#9808: Upgrade numpy to 1.5.0rc1 and scipy to 0.8
-------------------------------+--------------------------------------------
Reporter: maldun | Owner: maldun
Type: task | Status: needs_work
Priority: major | Milestone: sage-4.6
Component: packages | Keywords: numpy, scipy
Author: Stefan Reiterer | Upstream: N/A
Reviewer: | Merged:
Work_issues: |
-------------------------------+--------------------------------------------
Comment(by fbissey):
Looking at all that stuff in the spkg and comparing to Gentoo. Not very
pretty.
Do we really still need to use sage_fortran? On most platform we now use a
native
fortran compiler rather than a sage shipped one - I don't know if we still
do that
for OS X.
In the patch to gnu.py there is:
{{{
+ # Note that sse flags and so on lead to gfortran code that
segfaults, so disable arch flags
+ return opt
+
}}}
An extract of the Gentoo set up:
{{{
export NUMPY_FCONFIG="config_fc --noopt --noarch"
}}}
Actually here is the full set up that you might find interesting:
{{{
# See progress in http://projects.scipy.org/scipy/numpy/ticket/573
# with the subtle difference that we don't want to break Darwin
where
# -shared is not a valid linker argument
if [[ ${CHOST} != *-darwin* ]] ; then
append-ldflags -shared
fi
# only one fortran to link with:
# linking with cblas and lapack library will force
# autodetecting and linking to all available fortran compilers
use lapack || return
[[ -z ${FC} ]] && FC=$(tc-getFC)
# when fortran flags are set, pic is removed.
FFLAGS="${FFLAGS} -fPIC"
export NUMPY_FCONFIG="config_fc --noopt --noarch"
}}}
The other patches we have are relatively minor, a fix to the f2py man
page,
a patch for freebsd - that may be usefull, a patch for interix(!).
I cannot comment on the cygwin patches but they look very small.
We are are a bit more anal with site.cfg, I don't think it is useful in
the
context of sage - we just have more complex possible combinations of
blas/lapack.
The NUMPY_FCONFIG is passed to distutils as an argument of
{{{
python setup.py install
}}}
i.e. in the end what we do boils down to "python setup.py install
${NUMPY_FCONFIG}".
Can you point me to your solaris fix Dave?
I'd like to see if I can tidy all that up in something that requires less
patching
and is more based on FLAGS settings.
--
Ticket URL: <http://trac.sagemath.org/sage_trac/ticket/9808#comment:8>
Sage <http://www.sagemath.org>
Sage: Creating a Viable Open Source Alternative to Magma, Maple, Mathematica,
and MATLAB
--
You received this message because you are subscribed to the Google Groups
"sage-trac" group.
To post to this group, send email to [email protected].
To unsubscribe from this group, send email to
[email protected].
For more options, visit this group at
http://groups.google.com/group/sage-trac?hl=en.
