Re: [Jmol-users] color by model

2005-07-07 Thread Miguel
> As you can see, addressing model2 is possible, but I don´t see Model2 in > the > viewer. > > Can anyone confirm that effect? > > Pascal to display all models you must say model all Then you can select and color them individually. Miguel ---

Re: [Jmol-users] beginning Jmol website

2005-07-07 Thread Miguel
> I see the file there from my ftp program, so I'm confused. My > page is at http://web.centre.edu/muzyka/organic/butane/simple.htm butane.xyz does not exist in the same directory as simple.htm Restated, this file should exist, but does not: http://web.centre.edu/muzyka/organic/butane/butane.xy

Re: [Jmol-users] beginning Jmol website

2005-07-07 Thread Angel Herraez
Hi Jennifer I have seen this before. Most likely it is due to jmol applet being in a directory **under** that of the model. This is a known problem, though I thought I understood it was so only for local files, no web server files. Anyway, for a start try putting jmolapplet.jar in the same fol

[Jmol-users] beginning Jmol website

2005-07-07 Thread Jennifer L. Muzyka
I'm finally trying to start converting some of my chime tutorials to jmol, and I'm having a tough time getting a very simple example to work. I basically copied the "simple example" in the demonstration pages. I've tried several approaches, all of them unsuccessful. I tried running the page f

Re: [Jmol-users] color by model

2005-07-07 Thread Jan Reichert
Pascal Benkert wrote: The select-command for models works but the second model is never displayed. Here the commands: select all cartoon select model=1 color blue select model=2 color red As you can see, addressing model2 is possible, but I don´t see Model2 in the viewer. Can anyone conf

Re: [Jmol-users] color by model

2005-07-07 Thread Pascal Benkert
The select-command for models works but the second model is never displayed. Here the commands: select all 6152 atoms selected Script completed Jmol script completed cartoon Script completed Jmol script completed select model=1 2433 atoms selected Script completed Jmol script completed color bl

Re: [Jmol-users] color by model

2005-07-07 Thread timothy driscoll
On 2005-07-07 (09:45) Pascal Benkert wrote: >hi all, > >In Protein3Dfit (http://biotool.uni-koeln.de/3dalign_neu/), I use >Jmol to=20 provide a quick view on the result of the protein >structure superposition.= =20 The results are stored in a PDB-file >with the two proteins separated by the= =20 M

[Jmol-users] color by model

2005-07-07 Thread Pascal Benkert
hi all, In Protein3Dfit (http://biotool.uni-koeln.de/3dalign_neu/), I use Jmol to provide a quick view on the result of the protein structure superposition. The results are stored in a PDB-file with the two proteins separated by the MODEL/ENDMDL statement. Now I want to color to two models. "Co