#18229: Upgrade R to 3.2.0
-------------------------------------+-------------------------------------
Reporter: charpent | Owner: charpent
Type: enhancement | Status: needs_work
Priority: minor | Milestone: sage-6.7
Component: packages: | Resolution:
standard | Merged in:
Keywords: r-project | Reviewers: Vincent Delecroix
Authors: Emmanuel | Work issues: Fix detection of
Charpentier | bzlib
Report Upstream: N/A | Commit:
Branch: | ab208a4e69834c786a2f0d4ff5a2626776db4d62
u/charpent/upgrade_r_to_3_1_3 | Stopgaps:
Dependencies: #18254 |
-------------------------------------+-------------------------------------
Comment (by leif):
In the Makefile (in `src/src/main`) of the last attempt, we have:
{{{
## use an explicit library: there might be an unsatisfactory -lz around
R_ZLIBS = # ../extra/zlib/libz.a
R_BZLIBS = ../extra/bzip2/libbz2.a
R_PCRE = ../extra/pcre/libpcre.a
R_TRE = ../extra/tre/libtre.a
R_XDR = # ../extra/xdr/libxdr.a
R_XZ = ../extra/xz/liblzma.a
R_LIBINTL = # ../extra/intl/libintl.a
R_TZONE = # ../extra/tzone/libtz.a
MAIN_LIBS = ../unix/libunix.a ../appl/libappl.a ../nmath/libnmath.a
MAIN_OBJS = `ls ../unix/*.o ../appl/*.o ../nmath/*.o`
EXTRA_STATIC_LIBS = \
$(R_ZLIBS) $(R_BZLIBS) $(R_PCRE) $(R_TRE) $(R_XDR) $(R_XZ) $(R_LIBINTL)
$(R_TZONE)
STATIC_LIBS = $(MAIN_LIBS) $(EXTRA_STATIC_LIBS)
EXTRA_LIBS = $(BLAS_LIBS) $(FLIBS) $(R_XTRA_LIBS) $(READLINE_LIBS)
$(LIBS)
R_binary = R.bin
R_bin_OBJECTS = Rmain.o #$(OBJECTS)
#R_bin_LDADD = $(MAIN_OBJS) $(EXTRA_STATIC_LIBS) $(EXTRA_LIBS)
## Linked against -lRblas becasue -lR is and otherwise ld complains.
R_bin_LDADD = -lR #-lRblas
R_bin_DEPENDENCIES =# libR.a # $(top_builddir)/etc/R.exp
libR_la = libR$(DYLIB_EXT)
libR_la_OBJECTS = $(OBJECTS)
libR_la_LIBADD = $(MAIN_OBJS) $(EXTRA_STATIC_LIBS) $(EXTRA_LIBS) #
-Wl,-bE:$(top_builddir)/etc/R.exp
libR_la_DEPENDENCIES = $(STATIC_LIBS) $(R_TZONE) #
$(top_builddir)/etc/R.exp
}}}
so somehow `LIBS` got messed up (libz dropped) somewhere on the way.
--
Ticket URL: <http://trac.sagemath.org/ticket/18229#comment:59>
Sage <http://www.sagemath.org>
Sage: Creating a Viable Open Source Alternative to Magma, Maple, Mathematica,
and MATLAB
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