samtools-help

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2016/05/26 Re: [Samtools-help] segfault: bcftools stats Peter Johansson
2016/05/26 [Samtools-help] segfault: bcftools stats Peter Johansson
2016/05/22 [Samtools-help] merging BAMs without retaining sample information Yampolsky, Lev
2016/05/20 Re: [Samtools-help] Question relating to samtools mpileup output James Bonfield
2016/05/20 Re: [Samtools-help] About BAM->CRAM->BAM jkb
2016/05/19 [Samtools-help] Question relating to samtools mpileup output Ellis Hughes
2016/05/19 Re: [Samtools-help] samtools view -L Bayazit Yunusbayev
2016/05/19 Re: [Samtools-help] samtools view -L Devon Ryan
2016/05/19 Re: [Samtools-help] samtools view -L Bayazit Yunusbayev
2016/05/19 Re: [Samtools-help] samtools view -L Devon Ryan
2016/05/19 [Samtools-help] samtools view -L Bayazit Yunusbayev
2016/05/18 Re: [Samtools-help] About BAM->CRAM->BAM Lin, Chih-Hsu
2016/05/18 [Samtools-help] tabix giving error Arti Tandon
2016/05/18 Re: [Samtools-help] About BAM->CRAM->BAM James Bonfield
2016/05/17 [Samtools-help] About BAM->CRAM->BAM Lin, Chih-Hsu
2016/05/10 Re: [Samtools-help] Empty VCF file with bcftools call Antoine Paccard
2016/05/09 Re: [Samtools-help] samtools view with -U option Peter Chovanec
2016/05/09 Re: [Samtools-help] samtools view with -U option Peter Chovanec
2016/05/09 Re: [Samtools-help] samtools view with -U option John Marshall
2016/05/09 Re: [Samtools-help] samtools view with -U option Keiran Raine
2016/05/09 Re: [Samtools-help] Empty VCF file with bcftools call Petr Danecek
2016/05/08 [Samtools-help] samtools view with -U option Peter Chovanec
2016/05/05 Re: [Samtools-help] Empty VCF file with bcftools call Antoine Paccard
2016/05/05 Re: [Samtools-help] Empty VCF file with bcftools call Petr Danecek
2016/05/05 Re: [Samtools-help] Empty VCF file with bcftools call Petr Danecek
2016/05/05 Re: [Samtools-help] Empty VCF file with bcftools call Antoine Paccard
2016/05/05 Re: [Samtools-help] Empty VCF file with bcftools call Petr Danecek
2016/05/04 [Samtools-help] Empty VCF file with bcftools call Antoine Paccard
2016/05/03 Re: [Samtools-help] when installing 1.31. on Centos (redhat) linux I get bam_tview_curses.c:46:5: error: unknown type name ‘WINDOW', no obvious reason John Marshall
2016/05/03 [Samtools-help] when installing 1.31. on Centos (redhat) linux I get bam_tview_curses.c:46:5: error: unknown type name ‘WINDOW', no obvious reason Dan Hyatt
2016/04/29 [Samtools-help] DV and IDV in samtools mpileup indel calling. 3110101...@zju.edu.cn
2016/04/28 Re: [Samtools-help] number of mapped reads with flagstat Andrew Bjonnes
2016/04/28 Re: [Samtools-help] number of mapped reads with flagstat John Marshall
2016/04/28 Re: [Samtools-help] number of mapped reads with flagstat Tagliamonte,Massimiliano S
2016/04/28 Re: [Samtools-help] number of mapped reads with flagstat Tagliamonte,Massimiliano S
2016/04/28 Re: [Samtools-help] number of mapped reads with flagstat James Bonfield
2016/04/27 [Samtools-help] number of mapped reads with flagstat Tagliamonte,Massimiliano S
2016/04/25 [Samtools-help] Force VCF call over selected positions PLUS others Alexander Predeus
2016/04/22 [Samtools-help] Samtools/BCFtools/HTSlib 1.3.1 released John Marshall
2016/04/20 Re: [Samtools-help] Bug in samtools version 1.3 John Marshall
2016/04/20 Re: [Samtools-help] Bug in samtools version 1.3 Thomas W. Blackwell
2016/04/20 [Samtools-help] Bug in samtools version 1.3 Anne Philippi
2016/04/18 Re: [Samtools-help] bwa samse: How to make randomness predictable? Michael Nuhn
2016/04/17 [Samtools-help] unsubscribe Colin Hercus
2016/04/17 [Samtools-help] A problem of using Samtools to make VCF file liuhe （Cathy Liu）
2016/04/14 [Samtools-help] samtools mpileup kavita garg
2016/04/14 [Samtools-help] bwa samse: How to make randomness predictable? Michael Nuhn
