#8192: Update PolyBoRi to newest upstream release
--------------------------+-------------------------------------------------
Reporter: malb | Owner: PolyBoRi
Type: enhancement | Status: closed
Priority: major | Milestone: sage-4.4.1
Component: packages | Resolution: fixed
Keywords: | Author: Alexander Dreyer, Burcin Erocal
Upstream: N/A | Reviewer: Martin Albrecht
Merged: 4.4.1.alpha1 | Work_issues:
--------------------------+-------------------------------------------------
Comment(by mvngu):
From [http://groups.google.com/group/sage-
devel/browse_thread/thread/ff294013a41ea05c sage-devel]:
[[BR]]
Sage 4.4.1.alpha2 contains two !PolyBoRi spkg's:
* polybori-0.6.3-20091028.spkg
* polybori-0.6.4.spkg
I think polybori-0.6.4.spkg is the newer one, so I deleted the other one
from `SAGE_ROOT/spkg/standard/`. Here's a diff between the `spkg-install`
of polybori-0.6.3-20091028.spkg and polybori-0.6.4.spkg:
{{{
#!diff
[mv...@sage mvngu]$ diff -Naur polybori-0.6.3-20091028/spkg-install
polybori-0.6.4.p0/spkg-install
--- polybori-0.6.3-20091028/spkg-install 2009-05-17
10:31:16.000000000 -0700
+++ polybori-0.6.4.p0/spkg-install 2010-04-29 07:10:46.000000000
-0700
@@ -6,14 +6,14 @@
exit 1
fi
-PBDIR=polybori-0.6
+PBDIR=polybori-0.6.4
WORKDIR=${PWD}/src
SCONS=scons
# For some strange reason the installed boost in $SAGE_LOCAL causes
# make install failures, so copy it over.
-mkdir src/boost_1_34_1.cropped
-cp -r $SAGE_LOCAL/include/boost src/boost_1_34_1.cropped
+#mkdir src/boost_1_34_1.cropped
+#cp -r $SAGE_LOCAL/include/boost src/boost_1_34_1.cropped
BOOSTDIR=boost_1_34_1.cropped
patch()
@@ -26,9 +26,6 @@
cp patches/SConstruct src/${PBDIR}/SConstruct
cp patches/PyPolyBoRi.py src/${PBDIR}/pyroot/polybori
-
- # workaround so will build on cygwin
- cp patches/cpu_stats.c src/${PBDIR}/Cudd/util/cpu_stats.c
}
@@ -68,7 +65,7 @@
remove_dylib()
{
- # linking dynmic libraries causes segfaults at exit (see #2822)
+ # linking dynamic libraries causes segfaults at exit (see #2822)
if [ `uname` = "Darwin" ]; then
rm -f $SAGE_LOCAL/lib/libpolybori.dylib
rm -f $SAGE_LOCAL/lib/libpboriCudd.dylib
@@ -101,9 +98,3 @@
echo "Removing dynamic libraries..."
remove_dylib
echo "Done removing dynamic libraries."
-
-# force a rebuild of the PolyBoRi extension
-if [ -f $SAGE_ROOT/devel/sage/sage/rings/polynomial/pbori.pyx ]; then
- touch $SAGE_ROOT/devel/sage/sage/rings/polynomial/pbori.pyx
-fi
-
}}}
I replaced polybori-0.6.4.spkg with
http://sage.math.washington.edu/home/mvngu/spkg/standard/polybori/polybori-0.6.4.p0.spkg
The latter spkg restores the command "remove_dynlib". I then built Sage
4.4.1.alpha2 from scratch on sage.math with polybori-0.6.4.p0.spkg.
Doctesting resulted in the following failure:
{{{
#!sh
[mv...@sage sage-4.4.1.alpha2]$ ./sage -t -long local/lib/python2.6/site-
packages/sagenb-0.8-py2.6.egg/sagenb/misc/misc.py
sage -t -long "local/lib/python2.6/site-
packages/sagenb-0.8-py2.6.egg/sagenb/misc/misc.py"
**********************************************************************
File "/dev/shm/mvngu/sandbox/sage-4.4.1.alpha2/local/lib/python2.6/site-
packages/sagenb-0.8-py2.6.egg/sagenb/misc/misc.py", line 109:
sage: print "ignore this";
sage.server.misc.find_next_available_port('', 9000, verbose=False) #
random output -- depends on network
Exception raised:
Traceback (most recent call last):
File
"/dev/shm/mvngu/sandbox/sage-4.4.1.alpha2/local/bin/ncadoctest.py", line
1231, in run_one_test
self.run_one_example(test, example, filename, compileflags)
File
"/dev/shm/mvngu/sandbox/sage-4.4.1.alpha2/local/bin/sagedoctest.py", line
38, in run_one_example
OrigDocTestRunner.run_one_example(self, test, example, filename,
compileflags)
File
"/dev/shm/mvngu/sandbox/sage-4.4.1.alpha2/local/bin/ncadoctest.py", line
1172, in run_one_example
compileflags, 1) in test.globs
File "<doctest __main__.example_2[2]>", line 1, in <module>
print "ignore this";
sage.server.misc.find_next_available_port('', Integer(9000),
verbose=False) # random output -- depends on network###line 109:
sage: print "ignore this";
sage.server.misc.find_next_available_port('', 9000, verbose=False) #
random output -- depends on network
File "/dev/shm/mvngu/sandbox/sage-4.4.1.alpha2/local/lib/python
/site-packages/sage/server/misc.py", line 105, in find_next_available_port
for port in range(start, start+max_tries+1):
File "element.pyx", line 1271, in
sage.structure.element.RingElement.__add__
(sage/structure/element.c:10830)
File "coerce.pyx", line 765, in
sage.structure.coerce.CoercionModel_cache_maps.bin_op
(sage/structure/coerce.c:6966)
TypeError: unsupported operand parent(s) for '+': '<type 'str'>' and
'Integer Ring'
}}}
I have wrapped up a sage.math binary of this patched version of Sage
4.4.1.alpha2. You can find it at
http://sage.math.washington.edu/home/mvngu/sage.math-bin/sage-4.4.1.alpha2
-patched-sage.math.washington.edu-x86_64-Linux.tar.gz
I removed the directory
`SAGE_ROOT/devel/sage-main/doc/en/thematic_tutorials/`
and wrapped up a source distribution, which can be found at
http://sage.math.washington.edu/home/mvngu/sage-
src/sage-4.4.1.alpha2-patched.tar
--
Ticket URL: <http://trac.sagemath.org/sage_trac/ticket/8192#comment:31>
Sage <http://www.sagemath.org>
Sage: Creating a Viable Open Source Alternative to Magma, Maple, Mathematica,
and MATLAB
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