#9808: Upgrade numpy to 1.5.0 and scipy to 0.8
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Reporter: maldun
| Owner: maldun
Type: task
| Status: needs_work
Priority: major
| Milestone: sage-4.6
Component: packages
| Keywords: numpy, scipy
Author: Stefan Reiterer, Francois Bissey
| Upstream: N/A
Reviewer: Karl-Dieter Crisman, David Kirkby, Leif Leonhardy, Francois
Bissey | Merged:
Work_issues:
|
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Comment(by drkirkby):
Here's a recursive grep for {{{isfinite}}} in {{{/usr/include}}} on my
!OpenSolaris machine. I've not tested the package on my !OpenSolaris
machine, but given the results on Solaris 10, I doubt it would build.
{{{
drkir...@hawk:~$ ggrep -R isfinite /usr/include
/usr/include/python2.6/pyconfig.h:/* Define to 1 if you have the
declaration of `isfinite', and to 0 if you
/usr/include/python2.6/pymath.h:#define Py_IS_FINITE(X) isfinite(X)
ggrep: warning: /usr/include/gphoto2/gphoto2: recursive directory loop
/usr/include/iso/math_c99.h:#undef isfinite
/usr/include/iso/math_c99.h:#define isfinite(x) __extension__( \
/usr/include/iso/math_c99.h: { __typeof(x) __x_r = (x);
isfinite(__x_r) && \
/usr/include/iso/math_c99.h:#undef isfinite
/usr/include/iso/math_c99.h:#define isfinite(x)
__builtin_isfinite(x)
}}}
Note, there's no reference at all in {{{math.h}}} to {{{isfinite}}}. But
when the conditions are right, the contents of
{{{/usr/include/iso/math_c99.h}}} will get included, and so the macro
{{{isfinite}}} will be defined.
IMHO, the error message John got:
{{{
ImportError: ld.so.1: python: fatal: relocation error: file
/home/palmieri/fulvia/numpy/sage-4.6.alpha2/local/lib/python2.6/site-
packages/numpy/core/multiarray.so: symbol isfinite: referenced symbol not
found
}}}
is related to the fact that for whatever reason, the C99 headers are not
being included properly.
Unless this is compiled with {{{-std=c99}}}, I doubt this will work.
This contrasts to a Linux box (sage.math) where it looks to me that
{{{isfinite}}} will be defined whenever {{{math.h}}} is included. That is
just an error in my opinion, as {{{isfinite}}} was not defined until the
C99 standard. So Linux is wrong to define it, but some software is
assuming it's defined, and so fails when it is not.
IMHO, the bug is in unlikely to be LAPACK or ATLAS.
--
Ticket URL: <http://trac.sagemath.org/sage_trac/ticket/9808#comment:181>
Sage <http://www.sagemath.org>
Sage: Creating a Viable Open Source Alternative to Magma, Maple, Mathematica,
and MATLAB
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