Re: [ccp4bb] DNA interaction 2D plot software
Hi, NUCPLOT is good. You could also try: http://utdallas.edu/~hnam/software.php#NuProPlot Sid Dr K S Sidhu Department of Biochemistry 1/61 Henry Wellcome Building Lancaster Road Leicester LE1 9HN Tel: 0116 229 7237 On 16 Oct 2013, at 20:35, Nicolas Foos nicolas.f...@afmb.univ-mrs.fr wrote: Hello, you can try Nucplot. http://www.ebi.ac.uk/thornton-srv/software/NUCPLOT/ Very usefull and tunnable to find and show dsDNA/protein complex. Hope to help. Nicolas Le 16/10/13 21:23, Eike Schulz a écrit : Hello everyone, I would like to display the interactions of a protein dsDNA complex in a simplified 2D plot, similar to what LIGPLOT does for protein ligand interactions. In many articles you find interactions displayed in such a way but as far as I know those are hand-made. In my experience LIGPLOT itself is suboptimal if there are too many interactions to display … Thanks a lot in advance for your suggestions. Eike
[ccp4bb] DNA interaction 2D plot software
Hello everyone, I would like to display the interactions of a protein dsDNA complex in a simplified 2D plot, similar to what LIGPLOT does for protein ligand interactions. In many articles you find interactions displayed in such a way but as far as I know those are hand-made. In my experience LIGPLOT itself is suboptimal if there are too many interactions to display Thanks a lot in advance for your suggestions. Eike
Re: [ccp4bb] DNA interaction 2D plot software
Hello, you can try Nucplot. http://www.ebi.ac.uk/thornton-srv/software/NUCPLOT/ Very usefull and tunnable to find and show dsDNA/protein complex. Hope to help. Nicolas Le 16/10/13 21:23, Eike Schulz a écrit : Hello everyone, I would like to display the interactions of a protein dsDNA complex in a simplified 2D plot, similar to what LIGPLOT does for protein ligand interactions. In many articles you find interactions displayed in such a way but as far as I know those are hand-made. In my experience LIGPLOT itself is suboptimal if there are too many interactions to display … Thanks a lot in advance for your suggestions. Eike
