#9201: Add missing R modules and make `spkg-check` pass on Solaris
-----------------------+----------------------------------------------------
Reporter: mpatel | Owner: drkirkby
Type: defect | Status: new
Priority: major | Milestone:
Component: solaris | Keywords:
Author: | Upstream: N/A
Reviewer: | Merged:
Work_issues: |
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Some R modules aren't built/installed on t2. This makes builds fail when
`SAGE_CHECK` is set. From [comment:ticket:8306:67 this comment] at #8306:
Running R's `make check` on t2 gives
{{{
Collecting examples for package `stats'
Extracting from parsed Rd's ..............................
Running examples in package `stats'
Error: testing 'stats' failed
Execution halted
make[5]: *** [test-Examples-Base] Error 1
}}}
Here's some detail from `src/tests/Examples/stats-Ex.Rout.fail`:
{{{
> contrasts(ffs) <- contr.sum(5, sparse=TRUE)[,1:2]; contrasts(ffs)
Error in .Diag(levels, sparse = sparse) :
contr*(.., sparse=TRUE) needs package "Matrix" correctly installed
Calls: contr.sum -> .Diag
Execution halted
}}}
[http://sage.math.washington.edu/home/mpatel/trac/8306/r-2.10.1.p2.log
This log] also shows that R's Matrix package isn't built/installed
successfully:
{{{
Loading required package: Matrix
Error in dyn.load(file, DLLpath = DLLpath, ...) :
unable to load shared library '/scratch/mpatel/sage-4.4.4.alpha0-j64
-par-chk/spkg/build/r-2.10.1.p2/src/library/Matrix/libs/Matrix.so':
ld.so.1: R: fatal: libgcc_s.so.1: open failed: No such file or
directory
Error : require(Matrix, save = FALSE) is not TRUE
}}}
Moreover, comparing the output of `ls SAGE_LOCAL/lib/R/library` on
sage.math and t2 builds indicates that we're also missing the class, mgcv,
nnet, rpart, spatial, and survival packages on t2.
--
Ticket URL: <http://trac.sagemath.org/sage_trac/ticket/9201>
Sage <http://www.sagemath.org>
Sage: Creating a Viable Open Source Alternative to Magma, Maple, Mathematica,
and MATLAB
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