Hi,
The example on ?mpi.close.Rslaves seems to 'hang' for me:
library(Rmpi)
mpi.spawn.Rslaves(nslaves=2)
tailslave.log()
mpi.remote.exec(rnorm(10))
mpi.close.Rslaves() # => hangs
... with output (hanging at the last line, not returning to the prompt):
> library(Rmpi)
> mpi.spawn.Rslaves(nslaves
... worked flawlessly with rJava 0.9-8 from
https://www.rforge.net/rJava/files/ -- thanks a ton, Simon!
Cheers,
Marius
On Tue, Nov 3, 2015 at 4:57 PM, Simon Urbanek
wrote:
> Please make sure you are using rJava 0.9-8 since your JVM is lacking the path
> in libjvm and you are on 10.11 which has
Hi,
I run R (devel and 3.2.2) under Mac OS X 10.11.1. I installed the JDK
via jdk-8u66-macosx-x64.dmg ("java -version" works in the terminal).
When I do install.packages("rJava"), I receive:
...
checking whether JNI programs can be compiled... yes
checking JNI data types... configure: error: One
gure scripts
> 4. in src, rename Makevars.in Makevars
> 5. edit Makevars, replace @GSL_CFLAGS@ with the output of 'gsl-config
> —cflags’ and replace @GSL_LIBS@ with the output of ‘gsl-config —libs'
> 6. R CMD INSTALL the gsl directory
>
> Hope that works,
> Kjell
>
&
t either way, Simon has more recent versions on his web
> pages, the src at:
>
> http://r.research.att.com/src/
>
> and the libs at:
>
> http://r.research.att.com/libs/
>
>
> HTH,
>
> -Roy
>> On Oct 21, 2015, at 4:12 PM, Marius Hofert
>> wrote:
>>
On Wed, Oct 21, 2015 at 7:02 PM, Marius Hofert wrote:
> What fails? I did the exact same thing an another MacBook Pro a couple
> of months ago and it worked there (also under OS X 10.11)... this is
> strange.
>
I just tried to install "gsl" on the other machine again... and
Hi,
I installed gsl (gsl-1.16.tar.gz) via ./configure, make, make check
and sudo make install. gsl-config --version shows:
$ gsl-config --version
1.16
I then wanted to install the R package "gsl" from source:
> install.packages("gsl", type="source")
Installing package into '/usr/local/R/library
Dear Professor Ripley,
Thanks for helping.
- Yes, cairo.so did not exist
- Okay, following the 'first approach', I have to install XQuartz
before R and set "export
PKG_CONFIG_PATH=/opt/X11/lib/pkgconfig:/usr/local/lib/pkgconfig:/usr/lib/pkgconfig".
Is the latter what you mean by "point to it"? I'
Hi,
I get ...
> svg(filename=(file <- "foo.svg"))
Warning messages:
1: In svg(filename = (file <- "foo.svg")) :
unable to load shared object
'/usr/local/R/R-3.2.2_build/library/grDevices/libs//cairo.so':
dlopen(/usr/local/R/R-3.2.2_build/library/grDevices/libs//cairo.so,
6): image not found
2
Hi David,
... good point, that solved it!
Thanks & cheers,
Marius
On Wed, Oct 7, 2015 at 7:19 PM, David Winsemius wrote:
>
> On Oct 7, 2015, at 8:20 AM, Marius Hofert wrote:
>
>> Hi Duncan,
>>
>> thanks, here is the info:
>> - "alias R" shows alia
Hi Duncan,
thanks, here is the info:
- "alias R" shows alias R='/usr/local/bin/R --no-restore-history --no-save'
- I start R in batch mode via "R CMD batch..."
Batch mode must be the problem then. If I start R via "R", everything
works as expected... So how can I teach R in batch mode to respect t
Hi,
I would like to start R by default with '--no-restore-history
--no-save' to avoid that .RData files are written. I put "alias R=R
--no-restore-history --no-save" in virtually all relevant system/dot
files, like ~/.bash_profile and ~/.profile (even ~/.bashrc), but
still, .RData files are writte
Hi Simon,
... works *perfectly*, thanks a lot.
Cheers,
Marius
On Fri, May 15, 2015 at 10:28 AM, Simon Urbanek
wrote:
>
>> On May 14, 2015, at 9:32 PM, Marius Hofert
>> wrote:
>>
>> Hi,
>>
>> I'm working under Mac OS X 10.10.3 and installed R fr
Hi,
I'm working under Mac OS X 10.10.3 and installed R from source (see
below for more information). Hen compiling a package I receive a
warning about UTF-8 not being available:
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for synt
nsen"
> wrote:
>>
>> yeah, I forgot.
