Hi Brett,
I added math notes for SGB calculation here:
http://samtools.github.io/bcftools/
http://samtools.github.io/bcftools/rd-SegBias.pdf
Best,
Petr
On Mon, 2014-06-23 at 09:38 -0500, Brett Dutro wrote:
> I've looked all over, and I can't seem to find anywhere that documents
> what the SGB field is in mpileup's VCF output (using samtools
> 0.2.0-rc6). The header field ("Segregation based metric.") doesn't
> really shed much light on it either. Is there a paper or some other
> source that details what this value means and how it is calculated?
>
> Thanks,
> Brett Dutro
>
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