#6532: Make R build with recommended packages
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Reporter: wdj | Owner: jason
Type: defect | Status: needs_review
Priority: major | Milestone: sage-4.3.1
Component: packages | Keywords:
Author: Karl-Dieter Crisman | Upstream: N/A
Reviewer: | Merged:
Work_issues: |
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Comment(by wjp):
It looks like the failing tests on my system were due to the {{{Matrix}}}
package failing to build correctly because I hadn't set {{{SAGE_FORTRAN}}}
properly before building sage. After doing that right, {{{spkg-check}}}
ran without any trouble.
This is the snippet from the build log that shows the problem:
{{{
** building package indices ...
Loading required package: Matrix
Error in dyn.load(file, DLLpath = DLLpath, ...) :
unable to load shared library
'/data/sage/sage-4.3.1.rc0/spkg/standard/r-2.10.1/src/library/Matrix/libs/Matrix.so':
/data/sage/sage-4.3.1.rc0/local/lib/gcc-lib/i686-pc-linux-
gnu/4.0.3/libgcc_s.so.1: version `GCC_4.2.0' not found (required by
/usr/lib/libstdc++.so.6)
Error : require(Matrix, save = FALSE) is not TRUE
ERROR: installing package indices failed
* removing
‘/data/sage/sage-4.3.1.rc0/spkg/standard/r-2.10.1/src/library/Matrix’
make[2]: *** [Matrix.ts] Error 1
make[2]: Leaving directory
`/data/sage/sage-4.3.1.rc0/spkg/standard/r-2.10.1/src/src/library/Recommended'
}}}
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Ticket URL: <http://trac.sagemath.org/sage_trac/ticket/6532#comment:13>
Sage <http://www.sagemath.org>
Sage: Creating a Viable Open Source Alternative to Magma, Maple, Mathematica,
and MATLAB
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