I've looked all over, and I can't seem to find anywhere that documents what
the SGB field is in mpileup's VCF output (using samtools 0.2.0-rc6). The
header field ("Segregation based metric.") doesn't really shed much light
on it either. Is there a paper or some other source that details what this
value means and how it is calculated?

Thanks,
Brett Dutro

It is no coincidence that in no known language does the phrase 'As pretty
as an Airport' appear.
--Douglas Adams
------------------------------------------------------------------------------
HPCC Systems Open Source Big Data Platform from LexisNexis Risk Solutions
Find What Matters Most in Your Big Data with HPCC Systems
Open Source. Fast. Scalable. Simple. Ideal for Dirty Data.
Leverages Graph Analysis for Fast Processing & Easy Data Exploration
http://p.sf.net/sfu/hpccsystems
_______________________________________________
Samtools-help mailing list
Samtools-help@lists.sourceforge.net
https://lists.sourceforge.net/lists/listinfo/samtools-help

Reply via email to