>> apparently created that link indicates > >>>>>> that not all is well; I'd also erase the whole /usr/local and > >>>>>> reinstall Homebrew from scratch, > >>>>>> after XCode is installed. > >>>>>> > >>>>>> macOS, Homebrew, XCode are moving targets, it's hard to keep up > with them. > >>>>>> > >>>>>> > > >>>>>> > Now that they have put sirocco on cocacl, I will work with that. > And I will leave most of the sage coding to Andrey Novoseltsev then since > locally I cannot work... > >>>>>> > > >>>>>> > best, Pierre > >>>>>> > > >>>>>> > ======================================================== > >>>>>> > Pierre Vanhove (vanhove...@gmail.com) | web: > http://sites.google.com/site/vanhovepierre/ > >>>>>> > > >>>>>> > > >>>>>> > > >>>>>> > > >>>>>> > > >>>>>> > > >>>>>> > -- > >>>>>> > You received this message because you are subscribed to the > Google Groups "sage-devel" group. > >>>>>> > To unsubscribe from this group and stop receiving emails from it, > send an email to sage-devel+...@googlegroups.com. > >>>>>> > To view this discussion on the web visit > https://groups.google.com/d/msgid/sage-devel/95B792F4-B444-4DBB-8E4B-2846A020C683%40gmail.com > . > > > > -- > > You received this message because you are subscribed to the Google > Groups "sage-devel" group. > > To unsubscribe from this group and stop receiving emails from it, send > an email to sage-devel+...@googlegroups.com. > > To view this discussion on the web visit > https://groups.google.com/d/msgid/sage-devel/f8466fc7-c21d-457e-8204-03c9ddc9fcd4n%40googlegroups.com > . > -- You received this message because you are subscribed to the Google Groups "sage-devel" group. To unsubscribe from this group and stop receiving emails from it, send an email to sage-devel+unsubscr...@googlegroups.com. To view this discussion on the web visit https://groups.google.com/d/msgid/sage-devel/2286952c-9ffb-4f68-9b60-9487fd7275cbn%40googlegroups.com.
Found local metadata for markupsafe-1.1.1 Using cached file /Users/pierre/local/sage-9.3.beta4/upstream/markupsafe-1.1.1.tar.gz markupsafe-1.1.1 ==================================================== Setting up build directory for markupsafe-1.1.1 Finished extraction No patch files found in ../patches **************************************************** Host system: Darwin macbookpro-vanhove.dyndns.cern.ch 19.6.0 Darwin Kernel Version 19.6.0: Thu Oct 29 22:56:45 PDT 2020; root:xnu-6153.141.2.2~1/RELEASE_X86_64 x86_64 **************************************************** C compiler: gcc C compiler version: Configured with: --prefix=/Library/Developer/CommandLineTools/usr --with-gxx-include-dir=/Library/Developer/CommandLineTools/SDKs/MacOSX10.15.sdk/usr/include/c++/4.2.1 Apple clang version 12.0.0 (clang-1200.0.32.27) Target: x86_64-apple-darwin19.6.0 Thread model: posix InstalledDir: /Library/Developer/CommandLineTools/usr/bin **************************************************** Package 'markupsafe' is currently not installed No legacy uninstaller found for 'markupsafe'; nothing to do Installing markupsafe-1.1.1 Error: Tried to use Sage's Python which was not yet installed. If this was called from an spkg-install script for another package you should add $(PYTHON) as a dependency in build/pkgs/<pkg>/dependencies Error: could not determine package name ******************************************************************************** Error uninstalling a previous version of markupsafe-1.1.1 ******************************************************************************** real 0m0.204s user 0m0.016s sys 0m0.026s ************************************************************************ Error installing package markupsafe-1.1.1 ************************************************************************ Please email sage-devel (http://groups.google.com/group/sage-devel) explaining the problem and including the log file /Users/pierre/local/sage-9.3.beta4/logs/pkgs/markupsafe-1.1.1.log Describe your computer, operating system, etc. If you want to try to fix the problem yourself, *don't* just cd to /Users/pierre/local/var/tmp/sage/build/markupsafe-1.1.1 and type 'make' or whatever is appropriate. Instead, the following commands setup all environment variables correctly and load a subshell for you to debug the error: (cd '/Users/pierre/local/var/tmp/sage/build/markupsafe-1.1.1' && '/Users/pierre/local/sage-9.3.beta4/sage' --buildsh) When you are done debugging, you can type "exit" to leave the subshell. ************************************************************************