>>
>> Do what Kevin says, grab the texinfo from the r.research.att.com/libs
>> website. Basically this is the first place to look.
>>
>> Kasper
>>
>> On Sun, May 10, 2015 at 9:49 PM, Marius Hofert
>
.
>>
>> For texi2any I would install a new version of MacTex.
>>
>> Finally, see the R-admin manual.
>>
>> Best,
>> Kasper
>>
>> On Sun, May 10, 2015 at 8:38 PM, Marius Hofert
>> wrote:
>>>
>>> Hi Kevin,
>>>
>>>
>>
>> http://cran.r-project.org/doc/manuals/r-release/R-admin.html
>>
>> People are not inclined to write significant amounts of the same information
>> to the list...
>>
>> -Peter D
>>
>>
>>> On 10 May 2015, at 19:27 , Marius Hofert w
o thanks for the hint towards r.research... I'll look into that
once everything else is running. I already have some things running,
e.g., texinfo, not sure if the 'texinfo' you mentioned is a specific
one (but I'll see then).
On Sun, May 10, 2015 at 1:04 PM, peter dalgaard wro
Hi,
I'm running Mac OS X Yosemite 10.10.3 on a MacBook Pro (Retina,
13", 2015). I would like to install R from source (various
versions etc.) and thus installed Xcode (latest version:
6.3.1). How can I get a Fortran compiler which is compatible with Xcode 6.3.1?
Here is what I tried:
1) I used to
Okay, solved. I had to create a symbolic link from ~/R-dev/digest to
/Library/Frameworks/R.framework/library so that it was found.
Cheers,
Marius
On 2012-04-22, at 20:01 , Marius Hofert wrote:
> Dear Mac expeRts,
>
> I'm working with R-2.15.0 on Mac OS X 10.7.3. I need
Dear Mac expeRts,
I'm working with R-2.15.0 on Mac OS X 10.7.3. I need to install the development
version of ggplot2. This can be done as follows (note that actually some more
things are required, see https://gist.github.com/1150934, but that doesn't play
a role here):
,
| require(devtools)
Duncan Murdoch writes:
> On 12-04-15 3:34 AM, Marius Hofert wrote:
>> Hi,
>>
>> I couldn't find the vignette for the package 'parallel' (Mac OS X 10.7.3; R
>> 2.15.0). I then tried to (re)install the package (I know I comes with R
>> natively).
Hi,
I couldn't find the vignette for the package 'parallel' (Mac OS X 10.7.3; R
2.15.0). I then tried to (re)install the package (I know I comes with R
natively). I obtained:
,
| > require(parallel)
| Loading required package: parallel
| > vignette(package="parallel")
| no vignettes found
| >
Dear Hans-Jörg,
many thanks for helping, that perfectly solved it!
Cheers,
Marius
On 2012-02-28, at 15:18 , Hans-Jörg Bibiko wrote:
> Hmm,
>
> if I set:
>
> options(browser="/usr/bin/open -a 'Google Chrome'")
>
> then
>
> help.start()
>
> launches Chrome and shows the R Help
Dear Didier,
This line you addressed shows: "Default web browser: Google Chrome.app
(17.0.963)"
How does this help?
If I adjust ~/.Rprofile accordingly (using exactly "Google Chrome.app
(17.0.963)"), I get:
> help.start()
starting httpd help server ... done
If the browser launched by 'Google Ch
Dear Mac-expeRts,
I work with R version 2.14.0 (2011-10-31) (Platform:
x86_64-apple-darwin11.2.0/x86_64 (64-bit)) and recently realized that
help.start() does not work as expected. I soon found out that
options(browser="chrome") in my ~/.Rprofile is not valid, "sh" does not find the
command "chrom
*Brilliant*, works!
Thank you very much for your (patience and) help, Simon!
