Any ideas on how to debug this? I find it hard to review tickets and write code if I cannot run doctests.
Martin On Monday, 2 February 2026 at 15:12:37 UTC+1 [email protected] wrote: > The question is which one should be first in PATH for sage -t > > > On February 2, 2026 1:57:23 AM CST, Antonio Rojas <[email protected]> > wrote: > >> There are two 'sage' executables: the python entry point installed by >> meson in $PATH, and the bash script from the sage source tree. Only the >> latter accepts the '-t' option. >> >> El lunes, 2 de febrero de 2026 a las 8:44:06 UTC+1, [email protected] >> escribió: >> >> Hm. >> >> martin@toolbox:~$ which sage >> martin@toolbox:~$ mamba activate sage-dev >> (sage-dev) martin@toolbox:~$ which sage >> /home/martin/miniforge3/envs/sage-dev/bin/sage >> (sage-dev) martin@toolbox:~$ echo $PATH >> >> /home/martin/miniforge3/envs/sage-dev/bin:/home/martin/miniforge3/condabin:/home/martin/.local/bin:/home/martin/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin: >> /usr/bin:/sbin:/bin:/usr/games:/usr/local/games:/snap/bin >> (sage-dev) martin@toolbox:~$ ls ~/bin >> sage-alt >> (sage-dev) martin@toolbox:~$ ls ~/.local/bin >> arxiv_latex_cleaner coverage coverage-3.8 cysignals-CSI cythonize >> gprof2dot markdown-it pygmentize runsnake snakeviz >> codespell coverage3 cygdb cython git-trac >> kernprof pycodestyle relint runsnakemem tuna >> (sage-dev) martin@toolbox:~$ >> >> I guess I should do some cleaning, but I cannot find a second sage. >> >> Martin >> >> >> On Sunday, 1 February 2026 at 20:32:08 UTC+1 [email protected] wrote: >> >> >> >> On February 1, 2026 12:21:37 PM CST, 'Martin R' via sage-devel < >> [email protected]> wrote: >> >apparently there is a problem with gap_package_hap. I can run and access >> >it in an interactive session, but it makes the doctester hang. >> > >> >what is the difference when something is executed as part of doctesting? >> > >> >possibly related: although I can start sage using >> > >> >(sage-dev) martin@toolbox:~/sage-trac$ sage >> > >> >I need to prepend "./" when I want to run "sage -t". >> > >> probably you have a version of sage in your PATH, which is not the same >> as ./sage >> >> this spells trouble... >> >> >> >> >> >Martin >> > >> > >> >On Friday, 30 January 2026 at 08:54:22 UTC+1 Martin R wrote: >> > >> >> I don't really know, but I don't think that I have any other gap >> things >> >> installed (yet). >> >> >> >> (sage-dev) martin@toolbox:~/sage-trac$ mamba list >> >> List of packages in environment: >> "/home/martin/miniforge3/envs/sage-dev" >> >> >> >> Name Version Build >> >> Channel >> >> >> ────────────────────────────────────────────────────────────────────────────────── >> >> >> >> >> >> 4ti2 1.6.13 h4181bf9_0 >> >> conda-forge >> >> _libgcc_mutex 0.1 conda_forge >> >> conda-forge >> >> _openmp_mutex 4.5 2_gnu >> >> conda-forge >> >> _python_abi3_support 1.0 hd8ed1ab_2 >> >> conda-forge >> >> _r-mutex 1.0.1 anacondar_1 >> >> conda-forge >> >> alabaster 1.0.0 pyhd8ed1ab_1 >> >> conda-forge >> >> alsa-lib 1.2.14 hb9d3cd8_0 >> >> conda-forge >> >> annotated-types 0.7.0 pyhd8ed1ab_1 >> >> conda-forge >> >> appdirs 1.4.4 pyhd8ed1ab_1 >> >> conda-forge >> >> arpack 3.9.1 nompi_hf03ea27_102 >> >> conda-forge >> >> asttokens 3.0.0 pyhd8ed1ab_1 >> >> conda-forge >> >> attrs 25.3.0 pyh71513ae_0 >> >> conda-forge >> >> autoconf 2.72 pl5321hbb4ee43_1 >> >> conda-forge >> >> automake 1.17 pl5321ha770c72_0 >> >> conda-forge >> >> babel 2.17.0 pyhd8ed1ab_0 >> >> conda-forge >> >> backports 1.0 pyhd8ed1ab_5 >> >> conda-forge >> >> backports.tarfile 1.2.0 pyhd8ed1ab_1 >> >> conda-forge >> >> bdw-gc 8.2.8 h5888daf_2 >> >> conda-forge >> >> beautifulsoup4 4.14.2 pyha770c72_0 >> >> conda-forge >> >> binutils 2.44 h4852527_2 >> >> conda-forge >> >> binutils_impl_linux-64 2.44 hdf8817f_2 >> >> conda-forge >> >> binutils_linux-64 2.44 h4852527_2 >> >> conda-forge >> >> blas 2.136 openblas >> >> conda-forge >> >> blas-devel 3.9.0 36_h1ea3ea9_openblas >> >> conda-forge >> >> bleach 6.2.0 pyh29332c3_4 >> >> conda-forge >> >> bleach-with-css 6.2.0 h82add2a_4 >> >> conda-forge >> >> bliss 0.77 h00ab1b0_1 >> >> conda-forge >> >> boltons 25.0.0 pyhd8ed1ab_0 >> >> conda-forge >> >> boost-cpp 1.85.0 h3c6214e_4 >> >> conda-forge >> >> brotli 1.1.0 hb03c661_4 >> >> conda-forge >> >> brotli-bin 1.1.0 hb03c661_4 >> >> conda-forge >> >> brotli-python 1.1.0 py312h1289d80_4 >> >> conda-forge >> >> bwidget 1.10.1 ha770c72_1 >> >> conda-forge >> >> bzip2 1.0.8 hda65f42_8 >> >> conda-forge >> >> c-ares 1.34.5 hb9d3cd8_0 >> >> conda-forge >> >> c-compiler 1.11.0 h4d9bdce_0 >> >> conda-forge >> >> ca-certificates 2025.10.5 hbd8a1cb_0 >> >> conda-forge >> >> cachecontrol 0.14.3 pyha770c72_0 >> >> conda-forge >> >> cachecontrol-with-filecache 0.14.3 pyhd8ed1ab_0 >> >> conda-forge >> >> cairo 1.18.4 h3394656_0 >> >> conda-forge >> >> cddlib 1!0.94m h9202a9a_0 >> >> conda-forge >> >> certifi 2025.10.5 pyhd8ed1ab_0 >> >> conda-forge >> >> cffi 2.0.0 py312h35888ee_0 >> >> conda-forge >> >> charset-normalizer 3.4.3 pyhd8ed1ab_0 >> >> conda-forge >> >> click 8.3.0 pyh707e725_0 >> >> conda-forge >> >> click-default-group 1.2.4 pyhd8ed1ab_1 >> >> conda-forge >> >> cliquer 1.23 hb03c661_0 >> >> conda-forge >> >> colorama 0.4.6 pyhd8ed1ab_1 >> >> conda-forge >> >> comm 0.2.3 pyhe01879c_0 >> >> conda-forge >> >> conda-gcc-specs 14.3.0 hb991d5c_5 >> >> conda-forge >> >> conda-lock 3.0.4 pyh367d9c9_1 >> >> conda-forge >> >> conda-souschef 2.2.3 pyhd8ed1ab_0 >> >> conda-forge >> >> contourpy 1.3.3 py312hd9148b4_2 >> >> conda-forge >> >> conway-polynomials 0.10 pyhd8ed1ab_1 >> >> conda-forge >> >> coverage 7.10.7 py312h8a5da7c_0 >> >> conda-forge >> >> cpython 3.12.11 py312hd8ed1ab_0 >> >> conda-forge >> >> crashtest 0.4.1 pyhd8ed1ab_1 >> >> conda-forge >> >> cryptography 46.0.2 py312hee9fe19_0 >> >> conda-forge >> >> curl 8.18.0 h4e3cde8_0 >> >> conda-forge >> >> cxx-compiler 1.11.0 hfcd1e18_0 >> >> conda-forge >> >> cycler 0.12.1 pyhd8ed1ab_1 >> >> conda-forge >> >> cypari2 2.2.2 py312hb7bab4f_0 >> >> conda-forge >> >> cyrus-sasl 2.1.28 hd9c7081_0 >> >> conda-forge >> >> cysignals 1.12.5 py312h1289d80_0 >> >> conda-forge >> >> cython 3.1.4 py312h7c45ced_2 >> >> conda-forge >> >> dbus 1.16.2 h3c4dab8_0 >> >> conda-forge >> >> debugpy 1.8.17 py312h8285ef7_0 >> >> conda-forge >> >> decorator 5.2.1 pyhd8ed1ab_0 >> >> conda-forge >> >> defusedxml 0.7.1 pyhd8ed1ab_0 >> >> conda-forge >> >> deprecated 1.2.18 pyhd8ed1ab_0 >> >> conda-forge >> >> distlib 0.4.0 pyhd8ed1ab_0 >> >> conda-forge >> >> docutils 0.21.2 pyhd8ed1ab_1 >> >> conda-forge >> >> dot2tex 2.11.3 pyhd8ed1ab_1 >> >> conda-forge >> >> double-conversion 3.3.1 h5888daf_0 >> >> conda-forge >> >> dulwich 0.22.8 py312h12e396e_0 >> >> conda-forge >> >> ecl 24.5.10 h75482ee_1 >> >> conda-forge >> >> eclib 20250627 hd0dfdeb_0 >> >> conda-forge >> >> ecm 7.0.6 h90cbb55_0 >> >> conda-forge >> >> eigen 3.4.0 h171cf75_1 >> >> conda-forge >> >> ensureconda 1.4.7 pyh29332c3_0 >> >> conda-forge >> >> exceptiongroup 1.3.0 pyhd8ed1ab_0 >> >> conda-forge >> >> execnet 2.1.1 pyhd8ed1ab_1 >> >> conda-forge >> >> executing 2.2.1 pyhd8ed1ab_0 >> >> conda-forge >> >> expat 2.7.1 hecca717_0 >> >> conda-forge >> >> fflas-ffpack 2.5.0 h4f9960b_0 >> >> conda-forge >> >> filelock 3.19.1 pyhd8ed1ab_0 >> >> conda-forge >> >> flake8 7.3.0 pyhd8ed1ab_0 >> >> conda-forge >> >> flake8-rst-docstrings 0.3.1 pyhd8ed1ab_0 >> >> conda-forge >> >> fmt 11.2.0 h07f6e7f_0 >> >> conda-forge >> >> font-ttf-dejavu-sans-mono 2.37 hab24e00_0 >> >> conda-forge >> >> font-ttf-inconsolata 3.000 