I never used PT or Track so I can't say anything. Unfortunately I have to use Hansoft (mentioned by Matt) right now. My suggestion is do not even try it. It's not worth it. The only one tool I really liked and I used when was working at the startup with three teams (read 3 related projects). Each team was 3-10 people and about 5 people of QA & Management who were responsible for testing and acceptance of the features implemented by developers. That tool is AgileZen. Somebody told me though that the Jira's Greenhopper is much more better and follow Kandan workflow more close. I played with it, but that did not change my opinion. Jira is for huge companies. If you are a small organization go ahead and use AgileZen.
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