On 21 Feb 2015, at 01:43, Adam Birnbaum <a...@edicogenome.com> wrote: > I’ve been looking for information and documentation on CSI format, and found > only this one page on the record format and binning algorithms: > http://samtools.github.io/hts-specs/CSIv1.pdf.
That CSI document at http://samtools.github.io/hts-specs/ is indeed the spec. At the moment it's over-brief and needs to be read in conjunction with the description of BAI in the SAM spec. CSI embodies much the same idea as BAI, so much can be gleaned from the BAI description and the differences shown in the CSI record format. One of my back-burners has an update to the CSI spec to make it more complete and self-contained. I guess your question provides motivation to finish it up! John -- The Wellcome Trust Sanger Institute is operated by Genome Research Limited, a charity registered in England with number 1021457 and a company registered in England with number 2742969, whose registered office is 215 Euston Road, London, NW1 2BE. ------------------------------------------------------------------------------ Download BIRT iHub F-Type - The Free Enterprise-Grade BIRT Server from Actuate! Instantly Supercharge Your Business Reports and Dashboards with Interactivity, Sharing, Native Excel Exports, App Integration & more Get technology previously reserved for billion-dollar corporations, FREE http://pubads.g.doubleclick.net/gampad/clk?id=190641631&iu=/4140/ostg.clktrk _______________________________________________ Samtools-help mailing list Samtools-help@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/samtools-help
