Re: [galaxy-dev] Hovering over a history dataset lights up the other datasets....?

2014-12-02 Thread Carl Eberhard
Hi, Hans Sorry: This hasn't been added yet. This was mistakenly added as complete and in the release by me. I've update the news brief to reflect that. Apologies for the trouble. Carl On Tue, Dec 2, 2014 at 11:46 AM, Hans-Rudolf Hotz wrote: > Hi all > > > and just as a follow up to my previ

Re: [galaxy-dev] small issue with the black frame around displayed history item

2014-12-02 Thread Carl Eberhard
Hi, Hans. Sorry for the confusion on this. I've got a card to improve that feature here: https://trello.com/c/xWdgs01z I may remove it for visualizations as they're too variable in where/how they display. Thanks for the info. Carl On Tue, Dec 2, 2014 at 11:41 AM, Hans-Rudolf Hotz wrote: > Hi

Re: [galaxy-dev] galaxy with torque

2014-12-02 Thread Fernandez Edgar
Thank you for that correction. Just a small FYI (maybe it will be useful to update the wiki)… I had to export three variables to make the scramble possible: export PBS_PYTHON_INCLUDEDIR=/usr/local/torque/include/ export PBSCONFIG=/usr/local/torque/bin/pbs-config export LIBTORQUE_DIR=/usr/local/t

Re: [galaxy-dev] galaxy with torque

2014-12-02 Thread Rémy Dernat
Sorry for answer 7. There is no benefit to do that. Once the egg is done, there is nothing to do from here, except if you change your python version... If that variable is empty, that is normal, because it is not an environment variable, it is just used by the following python command: LIBTORQUE_DI

[galaxy-dev] Hovering over a history dataset lights up the other datasets....?

2014-12-02 Thread Hans-Rudolf Hotz
Hi all and just as a follow up to my previous mail: If I continue reading the NewsBrief, it says: "Hovering over a history dataset lights up the other datasets from which it was derived." This doesn't wotk for me. I also tried it on 'main' without success. Is there a special trick I need t

[galaxy-dev] small issue with the black frame around displayed history item

2014-12-02 Thread Hans-Rudolf Hotz
Hi all I am in the process of updating our galaxy servers (from "latest_2014.08.11" to "latest_2014.10.06"). As announced in the NewsBriefs (https://wiki.galaxyproject.org/DevNewsBriefs/2014_10_06), "the current/active dataset (the dataset being shown/manipulated in the center panel of 'ana

[galaxy-dev] Page generated by a Galaxy behind HTTPS(Nginx) makes HTTP calls

2014-12-02 Thread Maxime Lévesque
I have followed the instructions here : https://wiki.galaxyproject.org/Admin/Config/nginxProxy to run a Galaxy behind an NGinx proxy under with HTTPS, The relevant part of my NGinx config has : proxy_set_header REMOTE_USER "$loginOnHost"; proxy_set_header X-Forwarded-Ho

Re: [galaxy-dev] galaxy with torque

2014-12-02 Thread Rémy Dernat
Hi Edgar, You are right. It is very annoying... So, to answer your questions: 1/ First answer of google / wikipedia with DRMAA : http://en.wikipedia.org/wiki/DRMAA It is a pattern to talk with any DRM system (SGE, torque, whatever...) 2/ This is a library (python version) for your Torque install

Re: [galaxy-dev] galaxy with torque

2014-12-02 Thread Fernandez Edgar
Hi everyone, I’m guessing Remy, you click on the send button by mistake on your HTC device. It happens to me ALL the time… I wanted to take this opportunity to add some questions to the three questions in my previous email. So here goes: 4. Is it necessary that my torque compute nodes ha

Re: [galaxy-dev] galaxy with torque

2014-12-02 Thread remy...@gmail.com
1 a drmaa d Envoyé depuis mon HTC - Reply message - De : "Fernandez Edgar" Pour : "John Chilton" Cc : "galaxy-...@bx.psu.edu" Objet : [galaxy-dev] galaxy with torque Date : mer., nov. 26, 2014 19:09 Hi John, First, thank you very much for your prompt answer. It's extremely appreciat