Messages by Thread
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[Samtools-help] samtools view with -U option
Peter Chovanec
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[Samtools-help] Empty VCF file with bcftools call
Antoine Paccard
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[Samtools-help] when installing 1.31. on Centos (redhat) linux I get bam_tview_curses.c:46:5: error: unknown type name ‘WINDOW', no obvious reason
Dan Hyatt
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[Samtools-help] DV and IDV in samtools mpileup indel calling.
3110101...@zju.edu.cn
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[Samtools-help] number of mapped reads with flagstat
Tagliamonte,Massimiliano S
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[Samtools-help] Force VCF call over selected positions PLUS others
Alexander Predeus
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[Samtools-help] Samtools/BCFtools/HTSlib 1.3.1 released
John Marshall
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[Samtools-help] Bug in samtools version 1.3
Anne Philippi
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[Samtools-help] unsubscribe
Colin Hercus
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[Samtools-help] A problem of using Samtools to make VCF file
liuhe (Cathy Liu)
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[Samtools-help] samtools mpileup
kavita garg
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[Samtools-help] bwa samse: How to make randomness predictable?
Michael Nuhn
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[Samtools-help] bcftools som and variant calling for exome
Holly Zheng Bradley
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[Samtools-help] question about how to use Htslib to convert fastq to bam file
Luyi Tian
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[Samtools-help] A question about "mpileup"
Daniel Chau
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[Samtools-help] When would 1.3.1 be released?
Shinn Kondo
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[Samtools-help] tabix wrong version
Kaamesh Kamalaaharan
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[Samtools-help] Question of DP4 calculation for indels
Yitao Tang
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[Samtools-help] Gatk und samtools
Gladbach
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[Samtools-help] QUAL always 0
Adam Witney
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Re: [Samtools-help] Samtools fastq converts Bam to Fastq with wrong read order
Andrew Bjonnes
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[Samtools-help] Trying to fetch a read in a BAM file
Claudio Alberti
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[Samtools-help] samtools not stop
Michael Peng
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[Samtools-help] Commands and Options - VIEW
Robert May
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[Samtools-help] mpileup - [E..hts_open_format] error
Wybouw, Nicky
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[Samtools-help] Recommended guidelines for SNP detection in single-cells
Trevor Tanner
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[Samtools-help] Command DEPTH Options
Robert May
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[Samtools-help] Trying to fetch the mate in a BAM file
Claudio Alberti
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[Samtools-help] samtools sort output
carol white
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[Samtools-help] samtools PL
yuzh...@ablife.cc
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[Samtools-help] -N setting
Ryan Kevin (GUY'S AND ST THOMAS' NHS FOUNDATION TRUST)
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[Samtools-help] questions about options -m -f -B of command samtools view
Jing meng
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[Samtools-help] Samtools IDXSTATS
Margaret Linan MPH
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[Samtools-help] picard tools error
Giulia
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[Samtools-help] gzopen64 error
William Hsiao
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[Samtools-help] Mpileup with neighbouring indels
James Bonfield
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[Samtools-help] rmdup Segmentation Fault
Friedman, Ryan
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[Samtools-help] error building samtools 1.3
Stephane Plaisance
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[Samtools-help] Mpileup format
James Bonfield
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[Samtools-help] Picard MarkDuplicates error: Value was put into PairInfoMap more than once
Nitin Bhardwaj
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[Samtools-help] Ns in vcfutils.pl
Joanna Kelley
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[Samtools-help] samtools mpileup genotype likelihood calulation
Günter Jäger
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[Samtools-help] fastq/a samtools command error fault
Robert May
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[Samtools-help] HTSlib API to count BAM records related to one reference
Claudio Alberti
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[Samtools-help] Query on Samtools view downsample
shruti kane
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[Samtools-help] Updated Cygwin64 with 2.4.1.1
Robert May
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[Samtools-help] Samtools make no rule to make target kfunc stop
Robert May
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[Samtools-help] BCFTools make errors
Robert May
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[Samtools-help] SAMTOOLS make install error
Robert May
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[Samtools-help] samtools rmdup for variant calling with GATK
Svyatoslav Sidorov
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[Samtools-help] samtools fastq
carol white
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Re: [Samtools-help] Samtools makefile error
James Bonfield
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[Samtools-help] Meaning of TC aux tag
James Bonfield
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[Samtools-help] Indexed read retrieval with -L
Stephane Castel
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[Samtools-help] bcftools Error
Guertin, Michael J. (mjg7y)
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[Samtools-help] statistical method of samtools and bcftools
??????
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Re: [Samtools-help] bam2depth compile separately
Heng Li
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[Samtools-help] building error under OS X 10.10.5 with macport
Stephane Plaisance | VIB |
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[Samtools-help] Samtools/BCFtools/HTSlib 1.3 released
John Marshall
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[Samtools-help] samtools stats: definition of insert size average
Dieter Best
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[Samtools-help] best way to approximate the old school pileup
Richard Corbett
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[Samtools-help] BWA HLA
Fatima Naveed
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[Samtools-help] samtools index fails to open the BAM file
Yampolsky, Lev
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[Samtools-help] Seek and tell a BAM file
Claudio Alberti
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[Samtools-help] bcftools annotate
Tagliamonte,Massimiliano S
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[Samtools-help] I cam cross a problem in compiling the C script using the samtools api
hgong
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[Samtools-help] functionality to edit flag?
Ni Huang
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[Samtools-help] bcftools annotate segfaults with bed file
Alessandro Mammana
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[Samtools-help] Piping samtools output to picard
Yaseen Ladak
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[Samtools-help] Missing stdarg.h in cram.h when compiling samtools
Ivo Palli
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[Samtools-help] Uniquely mapping reads in mpileup
Wright, Alison
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[Samtools-help] I can't make Samtools from the Makefile
Xavier Olessa-Dragon
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[Samtools-help] samtools sort segmentation fault
Marie Kroeger
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[Samtools-help] bgzip from Java code?
Terry Casstevens
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[Samtools-help] Reading Custom Index - Creates many threads?
Terry Casstevens
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[Samtools-help] Cygwin installation of SamTools
Christopher Wozniak
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[Samtools-help] Installation problems on Windows
Christopher Wozniak
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[Samtools-help] pileup format ??
Norge Cruz Hernández
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[Samtools-help] bgzip performance?
Terry Casstevens
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[Samtools-help] samtools index commands pretends it has succeeded, but it has not
Michael Nuhn
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[Samtools-help] bcftools annotate could not parse header line
Tagliamonte,Massimiliano S