h77eed37_0 >> >> conda-forge >> >> font-ttf-source-code-pro 2.038 h77eed37_0 >> >> conda-forge >> >> font-ttf-ubuntu 0.83 h77eed37_3 >> >> conda-forge >> >> fontconfig 2.15.0 h7e30c49_1 >> >> conda-forge >> >> fonts-conda-ecosystem 1 0 >> >> conda-forge >> >> fonts-conda-forge 1 0 >> >> conda-forge >> >> fonttools 4.60.1 py312h8a5da7c_0 >> >> conda-forge >> >> fortran-compiler 1.11.0 h9bea470_0 >> >> conda-forge >> >> fplll 5.5.0 hd20a173_0 >> >> conda-forge >> >> fpylll 0.6.4 py312ha4ee43a_0 >> >> conda-forge >> >> freetype 2.14.1 ha770c72_0 >> >> conda-forge >> >> fribidi 1.0.16 hb03c661_0 >> >> conda-forge >> >> furo 2024.8.6 pyhd8ed1ab_2 >> >> conda-forge >> >> gap 4.14.0 ha7249aa_5 >> >> conda-forge >> >> gap-core 4.14.0 h3b03731_5 >> >> conda-forge >> >> gap-defaults 4.14.0 ha770c72_5 >> >> conda-forge >> >> gcc 14.3.0 h76bdaa0_5 >> >> conda-forge >> >> gcc_impl_linux-64 14.3.0 hd9e9e21_5 >> >> conda-forge >> >> gcc_linux-64 14.3.0 h1382650_11 >> >> conda-forge >> >> gf2x 1.3.0 h55551d5_3 >> >> conda-forge >> >> gfan 0.6.2 hb86e20a_1003 >> >> conda-forge >> >> gfortran 14.3.0 he448592_5 >> >> conda-forge >> >> gfortran_impl_linux-64 14.3.0 h7db7018_5 >> >> conda-forge >> >> gfortran_linux-64 14.3.0 h30a37f7_11 >> >> conda-forge >> >> gitdb 4.0.12 pyhd8ed1ab_0 >> >> conda-forge >> >> gitpython 3.1.45 pyhff2d567_0 >> >> conda-forge >> >> givaro 4.2.0 h49654ea_3 >> >> conda-forge >> >> glpk 5.0 h445213a_0 >> >> conda-forge >> >> gmp 6.3.0 hac33072_2 >> >> conda-forge >> >> gmpy2 2.1.5 py312h7201bc8_3 >> >> conda-forge >> >> graphite2 1.3.14 hecca717_2 >> >> conda-forge >> >> grayskull 2.9.1 pyhd8ed1ab_0 >> >> conda-forge >> >> gsl 2.8 hbf7d49c_1 >> >> conda-forge >> >> gxx 14.3.0 he448592_5 >> >> conda-forge >> >> gxx_impl_linux-64 14.3.0 he663afc_5 >> >> conda-forge >> >> gxx_linux-64 14.3.0 ha7acb78_11 >> >> conda-forge >> >> h2 4.3.0 pyhcf101f3_0 >> >> conda-forge >> >> harfbuzz 11.4.5 h15599e2_0 >> >> conda-forge >> >> hpack 4.1.0 pyhd8ed1ab_0 >> >> conda-forge >> >> hyperframe 6.1.0 pyhd8ed1ab_0 >> >> conda-forge >> >> icu 75.1 he02047a_0 >> >> conda-forge >> >> idna 3.10 pyhd8ed1ab_1 >> >> conda-forge >> >> igraph 0.10.16 h98b0679_0 >> >> conda-forge >> >> imagesize 1.4.1 pyhd8ed1ab_0 >> >> conda-forge >> >> iml 1.0.5 h623f65a_1004 >> >> conda-forge >> >> importlib-metadata 8.7.0 pyhe01879c_1 >> >> conda-forge >> >> importlib_resources 6.5.2 pyhd8ed1ab_0 >> >> conda-forge >> >> iniconfig 2.0.0 pyhd8ed1ab_1 >> >> conda-forge >> >> ipykernel 6.30.1 pyh82676e8_0 >> >> conda-forge >> >> ipython 8.18.1 pyh707e725_3 >> >> conda-forge >> >> ipython_pygments_lexers 1.1.1 pyhd8ed1ab_0 >> >> conda-forge >> >> ipywidgets 8.1.7 pyhd8ed1ab_0 >> >> conda-forge >> >> jaraco.classes 3.4.0 pyhd8ed1ab_2 >> >> conda-forge >> >> jaraco.context 6.0.1 pyhd8ed1ab_0 >> >> conda-forge >> >> jaraco.functools 4.3.0 pyhd8ed1ab_0 >> >> conda-forge >> >> jedi 0.19.2 pyhd8ed1ab_1 >> >> conda-forge >> >> jeepney 0.9.0 pyhd8ed1ab_0 >> >> conda-forge >> >> jinja2 3.1.6 pyhd8ed1ab_0 >> >> conda-forge >> >> jsonschema 4.25.1 pyhe01879c_0 >> >> conda-forge >> >> jsonschema-specifications 2025.9.1 pyhcf101f3_0 >> >> conda-forge >> >> jupyter-sphinx 0.5.3 pyha770c72_5 >> >> conda-forge >> >> jupyter_client 8.6.3 pyhd8ed1ab_1 >> >> conda-forge >> >> jupyter_core 5.8.1 pyh31011fe_0 >> >> conda-forge >> >> jupyterlab_pygments 0.3.0 pyhd8ed1ab_2 >> >> conda-forge >> >> jupyterlab_widgets 3.0.15 pyhd8ed1ab_0 >> >> conda-forge >> >> kernel-headers_linux-64 4.18.0 he073ed8_8 >> >> conda-forge >> >> keyring 25.6.0 pyha804496_0 >> >> conda-forge >> >> keyutils 1.6.3 hb9d3cd8_0 >> >> conda-forge >> >> kiwisolver 1.4.9 py312h0a2e395_1 >> >> conda-forge >> >> krb5 1.21.3 h659f571_0 >> >> conda-forge >> >> lcalc 2.1.1 h9cf73fc_0 >> >> conda-forge >> >> lcms2 2.17 