2016/04/12 [Samtools-help] bcftools som and variant calling for exome Holly Zheng Bradley
2016/04/11 [Samtools-help] question about how to use Htslib to convert fastq to bam file Luyi Tian
2016/04/06 Re: [Samtools-help] A question about "mpileup" Daniel Chau
2016/04/06 Re: [Samtools-help] A question about "mpileup" Colin Hercus
2016/04/06 Re: [Samtools-help] A question about "mpileup" David Jones
2016/04/06 [Samtools-help] A question about "mpileup" Daniel Chau
2016/04/05 Re: [Samtools-help] When would 1.3.1 be released? John Marshall
2016/04/04 [Samtools-help] When would 1.3.1 be released? Shinn Kondo
2016/04/04 Re: [Samtools-help] tabix wrong version John Marshall
2016/04/04 [Samtools-help] tabix wrong version Kaamesh Kamalaaharan
2016/03/31 [Samtools-help] Question of DP4 calculation for indels Yitao Tang
2016/03/25 Re: [Samtools-help] QUAL always 0 Petr Danecek
2016/03/24 Re: [Samtools-help] Gatk und samtools James Bonfield
2016/03/24 [Samtools-help] Gatk und samtools Gladbach
2016/03/22 [Samtools-help] QUAL always 0 Adam Witney
2016/03/21 Re: [Samtools-help] samtools not stop James Bonfield
2016/03/20 Re: [Samtools-help] Samtools fastq converts Bam to Fastq with wrong read order Kar Tong Tan
2016/03/20 Re: [Samtools-help] Samtools fastq converts Bam to Fastq with wrong read order Andrew Bjonnes
2016/03/20 [Samtools-help] Trying to fetch a read in a BAM file Claudio Alberti
2016/03/20 Re: [Samtools-help] Commands and Options - VIEW Sven Klages
2016/03/19 [Samtools-help] samtools not stop Michael Peng
2016/03/19 [Samtools-help] Commands and Options - VIEW Robert May
2016/03/19 [Samtools-help] mpileup - [E..hts_open_format] error Wybouw, Nicky
2016/03/19 Re: [Samtools-help] mpileup - [E..hts_open_format] error John Marshall
2016/03/19 [Samtools-help] Recommended guidelines for SNP detection in single-cells Trevor Tanner
2016/03/19 [Samtools-help] Command DEPTH Options Robert May
2016/03/18 [Samtools-help] Trying to fetch the mate in a BAM file Claudio Alberti
2016/03/18 Re: [Samtools-help] Trying to fetch a read in a BAM file Peter Johansson
2016/03/18 Re: [Samtools-help] Trying to fetch a read in a BAM file Claudio Alberti
2016/03/18 Re: [Samtools-help] Command DEPTH Options Peter Cock
2016/03/09 Re: [Samtools-help] samtools sort output Tommy Carstensen
2016/03/09 [Samtools-help] samtools sort output carol white
2016/03/09 Re: [Samtools-help] samtools PL Tommy Carstensen
2016/03/09 [Samtools-help] samtools PL yuzh...@ablife.cc
2016/03/04 Re: [Samtools-help] questions about options -m -f -B of command samtools view Jing meng
2016/03/04 Re: [Samtools-help] -N setting John Marshall
2016/03/04 [Samtools-help] -N setting Ryan Kevin (GUY'S AND ST THOMAS' NHS FOUNDATION TRUST)
2016/03/04 Re: [Samtools-help] questions about options -m -f -B of command samtools view James Bonfield
2016/03/03 Re: [Samtools-help] questions about options -m -f -B of command samtools view Andrew Bjonnes
2016/03/02 [Samtools-help] questions about options -m -f -B of command samtools view Jing meng
2016/02/29 Re: [Samtools-help] Samtools IDXSTATS Peter Cock
2016/02/28 [Samtools-help] Samtools IDXSTATS Margaret Linan MPH
2016/02/25 Re: [Samtools-help] picard tools error Giulia
2016/02/25 Re: [Samtools-help] picard tools error Andrew Bjonnes
2016/02/25 Re: [Samtools-help] picard tools error Dario Beraldi
2016/02/25 Re: [Samtools-help] picard tools error Giulia
2016/02/25 Re: [Samtools-help] picard tools error Dario Beraldi
2016/02/25 [Samtools-help] picard tools error Giulia
2016/02/24 Re: [Samtools-help] gzopen64 error John Marshall
2016/02/23 Re: [Samtools-help] gzopen64 error William Hsiao
2016/02/22 Re: [Samtools-help] gzopen64 error John Marshall
2016/02/22 Re: [Samtools-help] gzopen64 error William Hsiao
2016/02/22 Re: [Samtools-help] gzopen64 error John Marshall
2016/02/21 [Samtools-help] gzopen64 error William Hsiao
