[cytoscape/cytoscape-impl] 8e69e8: - Labels for the property value columns are now ro...
Branch: refs/heads/develop Home: https://github.com/cytoscape/cytoscape-impl Commit: 8e69e896b1a7b35e52b0f3fd468cf3175ade2013 https://github.com/cytoscape/cytoscape-impl/commit/8e69e896b1a7b35e52b0f3fd468cf3175ade2013 Author: Christian Lopes Date: 2024-01-23 (Tue, 23 Jan 2024) Changed paths: M vizmap-gui-impl/src/main/java/org/cytoscape/view/vizmap/gui/internal/view/VisualPropertySheet.java Log Message: --- - Labels for the property value columns are now rotated and no longer abbreviated; improved tooltips. - Renames the Properties button to "Show Properties", makes the standard button border visible and moves it to the property name column. -- CYTOSCAPE-13128 Commit: ac8d24597eefbe3d5571749806d81c2c905a8ef7 https://github.com/cytoscape/cytoscape-impl/commit/ac8d24597eefbe3d5571749806d81c2c905a8ef7 Author: Christian Lopes Date: 2024-01-25 (Thu, 25 Jan 2024) Changed paths: M vizmap-gui-impl/src/main/java/org/cytoscape/view/vizmap/gui/internal/view/VisualPropertySheet.java Log Message: --- Renames the Properties button to "More Properties" and changes the tooltips -- CYTOSCAPE-13128 Commit: b96d79d53e8bb296e553f3aa9d24eb04181cbb91 https://github.com/cytoscape/cytoscape-impl/commit/b96d79d53e8bb296e553f3aa9d24eb04181cbb91 Author: Christian Lopes Date: 2024-05-08 (Wed, 08 May 2024) Changed paths: M vizmap-gui-impl/src/main/java/org/cytoscape/view/vizmap/gui/internal/view/VisualPropertySheet.java Log Message: --- Merge branch 'feature/vizmapper-rotated-labels' into develop Compare: https://github.com/cytoscape/cytoscape-impl/compare/b590ddade997...b96d79d53e8b To unsubscribe from these emails, change your notification settings at https://github.com/cytoscape/cytoscape-impl/settings/notifications -- You received this message because you are subscribed to the Google Groups "cytoscape-cvs" group. To unsubscribe from this group and stop receiving emails from it, send an email to cytoscape-cvs+unsubscr...@googlegroups.com. To view this discussion on the web visit https://groups.google.com/d/msgid/cytoscape-cvs/cytoscape/cytoscape-impl/push/refs/heads/develop/b590dd-b96d79%40github.com.
[cytoscape/cytoscape-impl]
Branch: refs/heads/feature/new-image-manager-ui Home: https://github.com/cytoscape/cytoscape-impl To unsubscribe from these emails, change your notification settings at https://github.com/cytoscape/cytoscape-impl/settings/notifications -- You received this message because you are subscribed to the Google Groups "cytoscape-cvs" group. To unsubscribe from this group and stop receiving emails from it, send an email to cytoscape-cvs+unsubscr...@googlegroups.com. To view this discussion on the web visit https://groups.google.com/d/msgid/cytoscape-cvs/cytoscape/cytoscape-impl/push/refs/heads/feature/new-image-manager-ui/a8ce40-00%40github.com.
[cytoscape/cytoscape-impl] b590dd: Make sure to name the root network
Branch: refs/heads/develop Home: https://github.com/cytoscape/cytoscape-impl Commit: b590ddade99773f9b7012b0ff43dc770294e1d19 https://github.com/cytoscape/cytoscape-impl/commit/b590ddade99773f9b7012b0ff43dc770294e1d19 Author: Scooter Morris Date: 2024-04-18 (Thu, 18 Apr 2024) Changed paths: M core-task-impl/src/test/java/org/cytoscape/task/internal/table/MappingIntegrationTest.java Log Message: --- Make sure to name the root network To unsubscribe from these emails, change your notification settings at https://github.com/cytoscape/cytoscape-impl/settings/notifications -- You received this message because you are subscribed to the Google Groups "cytoscape-cvs" group. To unsubscribe from this group and stop receiving emails from it, send an email to cytoscape-cvs+unsubscr...@googlegroups.com. To view this discussion on the web visit https://groups.google.com/d/msgid/cytoscape-cvs/cytoscape/cytoscape-impl/push/refs/heads/develop/3e6ae9-b590dd%40github.com.