h717163a_0 >> >> conda-forge >> >> ld_impl_linux-64 2.44 ha97dd6f_2 >> >> conda-forge >> >> lerc 4.0.0 h0aef613_1 >> >> conda-forge >> >> libblas 3.9.0 36_h4a7cf45_openblas >> >> conda-forge >> >> libboost 1.85.0 h0ccab89_4 >> >> conda-forge >> >> libboost-devel 1.85.0 h00ab1b0_4 >> >> conda-forge >> >> libboost-headers 1.85.0 ha770c72_4 >> >> conda-forge >> >> libbraiding 1.3.1 h5888daf_0 >> >> conda-forge >> >> libbrial 1.2.15 hf69d4a9_0 >> >> conda-forge >> >> libbrotlicommon 1.1.0 hb03c661_4 >> >> conda-forge >> >> libbrotlidec 1.1.0 hb03c661_4 >> >> conda-forge >> >> libbrotlienc 1.1.0 hb03c661_4 >> >> conda-forge >> >> libcblas 3.9.0 36_h0358290_openblas >> >> conda-forge >> >> libclang-cpp20.1 20.1.8 default_h99862b1_4 >> >> conda-forge >> >> libclang13 21.1.0 default_h746c552_1 >> >> conda-forge >> >> libcups 2.3.3 hb8b1518_5 >> >> conda-forge >> >> libcurl 8.18.0 h4e3cde8_0 >> >> conda-forge >> >> libdeflate 1.24 h86f0d12_0 >> >> conda-forge >> >> libdrm 2.4.125 hb03c661_1 >> >> conda-forge >> >> libedit 3.1.20250104 pl5321h7949ede_0 >> >> conda-forge >> >> libegl 1.7.0 ha4b6fd6_2 >> >> conda-forge >> >> libev 4.33 hd590300_2 >> >> conda-forge >> >> libexpat 2.7.1 hecca717_0 >> >> conda-forge >> >> libffi 3.4.6 h2dba641_1 >> >> conda-forge >> >> libflint 3.2.2 h754cb6e_0 >> >> conda-forge >> >> libfreetype 2.14.1 ha770c72_0 >> >> conda-forge >> >> libfreetype6 2.14.1 h73754d4_0 >> >> conda-forge >> >> libgcc 15.1.0 h767d61c_5 >> >> conda-forge >> >> libgcc-devel_linux-64 14.3.0 h85bb3a7_105 >> >> conda-forge >> >> libgcc-ng 15.1.0 h69a702a_5 >> >> conda-forge >> >> libgd 2.3.3 h6f5c62b_11 >> >> conda-forge >> >> libgfortran 15.1.0 h69a702a_5 >> >> conda-forge >> >> libgfortran-ng 15.1.0 h69a702a_5 >> >> conda-forge >> >> libgfortran5 15.1.0 hcea5267_5 >> >> conda-forge >> >> libgl 1.7.0 ha4b6fd6_2 >> >> conda-forge >> >> libglib 2.84.3 hf39c6af_0 >> >> conda-forge >> >> libglvnd 1.7.0 ha4b6fd6_2 >> >> conda-forge >> >> libglx 1.7.0 ha4b6fd6_2 >> >> conda-forge >> >> libgomp 15.1.0 h767d61c_5 >> >> conda-forge >> >> libhomfly 1.03 hb03c661_0 >> >> conda-forge >> >> libiconv 1.18 h3b78370_2 >> >> conda-forge >> >> libjpeg-turbo 3.1.0 hb9d3cd8_0 >> >> conda-forge >> >> liblapack 3.9.0 36_h47877c9_openblas >> >> conda-forge >> >> liblapacke 3.9.0 36_h6ae95b6_openblas >> >> conda-forge >> >> libllvm20 20.1.8 hecd9e04_0 >> >> conda-forge >> >> libllvm21 21.1.0 hecd9e04_0 >> >> conda-forge >> >> liblzma 5.8.1 hb9d3cd8_2 >> >> conda-forge >> >> liblzma-devel 5.8.1 hb9d3cd8_2 >> >> conda-forge >> >> libnghttp2 1.67.0 had1ee68_0 >> >> conda-forge >> >> libnsl 2.0.1 hb9d3cd8_1 >> >> conda-forge >> >> libntlm 1.8 hb9d3cd8_0 >> >> conda-forge >> >> libopenblas 0.3.30 pthreads_h94d23a6_2 >> >> conda-forge >> >> libopengl 1.7.0 ha4b6fd6_2 >> >> conda-forge >> >> libpciaccess 0.18 hb9d3cd8_0 >> >> conda-forge >> >> libpng 1.6.50 h421ea60_1 >> >> conda-forge >> >> libpq 17.6 h3675c94_2 >> >> conda-forge >> >> libsanitizer 14.3.0 hd08acf3_5 >> >> conda-forge >> >> libsemigroups 2.7.4 h5fb1983_0 >> >> conda-forge >> >> libsodium 1.0.20 h4ab18f5_0 >> >> conda-forge >> >> libsqlite 3.50.4 h0c1763c_0 >> >> conda-forge >> >> libssh2 1.11.1 hcf80075_0 >> >> conda-forge >> >> libstdcxx 15.1.0 h8f9b012_5 >> >> conda-forge >> >> libstdcxx-devel_linux-64 14.3.0 h85bb3a7_105 >> >> conda-forge >> >> libstdcxx-ng 15.1.0 h4852527_5 >> >> conda-forge >> >> libtiff 4.7.1 h8261f1e_0 >> >> conda-forge >> >> libuuid 2.41.2 he9a06e4_0 >> >> conda-forge >> >> libwebp-base 1.6.0 hd42ef1d_0 >> >> conda-forge >> >> libxcb 1.17.0 h8a09558_0 >> >> conda-forge >> >> libxcrypt 4.4.36 hd590300_1 >> >> conda-forge >> >> libxkbcommon 1.11.0 he8b52b9_0 >> >> conda-forge >> >> libxml2 2.13.8 h04c0eec_1 >> >> conda-forge >> >> libxslt 1.1.43 h7a3aeb2_0 >> >> conda-forge >> >> libzlib 1.3.1 hb9d3cd8_2 >> >> conda-forge >> >> linbox 1.7.1 he8fce6e_0 >> >> conda-forge >> >> line_profiler 5.0.0 pypi_0 pypi >> >> >> >> lrcalc 2.1 h5888daf_7 >> >> conda-forge >> >> lrslib 71.b h8aaf9c6_1 >> >> conda-forge >> >> m4 1.4.20 hb9d3cd8_0 >> >> conda-forge >> >> m4ri 20250128 h36e74d4_0 >> >> conda-forge >> >> m4rie 20250128 h36e74d4_0 >> >> conda-forge >> >> make 4.4.1 hb9d3cd8_2 >> >> conda-forge >> >> markupsafe 3.0.3 py312h8a5da7c_0 >> >> conda-forge >> >> matplotlib 3.10.6 py312h7900ff3_1 >> >> conda-forge >> >> matplotlib-base 3.10.6 py312he3d6523_1 >> >> conda-forge >> >> matplotlib-inline 0.1.7 pyhd8ed1ab_1 >> >> conda-forge >> >> maxima 5.47.0 h75482ee_3 >> >> conda-forge >> >> mccabe 0.7.0 pyhd8ed1ab_1 >> >> conda-forge >> >> memory-allocator 0.1.3 py312h66e93f0_1 >> >> conda-forge >> >> meson 1.9.0 pyhcf101f3_0 >> >> conda-forge >> >> meson-python 0.18.0 pyh70fd9c4_0 >> >> conda-forge >> >> mistune 3.1.4 pyhcf101f3_0 >> >> conda-forge >> >> more-itertools 10.8.0 pyhd8ed1ab_0 >> >> conda-forge >> >> mpc 1.3.1 h24ddda3_1 >> >> conda-forge >> >> mpfi 1.5.4 h9f54685_1001 >> >> conda-forge >> >> mpfr 4.2.1 h90cbb55_3 >> >> conda-forge >> >> mpmath 1.3.0 pyhd8ed1ab_1 >> >> conda-forge >> >> msgpack-python 1.1.1 py312hd9148b4_1 >> >> conda-forge >> >> munkres 1.1.4 pyhd8ed1ab_1 >> >> conda-forge >> >> nauty 2.9.1 hb03c661_0 >> >> conda-forge >> >> nbclient 0.10.2 pyhd8ed1ab_0 >> >> conda-forge >> >> nbconvert 7.16.6 hb482800_0 >> >> conda-forge >> >> nbconvert-core 7.16.6 pyh29332c3_0 >> >> conda-forge >> >> nbconvert-pandoc 7.16.6 hed9df3c_0 >> >> conda-forge >> >> nbformat 5.10.4 pyhd8ed1ab_1 >> >> conda-forge >> >> ncurses 6.5 h2d0b736_3 >> >> conda-forge >> >> nest-asyncio 1.6.0 pyhd8ed1ab_1 >> >> conda-forge >> >> networkx 3.5 pyhe01879c_0 >> >> conda-forge >> >> ninja 1.13.1 h171cf75_0 >> >> conda-forge >> >> ntl 11.4.3 hef3c4d3_1 >> >> conda-forge >> >> numpy 2.3.3 py312h33ff503_0 >> >> conda-forge >> >> openblas 0.3.30 pthreads_h6ec200e_2 >> >> conda-forge >> >> openjpeg 2.5.4 h55fea9a_0 >> >> conda-forge >> >> openldap 2.6.10 he970967_0 >> >> conda-forge >> >> openssl 3.5.4 h26f9b46_0 >> >> conda-forge >> >> packaging 25.0 pyh29332c3_1 >> >> conda-forge >> >> palp 2.21 hb03c661_0 >> >> conda-forge >> >> pandoc 3.8.1 ha770c72_0 >> >> conda-forge >> >> pandocfilters 1.5.0 pyhd8ed1ab_0 >> >> conda-forge >> >> pango 1.56.4 hadf4263_0 >> >> conda-forge >> >> pari 2.17.2 ha40142e_5_pthread >> >> conda-forge >> >> pari-elldata 0.0.20161017 0 >> >> conda-forge >> >> pari-galdata 0.0.20180411 0 >> >> conda-forge >> >> pari-seadata 0.0.20090618 0 >> >> conda-forge >> >> pari-seadata-small 0.0.20090618 0 >> >> conda-forge >> >> parso 0.8.5 pyhcf101f3_0 >> >> conda-forge >> >> pcre2 10.45 hc749103_0 >> >> conda-forge >> >> perl 5.32.1 7_hd590300_perl5 >> >> conda-forge >> >> pexpect 4.9.0 pyhd8ed1ab_1 >> >> conda-forge >> >> pickleshare 0.7.5 pyhd8ed1ab_1004 >> >> conda-forge >> >> pillow 11.3.0 py312h7b42cdd_3 >> >> conda-forge >> >> pip 25.2 pyh8b19718_0 >> >> conda-forge >> >> pixman 0.46.4 h54a6638_1 >> >> conda-forge >> >> pkg-config 0.29.2 h4bc722e_1009 >> >> conda-forge >> >> pkgconfig 1.5.5 pyhd8ed1ab_5 >> >> conda-forge >> >> pkginfo 1.12.1.2 pyhd8ed1ab_0 >> >> conda-forge >> >> planarity 3.0.2.0 hd590300_0 >> >> conda-forge >> >> platformdirs 4.4.0 pyhcf101f3_0 >> >> conda-forge >> >> pluggy 1.6.0 pyhd8ed1ab_0 >> >> conda-forge >> >> ppl 1.2 h6ec01c2_1006 >> >> conda-forge >> >> pplpy 0.8.9 py312h7383a07_2 >> >> conda-forge >> >> primecount 7.19 h530483c_0 >> >> conda-forge >> >> primecountpy 0.1.1 py312hd9148b4_0 >> >> conda-forge >> >> primesieve 12.8 h5888daf_0 >> >> conda-forge >> >> progressbar2 4.5.0 pyhd8ed1ab_1 >> >> conda-forge >> >> prompt-toolkit 3.0.52 