Cheers,
Marius
On 2011-10-12, at 15:36 , Simon Urbanek wrote:
>
> On Oct 12, 2011, at 9:17 AM, Marius Hofert wrote:
>
>> Dear Simon,
>>
>> thanks a lot for helping. Here is what I c
;
oldincludedir='/usr/include'
pdfdir='${docdir}'
prefix='/usr/local'
program_transform_name='s,x,x,'
psdir='${docdir}'
sbindir='${exec_prefix}/sbin'
sharedstatedir='${prefix}/com'
sysconfdir='${prefix}/etc'
target_alias=&#x
On 2011-10-12, at 00:37 , Simon Urbanek wrote:
>
> On Oct 11, 2011, at 6:33 PM, Marius Hofert wrote:
>
>>
>> On 2011-10-12, at 00:12 , Simon Urbanek wrote:
>>
>>>
>>> On Oct 11, 2011, at 6:01 PM, Marius Hofert wrote:
>>>
&g
On 2011-10-12, at 00:12 , Simon Urbanek wrote:
>
> On Oct 11, 2011, at 6:01 PM, Marius Hofert wrote:
>
>>
>> On 2011-10-11, at 23:30 , Simon Urbanek wrote:
>>
>>>
>>> On Oct 11, 2011, at 5:16 PM, Marius Hofert wrote:
>>>
&g
On 2011-10-11, at 23:30 , Simon Urbanek wrote:
>
> On Oct 11, 2011, at 5:16 PM, Marius Hofert wrote:
>
>>
>> On 2011-10-11, at 23:04 , Simon Urbanek wrote:
>>
>>>
>>> On Oct 11, 2011, at 4:10 PM, Marius Hofert wrote:
>>>
>>>&g
On 2011-10-11, at 23:04 , Simon Urbanek wrote:
>
> On Oct 11, 2011, at 4:10 PM, Marius Hofert wrote:
>
>> Dear all,
>>
>> I tried to install the package rgl
Dear all,
I tried to install the package rgl on 10.7. Here's the output:
##
> install.packages("rgl", type="source")
install.packages("rgl", type="source")
Installing package(s) into ‘/Library/Frameworks/R.framework/libr
*thanks* a lot, it now works!
Cheers,
Marius
On 2011-10-11, at 16:48 , Simon Urbanek wrote:
>
> On Oct 11, 2011, at 10:46 AM, Marius Hofert wrote:
>
>>> You permissions are odd - this is not what installed R looks like, you
>>> should see
>>>
&
> You permissions are odd - this is not what installed R looks like, you should
> see
>
> ginaz:Versions$ ls -l
> total 8
> drwxrwxr-x 6 root admin 204 Mar 26 2010 2.12
> drwxrwxr-x 6 root admin 204 Jul 12 15:44 2.13
> drwxrwxr-x 6 root admin 204 Oct 2 11:01 2.14
> drwxrwxr-x 6 root
On 2011-10-11, at 16:19 , Simon Urbanek wrote:
>
> On Oct 11, 2011, at 6:24 AM, Marius Hofert wrote:
>
>> Hi,
>>
>> I have multiple R versions installed and would like to switch between them
>> via setting the symblic link "Current". To make th
t might be useful for
> what you're trying to do.
>
> Cheers,
> Martin
>
>
> On 11 October 2011 11:24, Marius Hofert wrote:
>> Hi,
>>
>> I have multiple R versions installed and would like to switch between them
>> via setting the symblic link "
Hi,
I have multiple R versions installed and would like to switch between them via
setting the symblic link "Current". To make this a bit more convenient, I
defined two "aliases" in .bashrc:
alias R2.13='d=/Library/Frameworks/R.framework/Versions; rm $d/Current; ln -s
$d/2.13 $d/Current'
alias
Dear all,
I would like to use my own library for packages. It should go in
/Library/Frameworks/R.framework.
I therefore created a directory /Library/Frameworks/R.framework/library and now
I would like this to appear as .libPaths()[1] (as default directory used by
install.packages()). I created
Okay, I found out that I have to start R via "R --arch=x86_64", then I can
start R.
I simply created a shell alias and I can now just use "R".
See also the full post:
http://www.mail-archive.com/r-sig-mac@stat.math.ethz.ch/msg02207.html
Begin forwarded message:
&
Hi,
I tried to install R from source on a new MacBook Air running 10.7.1. I
followed the steps in the R-Faq and did:
(1) installed Xcode 4.1
(2) installed a *corresponding* Fortran compiler from
http://r.research.att.com/tools -> "Apple Xcode gcc-42 add-ons" [the
correct version for Xcode 4.1 on
Dear expeRts,
I would like to run R 2.13 and R 2.14 on a MacBook Pro (2.53 GHz Intel Core 2
Duo, 4 GB 1067 MHz DDR3) with Mac OS X 10.6.8. I installed Rswitch to switch
between the two versions. On installing the second version (2.14), I executed
sudo pkgutil --forget org.r-project.R.Leopard.fw.
pkg_version.tar.gz
>
> b
>
> On 2 June 2011 06:54, Marius Hofert wrote:
>> Dear expeRts,
>>
>> I work on the R package "nacopula"
>> (https://r-forge.r-project.org/projects/nacopula/) under Mac OS X 10.6.7
>> (MacBook Pro). The session info
Dear expeRts,
I'm running R version 2.12.1 (Platform: x86_64-apple-darwin9.8.0/x86_64
(64-bit))
on a MacBook Pro under Mac OS X 10.6.6. The following minimal example runs fine
under this setup. However, if I am connected to a server via a VPN client
[Cisco AnyConnect; same with Apple's internal
44 matches
Mail list logo