2016/02/17 Re: [Samtools-help] rmdup Segmentation Fault James Bonfield
2016/02/17 Re: [Samtools-help] Mpileup with neighbouring indels Hideo Imamura
2016/02/17 [Samtools-help] Mpileup with neighbouring indels James Bonfield
2016/02/17 Re: [Samtools-help] rmdup Segmentation Fault John Marshall
2016/02/17 Re: [Samtools-help] rmdup Segmentation Fault Devon Ryan
2016/02/17 [Samtools-help] rmdup Segmentation Fault Friedman, Ryan
2016/02/16 Re: [Samtools-help] error building htslib 1.3 on mac OS X (macports) John Marshall
2016/02/16 [Samtools-help] error building htslib 1.3 on mac OS X (macports) Stephane Plaisance
2016/02/16 Re: [Samtools-help] error building samtools 1.3 John Marshall
2016/02/16 [Samtools-help] error building samtools 1.3 Stephane Plaisance
2016/02/15 [Samtools-help] Mpileup format James Bonfield
2016/02/13 Re: [Samtools-help] Picard MarkDuplicates error: Value was put into PairInfoMap more than once Keiran Raine
2016/02/12 Re: [Samtools-help] Picard MarkDuplicates error: Value was put into PairInfoMap more than once Richard Corbett
2016/02/12 [Samtools-help] Picard MarkDuplicates error: Value was put into PairInfoMap more than once Nitin Bhardwaj
2016/02/04 [Samtools-help] Ns in vcfutils.pl Joanna Kelley
2016/02/03 Re: [Samtools-help] samtools mpileup genotype likelihood calulation Petr Danecek
2016/02/03 Re: [Samtools-help] samtools mpileup genotype likelihood calulation Petr Danecek
2016/02/01 Re: [Samtools-help] samtools mpileup genotype likelihood calulation Thomas W. Blackwell
2016/02/01 [Samtools-help] samtools mpileup genotype likelihood calulation Günter Jäger
2016/02/01 Re: [Samtools-help] fastq/a samtools command error fault Sendu Bala
2016/02/01 [Samtools-help] fastq/a samtools command error fault Robert May
2016/01/27 Re: [Samtools-help] HTSlib API to count BAM records related to one reference Claudio Alberti
2016/01/27 Re: [Samtools-help] HTSlib API to count BAM records related to one reference John Marshall
2016/01/27 Re: [Samtools-help] HTSlib API to count BAM records related to one reference Claudio Alberti
2016/01/27 Re: [Samtools-help] HTSlib API to count BAM records related to one reference Thomas W. Blackwell
2016/01/27 [Samtools-help] HTSlib API to count BAM records related to one reference Claudio Alberti
2016/01/24 [Samtools-help] Query on Samtools view downsample shruti kane
2016/01/24 [Samtools-help] Updated Cygwin64 with 2.4.1.1 Robert May
2016/01/22 [Samtools-help] Samtools make no rule to make target kfunc stop Robert May
2016/01/16 [Samtools-help] BCFTools make errors Robert May
2016/01/16 [Samtools-help] SAMTOOLS make install error Robert May
2016/01/15 Re: [Samtools-help] samtools fastq Peter Cock
2016/01/15 Re: [Samtools-help] Samtools makefile error James Bonfield
2016/01/15 Re: [Samtools-help] Samtools makefile error James Bonfield
2016/01/14 Re: [Samtools-help] Samtools makefile error Robert May
2016/01/14 Re: [Samtools-help] samtools fastq Bob Harris
2016/01/14 [Samtools-help] samtools rmdup for variant calling with GATK Svyatoslav Sidorov
2016/01/14 [Samtools-help] samtools fastq carol white
2016/01/14 Re: [Samtools-help] Samtools makefile error James Bonfield
2016/01/12 [Samtools-help] Meaning of TC aux tag James Bonfield
2016/01/08 Re: [Samtools-help] bcftools Error Petr Danecek
2015/12/31 Re: [Samtools-help] Windows10 cygwin64 and samtools problem installing Robert May
2015/12/31 Re: [Samtools-help] Windows10 cygwin64 and samtools problem installing John Marshall
2015/12/30 [Samtools-help] Windows10 cygwin64 and samtools problem installing Robert May
2015/12/30 [Samtools-help] Indexed read retrieval with -L Stephane Castel
2015/12/30 [Samtools-help] 答复: bam2depth compile separately Zengquan He
2015/12/30 [Samtools-help] bcftools Error Guertin, Michael J. (mjg7y)
2015/12/23 [Samtools-help] statistical method of samtools and bcftools ??????