pyha770c72_0 >> >> conda-forge >> >> psutil 7.1.0 py312h4c3975b_0 >> >> conda-forge >> >> pthread-stubs 0.4 hb9d3cd8_1002 >> >> conda-forge >> >> ptyprocess 0.7.0 pyhd8ed1ab_1 >> >> conda-forge >> >> pure_eval 0.2.3 pyhd8ed1ab_1 >> >> conda-forge >> >> pycodestyle 2.14.0 pyhd8ed1ab_0 >> >> conda-forge >> >> pycosat 0.6.6 py312h4c3975b_3 >> >> conda-forge >> >> pycparser 2.22 pyh29332c3_1 >> >> conda-forge >> >> pydantic 2.11.10 pyh3cfb1c2_0 >> >> conda-forge >> >> pydantic-core 2.33.2 py312h680f630_0 >> >> conda-forge >> >> pyflakes 3.4.0 pyhd8ed1ab_0 >> >> conda-forge >> >> pygithub 2.8.1 pyhd8ed1ab_0 >> >> conda-forge >> >> pygments 2.19.2 pyhd8ed1ab_0 >> >> conda-forge >> >> pyjwt 2.10.1 pyhd8ed1ab_0 >> >> conda-forge >> >> pynacl 1.6.0 py312h4c3975b_0 >> >> conda-forge >> >> pyparsing 3.2.5 pyhcf101f3_0 >> >> conda-forge >> >> pyproject-metadata 0.9.1 pyhd8ed1ab_0 >> >> conda-forge >> >> pyproject_hooks 1.2.0 pyhd8ed1ab_1 >> >> conda-forge >> >> pyside6 6.9.2 py312h5654102_1 >> >> conda-forge >> >> pysocks 1.7.1 pyha55dd90_7 >> >> conda-forge >> >> pytest 8.4.2 pyhd8ed1ab_0 >> >> conda-forge >> >> pytest-xdist 3.8.0 pyhd8ed1ab_0 >> >> conda-forge >> >> python 3.12.11 h9e4cc4f_0_cpython >> >> conda-forge >> >> python-build 1.3.0 pyhff2d567_0 >> >> conda-forge >> >> python-dateutil 2.9.0.post0 pyhe01879c_2 >> >> conda-forge >> >> python-fastjsonschema 2.21.2 pyhe01879c_0 >> >> conda-forge >> >> python-gil 3.12.11 hd8ed1ab_0 >> >> conda-forge >> >> python-installer 0.7.0 pyhff2d567_1 >> >> conda-forge >> >> python-lrcalc 2.1 py312h2ec8cdc_7 >> >> conda-forge >> >> python-symengine 0.14.0 py312h406a2a9_1 >> >> conda-forge >> >> python-utils 3.9.1 pyhff2d567_1 >> >> conda-forge >> >> python_abi 3.12 8_cp312 >> >> conda-forge >> >> pytz 2025.2 pyhd8ed1ab_0 >> >> conda-forge >> >> pyyaml 6.0.3 py312h8a5da7c_0 >> >> conda-forge >> >> pyzmq 27.1.0 py312hfb55c3c_0 >> >> conda-forge >> >> qd 2.3.22 h2cc385e_1004 >> >> conda-forge >> >> qhull 2020.2 h434a139_5 >> >> conda-forge >> >> qt6-main 6.9.2 h3fc9a0a_0 >> >> conda-forge >> >> r-base 4.2.3 h2d83a99_19 >> >> conda-forge >> >> r-lattice 0.22_6 r42h57805ef_0 >> >> conda-forge >> >> rapidfuzz 3.14.1 py312h1289d80_0 >> >> conda-forge >> >> readline 8.2 h8c095d6_2 >> >> conda-forge >> >> referencing 0.36.2 pyh29332c3_0 >> >> conda-forge >> >> requests 2.32.5 pyhd8ed1ab_0 >> >> conda-forge >> >> requests-toolbelt 1.0.0 pyhd8ed1ab_1 >> >> conda-forge >> >> restructuredtext_lint 1.4.0 pyhd8ed1ab_1 >> >> conda-forge >> >> roman-numerals-py 3.1.0 pyhd8ed1ab_0 >> >> conda-forge >> >> rpds-py 0.27.1 py312h868fb18_1 >> >> conda-forge >> >> rpy2 3.5.11 py312r42hc7c0aa3_3 >> >> conda-forge >> >> ruamel.yaml 0.18.15 py312h4c3975b_1 >> >> conda-forge >> >> ruamel.yaml.clib 0.2.12 py312h4c3975b_1 >> >> conda-forge >> >> ruamel.yaml.jinja2 0.2.7 pyhd8ed1ab_1 >> >> conda-forge >> >> ruff 0.13.3 ha3a3aed_0 >> >> conda-forge >> >> rw 0.9 hd590300_2 >> >> conda-forge >> >> sagemath 10.8b8 pypi_0 pypi >> >> >> >> sagemath-db-elliptic-curves 0.8.1 hecc5488_0 >> >> conda-forge >> >> sagemath-db-graphs 20210214 hd8ed1ab_0 >> >> conda-forge >> >> sagemath-db-polytopes 20170220 1 >> >> conda-forge >> >> scipy 1.16.2 py312h7a1785b_0 >> >> conda-forge >> >> secretstorage 3.4.0 py312h7900ff3_0 >> >> conda-forge >> >> sed 4.9 h6688a6e_0 >> >> conda-forge >> >> semver 3.0.4 pyhd8ed1ab_0 >> >> conda-forge >> >> setuptools 80.9.0 pyhff2d567_0 >> >> conda-forge >> >> shellingham 1.5.4 pyhd8ed1ab_1 >> >> conda-forge >> >> simplegeneric 0.8.1 pyhd8ed1ab_2 >> >> conda-forge >> >> singular 4.4.1 h7ee4ccf_1 >> >> conda-forge >> >> sirocco 2.1.0 hd7ee782_1 >> >> conda-forge >> >> six 1.17.0 pyhe01879c_1 >> >> conda-forge >> >> smmap 5.0.2 pyhd8ed1ab_0 >> >> conda-forge >> >> snowballstemmer 3.0.1 pyhd8ed1ab_0 >> >> conda-forge >> >> soupsieve 2.8.3 pyhd8ed1ab_0 >> >> conda-forge >> >> sphinx 8.2.3 pyhd8ed1ab_0 >> >> conda-forge >> >> sphinx-basic-ng 1.0.0b2 pyhd8ed1ab_3 >> >> conda-forge >> >> sphinx-copybutton 0.5.2 pyhd8ed1ab_1 >> >> conda-forge >> >> sphinx-inline-tabs 2023.4.21 pyhd8ed1ab_1 >> >> conda-forge >> >> sphinxcontrib-applehelp 2.0.0 pyhd8ed1ab_1 >> >> conda-forge >> >> sphinxcontrib-devhelp 2.0.0 pyhd8ed1ab_1 >> >> conda-forge >> >> sphinxcontrib-htmlhelp 2.1.0 pyhd8ed1ab_1 >> >> conda-forge >> >> sphinxcontrib-jsmath 1.0.1 pyhd8ed1ab_1 >> >> conda-forge >> >> sphinxcontrib-qthelp 2.0.0 pyhd8ed1ab_1 >> >> conda-forge >> >> sphinxcontrib-serializinghtml 1.1.10 pyhd8ed1ab_1 >> >> conda-forge >> >> sqlite 3.50.4 hbc0de68_0 >> >> conda-forge >> >> stack_data 0.6.3 pyhd8ed1ab_1 >> >> conda-forge >> >> stdlib-list 0.11.1 pyhd8ed1ab_0 >> >> conda-forge >> >> symengine 0.14.0 h064106a_1 >> >> conda-forge >> >> symmetrica 3.1.0 hb03c661_0 >> >> conda-forge >> >> sympow 2.023.6 h3028977_4 >> >> conda-forge >> >> sympy 1.14.0 pyh2585a3b_105 >> >> conda-forge >> >> sysroot_linux-64 2.28 h4ee821c_8 >> >> conda-forge >> >> tachyon 0.99b6 hba7d16a_1002 >> >> conda-forge >> >> tinycss2 1.4.0 pyhd8ed1ab_0 >> >> conda-forge >> >> tk 8.6.13 noxft_hd72426e_102 >> >> conda-forge >> >> tktable 2.10 h8d826fa_7 >> >> conda-forge >> >> toml 0.10.2 pyhd8ed1ab_1 >> >> conda-forge >> >> tomli 2.2.1 pyhe01879c_2 >> >> conda-forge >> >> tomli-w 1.2.0 pyhd8ed1ab_0 >> >> conda-forge >> >> tomlkit 0.13.3 pyha770c72_0 >> >> conda-forge >> >> tornado 6.5.2 py312h4c3975b_1 >> >> conda-forge >> >> tqdm 4.67.1 pyhd8ed1ab_1 >> >> conda-forge >> >> traitlets 5.14.3 pyhd8ed1ab_1 >> >> conda-forge >> >> trove-classifiers 2025.9.11.17 pyhd8ed1ab_0 >> >> conda-forge >> >> typing-extensions 4.15.0 h396c80c_0 >> >> conda-forge >> >> typing-inspection 0.4.2 pyhd8ed1ab_0 >> >> conda-forge >> >> typing_extensions 4.15.0 pyhcf101f3_0 >> >> conda-forge >> >> tzdata 2025b h78e105d_0 >> >> conda-forge >> >> tzlocal 5.3.1 pyh8f84b5b_0 >> >> conda-forge >> >> unicodedata2 16.0.0 py312h4c3975b_1 >> >> conda-forge >> >> urllib3 2.5.0 pyhd8ed1ab_0 >> >> conda-forge >> >> uv 0.8.22 h30787bc_0 >> >> conda-forge >> >> virtualenv 20.34.0 pyhd8ed1ab_0 >> >> conda-forge >> >> wayland 1.24.0 h3e06ad9_0 >> >> conda-forge >> >> wcwidth 0.2.14 pyhd8ed1ab_0 >> >> conda-forge >> >> webencodings 0.5.1 pyhd8ed1ab_3 >> >> conda-forge >> >> wheel 0.45.1 pyhd8ed1ab_1 >> >> conda-forge >> >> widgetsnbextension 4.0.14 pyhd8ed1ab_0 >> >> conda-forge >> >> wrapt 1.17.3 py312h4c3975b_1 >> >> conda-forge >> >> xcb-util 0.4.1 h4f16b4b_2 >> >> conda-forge >> >> xcb-util-cursor 0.1.5 hb9d3cd8_0 >> >> conda-forge >> >> xcb-util-image 0.4.0 hb711507_2 >> >> conda-forge >> >> xcb-util-keysyms 0.4.1 hb711507_0 >> >> conda-forge >> >> xcb-util-renderutil 0.3.10 hb711507_0 >> >> conda-forge >> >> xcb-util-wm 0.4.2 hb711507_0 >> >> conda-forge >> >> xkeyboard-config 2.46 hb03c661_0 >> >> conda-forge >> >> xorg-libice 1.1.2 hb9d3cd8_0 >> >> conda-forge >> >> xorg-libsm 1.2.6 he73a12e_0 >> >> conda-forge >> >> xorg-libx11 1.8.12 h4f16b4b_0 >> >> conda-forge >> >> xorg-libxau 1.0.12 hb9d3cd8_0 >> >> conda-forge >> >> xorg-libxcomposite 0.4.6 hb9d3cd8_2 >> >> conda-forge >> >> xorg-libxcursor 1.2.3 hb9d3cd8_0 >> >> conda-forge >> >> xorg-libxdamage 1.1.6 hb9d3cd8_0 >> >> conda-forge >> >> xorg-libxdmcp 1.1.5 hb9d3cd8_0 >> >> conda-forge >> >> xorg-libxext 1.3.6 hb9d3cd8_0 >> >> conda-forge >> >> xorg-libxfixes 6.0.2 hb03c661_0 >> >> conda-forge >> >> xorg-libxi 1.8.2 hb9d3cd8_0 >> >> conda-forge >> >> xorg-libxrandr 1.5.4 hb9d3cd8_0 >> >> conda-forge >> >> xorg-libxrender 0.9.12 hb9d3cd8_0 >> >> conda-forge >> >> xorg-libxt 1.3.1 hb9d3cd8_0 >> >> conda-forge >> >> xorg-libxtst 1.2.5 hb9d3cd8_3 >> >> conda-forge >> >> xorg-libxxf86vm 1.1.6 hb9d3cd8_0 >> >> conda-forge >> >> xz 5.8.1 hbcc6ac9_2 >> >> conda-forge >> >> xz-gpl-tools 5.8.1 hbcc6ac9_2 >> >> conda-forge >> >> xz-tools 5.8.1 hb9d3cd8_2 >> >> conda-forge >> >> yaml 0.2.5 h280c20c_3 >> >> conda-forge >> >> zeromq 4.3.5 h387f397_9 >> >> conda-forge >> >> zipp 3.23.0 pyhd8ed1ab_0 >> >> conda-forge >> >> zlib 1.3.1 hb9d3cd8_2 >> >> conda-forge >> >> zstandard 0.25.0 py312h5253ce2_0 >> >> conda-forge >> >> zstd 1.5.7 hb8e6e7a_2 >> >> conda-forge >> >> >> >> >> >> On Thursday, 29 January 2026 at 23:45:36 UTC+1 [email protected] >> wrote: >> >> >> >>> It might be trying to get an online resource, a GAP database of >> groups >> >>> (e.g. altasrep). >> >>> What GAP packages are installed? >> >>> >> >>> >> >>> >> >>> On January 29, 2026 4:02:45 PM CST, 'Martin R' via sage-devel < >> >>> [email protected]> wrote: >> >>> >> >>>> I am on ubuntu, with conda, and have an extremely strange situation: >> >>>> >> >>>> (sage-dev) martin@toolbox:~/sage-trac$ ./sage -t --verbose >> >>>> src/sage/groups/perm_gps/permgroup.py >> >>>> Running doctests with ID 2026-01-29-22-58-01-92547518. >> >>>> Git branch: develop >> >>>> Git ref: 10.9.beta4 >> >>>> Running with SAGE_LOCAL='/home/martin/miniforge3/envs/sage-dev' >> >>>> Using --optional=conda,pip,sage,symengine >> >>>> Features to be detected: >> >>>> >> 32_bit,4ti2,benzene,bliss,buckygen,conway_polynomials,coxeter3,csdp,cvxopt,cvxopt,database_cremona_ellcurve,database_cremona_mini_el >> >> >> >>>> >> >>>> >> lcurve,database_cubic_hecke,database_ellcurves,database_graphs,database_jones_numfield,database_knotinfo,dot2tex,dvipng,ecm,flatter,fpylll,fricas,gap_package >> >> >> >>>> >> >>>> >> _atlasrep,gap_package_design,gap_package_grape,gap_package_guava,gap_package_hap,gap_package_polenta,gap_package_polycyclic,gap_package_qpa,gap_package_quagr >> >> >> >>>> >> >>>> >> oup,gfan,giac,glucose,graphviz,imagemagick,info,ipython,jmol,jupymake,jupyter_sphinx,kenzo,khoca,kissat,latte_int,lrcalc_python,lrslib,mathics,matroid_databa >> >> >> >>>> >> >>>> >> se,mcqd,meataxe,meson_editable,mpmath,msolve,nauty,networkx,numpy,palp,pandoc,pdf2svg,pdftocairo,pexpect,phitigra,pillow,plantri,polytopes_db,polytopes_db_4d >> >> >> >>>> >> >>>> >> ,pplpy,primecountpy,ptyprocess,pycosat,pycryptosat,pynormaliz,pyparsing,python_igraph,regina,requests,rpy2,rubiks,sage.combinat,sage.geometry.polyhedron,sage >> >> >> >>>> >> >>>> >> .graphs,sage.groups,sage.libs.braiding,sage.libs.ecl,sage.libs.flint,sage.libs.gap,sage.libs.giac,sage.libs.homfly,sage.libs.linbox,sage.libs.m4ri,sage.libs. >> >> >> >>>> >> >>>> >> ntl,sage.libs.pari,sage.libs.singular,sage.misc.cython,sage.modular,sage.modules,sage.numerical.mip,sage.plot,sage.rings.complex_double,sage.rings.finite_rin >> >> >> >>>> >> >>>> >> gs,sage.rings.function_field,sage.rings.number_field,sage.rings.padics,sage.rings.polynomial.pbori,sage.rings.real_double,sage.rings.real_mpfr,sage.sat,sage. >> >> >> >>>> >> schemes,sage.symbolic,sage_numerical_backends_coin,sagemath_doc_html,scipy,singular,sirocco,sloane_database,sphinx,symengine_py,sympy,tdlib,threejs,topcom >> >> >> >>>> >> >>>> Doctesting 1 file. >> >>>> src/bin/sage -t --warn-long 5.0 >> >>>> --random-seed=10763884564472103541661530835467931176 >> >>>> src/sage/groups/perm_gps/permgroup.py >> >>>> >> >>>> After this, nothing happens anymore, and even more surprisingly, the >> cpu >> >>>> is idle. >> >>>> >> >>>> cubegroup.py in the same directory works, also >> permgroup_element.pyx, >> >>>> but permgroup_named.py does not. >> >>>> >> >>>> Any ideas? >> >>>> >> >>>> Martin >> >>>> >> >>>> >> > >> >> -- You received this message because you are subscribed to the Google Groups "sage-devel" group. 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