On 17 Dec 2018, at 19:08, Rob Thompson <[email protected]> wrote:
> I have compiled bcftools with all the required -lcurl -lcrypto -lssl libs.
>
> I can read from a public S3 file fine, but as soon as its make private I just
> get:
> Failed to open FILE.vcf.gz: Permission denied
>
> AWS credentials are set in ~/.aws/credentials. I have tried exporting them,
> pre-signed urls, with https instead of s3:// but nothing seems to work.
Assuming you have compiled HTSlib as well, try
htsfile -vvvvvv s3://FILE.vcf.gz
Cranking up the verbosity this high turns on libcurl's logging of the HTTP
headers etc sent and received, which will provide some clues.
John
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