2015/12/21 Re: [Samtools-help] bam2depth compile separately Heng Li
2015/12/21 Re: [Samtools-help] Samtools/BCFtools/HTSlib 1.3 released Liu Xingliang
2015/12/16 Re: [Samtools-help] building error under OS X 10.10.5 with macport John Marshall
2015/12/16 [Samtools-help] building error under OS X 10.10.5 with macport Stephane Plaisance | VIB |
2015/12/15 [Samtools-help] Samtools/BCFtools/HTSlib 1.3 released John Marshall
2015/12/11 Re: [Samtools-help] best way to approximate the old school pileup Richard Corbett
2015/12/11 Re: [Samtools-help] best way to approximate the old school pileup James Bonfield
2015/12/10 [Samtools-help] samtools stats: definition of insert size average Dieter Best
2015/12/10 [Samtools-help] best way to approximate the old school pileup Richard Corbett
2015/12/08 [Samtools-help] BWA HLA Fatima Naveed
2015/12/08 Re: [Samtools-help] Seek and tell a BAM file John Marshall
2015/12/08 Re: [Samtools-help] Seek and tell a BAM file Claudio Alberti
2015/12/08 Re: [Samtools-help] Seek and tell a BAM file Chad S Harland
2015/12/08 Re: [Samtools-help] Seek and tell a BAM file John Marshall
2015/12/08 Re: [Samtools-help] Seek and tell a BAM file James Bonfield
2015/12/08 Re: [Samtools-help] Seek and tell a BAM file Claudio Alberti
2015/12/07 Re: [Samtools-help] Seek and tell a BAM file Claudio Alberti
2015/12/07 Re: [Samtools-help] Seek and tell a BAM file James Bonfield
2015/12/07 Re: [Samtools-help] Seek and tell a BAM file Claudio Alberti
2015/12/07 Re: [Samtools-help] Seek and tell a BAM file James Bonfield
2015/12/07 Re: [Samtools-help] Seek and tell a BAM file Claudio Alberti
2015/12/04 Re: [Samtools-help] samtools index fails to open the BAM file Douglas Senalik
2015/12/04 [Samtools-help] samtools index fails to open the BAM file Yampolsky, Lev
2015/12/04 [Samtools-help] Seek and tell a BAM file Claudio Alberti
2015/12/01 [Samtools-help] bcftools annotate Tagliamonte,Massimiliano S
2015/12/01 Re: [Samtools-help] I cam cross a problem in compiling the C script using the samtools api John Marshall
2015/12/01 [Samtools-help] I cam cross a problem in compiling the C script using the samtools api hgong
2015/11/30 Re: [Samtools-help] Uniquely mapping reads in mpileup James Bonfield
2015/11/30 Re: [Samtools-help] Uniquely mapping reads in mpileup Wright, Alison
2015/11/30 Re: [Samtools-help] Uniquely mapping reads in mpileup Petr Danecek
2015/11/27 [Samtools-help] functionality to edit flag? Ni Huang
2015/11/24 Re: [Samtools-help] Piping samtools output to picard Yaseen Ladak
2015/11/24 Re: [Samtools-help] Piping samtools output to picard Devon Ryan
2015/11/24 Re: [Samtools-help] Piping samtools output to picard Yaseen Ladak
2015/11/24 Re: [Samtools-help] Piping samtools output to picard Devon Ryan
2015/11/23 Re: [Samtools-help] bcftools annotate segfaults with bed file Petr Danecek
2015/11/23 [Samtools-help] bcftools annotate segfaults with bed file Alessandro Mammana
2015/11/20 [Samtools-help] Piping samtools output to picard Yaseen Ladak
2015/11/20 Re: [Samtools-help] Uniquely mapping reads in mpileup Wright, Alison
2015/11/20 Re: [Samtools-help] Uniquely mapping reads in mpileup Petr Danecek
2015/11/19 Re: [Samtools-help] Missing stdarg.h in cram.h when compiling samtools John Marshall
2015/11/19 [Samtools-help] Missing stdarg.h in cram.h when compiling samtools Ivo Palli
2015/11/18 [Samtools-help] Uniquely mapping reads in mpileup Wright, Alison
2015/11/16 Re: [Samtools-help] I can't make Samtools from the Makefile Christian Cole (Staff)
2015/11/16 Re: [Samtools-help] I can't make Samtools from the Makefile Thomas W. Blackwell
2015/11/14 [Samtools-help] I can't make Samtools from the Makefile Xavier Olessa-Dragon
2015/11/13 [Samtools-help] samtools sort segmentation fault Marie Kroeger
2015/11/13 Re: [Samtools-help] [Samtools-devel] bgzip from Java code? Nils Homer
2015/11/13 [Samtools-help] bgzip from Java code? Terry Casstevens
2015/11/13 [Samtools-help] Reading Custom Index - Creates many threads? Terry Casstevens
2015/11/12 [Samtools-help] Cygwin installation of SamTools Christopher Wozniak