[caret-users] blacking out subcortical regions

2014-11-09 Thread Frédéric Roux
Hi there, I've finally managed to get to visualize my MEG source-reconstruction data using caret !!! So far I am very satisfied with the way everything looks. The only thing that's missing is a way to black out the sub-cortical areas? I've seen people do this regularly in their publications and

Re: [caret-users] blacking out subcortical regions

2014-11-10 Thread Frédéric Roux
thanks Donna! Frédéric Roux - Original Message - From: "Donna Dierker" To: "SureFit Caret, and SuMS software users" Sent: Monday, November 10, 2014 4:52:53 PM Subject: Re: [caret-users] blacking out subcortical regions There is a paint file that comes with

[caret-users] problem with mapping volume to surface

2015-01-28 Thread Frédéric Roux
Dear all, a while ago I managed to map my functional data with caret onto the PALS-B12 template. Unfortunately, I cannot reproduce this anymore so I am hoping that somebody may be able to guide me to figure out what goes wrong. The steps that I take are: 1) Attributes -> Map volume(s) to surfac

[caret-users] negative values displayed positive

2015-06-21 Thread Frédéric Roux
Dear all, I'm trying to map a functional volume to the PLAS-B12 surface but the sign of the values gets flipped so that negative values appear as positive ones. Does anyone know what could be wrong? Many thanks. Fred -- FR - Original Message - From: "Matt Glasser" To: "SureFit Caret,

Re: [caret-users] negative values displayed positive

2015-06-21 Thread Frédéric Roux
ake sure it's not the palette that is making your values appear to be flipped: http://brainvis.wustl.edu/CaretHelpAccount/caret5_help/file_formats/file_formats.html#paletteFile Caret has some built-in palettes (see D/C: Metric Settings menu). On Jun 21, 2015, at 3:55 AM, Frédéric Roux wro

Re: [caret-users] negative values displayed positive

2015-06-23 Thread Frédéric Roux
21, 2015, at 4:55 PM, Frédéric Roux wrote: > Hi Dona, > > thanks for getting back on this. > I am using NIFTI, so nothing rare from that side. > > Just uploaded the file via the link you sent me. > > Thanks for looking into this. > > -- > FR > > - Ori