#9201: Add missing R modules and make `spkg-check` pass on Solaris
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Reporter: mpatel | Owner: drkirkby
Type: defect | Status: new
Priority: major | Milestone:
Component: solaris | Keywords:
Author: | Upstream: N/A
Reviewer: | Merged:
Work_issues: |
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Comment(by drkirkby):
Replying to [comment:2 kcrisman]:
> Thanks for this important report. I am not sure why these are not
building, because all of these modules are 'Recommended' which we recently
re-enabled (and do exist elsewhere, as you noted). My guess is that these
other packages did not build because they rely on Matrix and it didn't
build.
>
> It's not quite clear to me where these doctests would go. The R
interface docs are supposed to test that the interface works, not that R
itself built properly. The easiest way to test these is simply
> {{{
> r.library('package_name')
> }}}
I've no idea where the tests would go, or how to write them. But IMHO, if
parts of R are non-functional (and it seems to be several parts), this
should be detected. We test that some python modules have built,
especially those that have known to be problematic, like _hashlib.
I'm still puzzled why R can't find libgcc_s.so.1, as it is definately
there. running
{{{
$ sage -sh
$ cd local/lib
$ ldd * | grep libgcc_s.so.1
}}}
I can see numerous parts of Sage link to libgcc_so.1. In fact, there are
127 of them! Here's the first one (certtool), if I run 'ldd' to see what
it is linked against
{{{
certtool:
libgnutls.so.26 =>
/export/home/drkirkby/32/sage-4.4.3/local/lib//libgnutls.so.26
libz.so =>
/export/home/drkirkby/32/sage-4.4.3/local/lib//libz.so
libgcrypt.so.11 =>
/export/home/drkirkby/32/sage-4.4.3/local/lib//libgcrypt.so.11
libgpg-error.so.0 =>
/export/home/drkirkby/32/sage-4.4.3/local/lib//libgpg-error.so.0
libreadline.so.6 =>
/export/home/drkirkby/32/sage-4.4.3/local/lib//libreadline.so.6
libnsl.so.1 => /lib/libnsl.so.1
libsocket.so.1 => /lib/libsocket.so.1
libc.so.1 => /lib/libc.so.1
libgcc_s.so.1 => /usr/local/gcc-4.4.3/lib/libgcc_s.so.1
libmp.so.2 => /lib/libmp.so.2
libmd5.so.1 => /lib/libmd5.so.1
libscf.so.1 => /lib/libscf.so.1
libdoor.so.1 => /lib/libdoor.so.1
libuutil.so.1 => /lib/libuutil.so.1
libm.so.2 => /lib/libm.so.2
/platform/SUNW,Sun-Blade-1000/lib/libc_psr.so.1
/platform/SUNW,Sun-Blade-1000/lib/libmd5_psr.so.1
}}}
certool runs too.
{{{
sage subshell$ ./certtool
Certtool help
Usage: certtool [options]
-s, --generate-self-signed
Generate a self-signed certificate.
-c, --generate-certificate
Generate a signed certificate.
--generate-proxy Generate a proxy certificate.
}}}
--
Ticket URL: <http://trac.sagemath.org/sage_trac/ticket/9201#comment:3>
Sage <http://www.sagemath.org>
Sage: Creating a Viable Open Source Alternative to Magma, Maple, Mathematica,
and MATLAB
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