[cytoscape/cytoscape-impl] 3e6ae9: Fix test failure
Branch: refs/heads/develop Home: https://github.com/cytoscape/cytoscape-impl Commit: 3e6ae99f449dea2a63ee8f98e32baf8fa815d37a https://github.com/cytoscape/cytoscape-impl/commit/3e6ae99f449dea2a63ee8f98e32baf8fa815d37a Author: Scooter Morris Date: 2024-04-18 (Thu, 18 Apr 2024) Changed paths: M table-import-impl/src/main/java/org/cytoscape/tableimport/internal/task/ImportTableDataTask.java Log Message: --- Fix test failure To unsubscribe from these emails, change your notification settings at https://github.com/cytoscape/cytoscape-impl/settings/notifications -- You received this message because you are subscribed to the Google Groups "cytoscape-cvs" group. To unsubscribe from this group and stop receiving emails from it, send an email to cytoscape-cvs+unsubscr...@googlegroups.com. To view this discussion on the web visit https://groups.google.com/d/msgid/cytoscape-cvs/cytoscape/cytoscape-impl/push/refs/heads/develop/6a39a1-3e6ae9%40github.com.
[cytoscape/cytoscape-api] 83e270: Set version to 3.10.3
Branch: refs/heads/release/3.10.3 Home: https://github.com/cytoscape/cytoscape-api Commit: 83e2701ecb8a09ac9dd4279145d135ea8676f270 https://github.com/cytoscape/cytoscape-api/commit/83e2701ecb8a09ac9dd4279145d135ea8676f270 Author: Mike Kucera Date: 2024-04-12 (Fri, 12 Apr 2024) Changed paths: M api-bundle/pom.xml M app-api/pom.xml M application-api/pom.xml M ci-api/pom.xml M command-executor-api/pom.xml M core-task-api/pom.xml M cycl-api/pom.xml M datasource-api/pom.xml M equations-api/pom.xml M event-api/pom.xml M filter-api/pom.xml M group-api/pom.xml M io-api/pom.xml M jobs-api/pom.xml M layout-api/pom.xml M model-api/pom.xml M pom.xml M presentation-api/pom.xml M property-api/pom.xml M service-api/pom.xml M session-api/pom.xml M swing-app-api/pom.xml M swing-application-api/pom.xml M swing-util-api/pom.xml M taglets/pom.xml M util-api/pom.xml M viewmodel-api/pom.xml M vizmap-api/pom.xml M vizmap-gui-api/pom.xml M webservice-api/pom.xml M webservice-swing-api/pom.xml M work-api/pom.xml M work-swing-api/pom.xml Log Message: --- Set version to 3.10.3 To unsubscribe from these emails, change your notification settings at https://github.com/cytoscape/cytoscape-api/settings/notifications -- You received this message because you are subscribed to the Google Groups "cytoscape-cvs" group. To unsubscribe from this group and stop receiving emails from it, send an email to cytoscape-cvs+unsubscr...@googlegroups.com. To view this discussion on the web visit https://groups.google.com/d/msgid/cytoscape-cvs/cytoscape/cytoscape-api/push/refs/heads/release/3.10.3/00-83e270%40github.com.
[cytoscape/cytoscape-app-template] 233c3f: Set version to 3.10.3
Branch: refs/heads/release/3.10.3 Home: https://github.com/cytoscape/cytoscape-app-template Commit: 233c3fd23a8646943e0314c09ba332cb4ebf36f0 https://github.com/cytoscape/cytoscape-app-template/commit/233c3fd23a8646943e0314c09ba332cb4ebf36f0 Author: Mike Kucera Date: 2024-04-12 (Fri, 12 Apr 2024) Changed paths: M pom.xml Log Message: --- Set version to 3.10.3 To unsubscribe from these emails, change your notification settings at https://github.com/cytoscape/cytoscape-app-template/settings/notifications -- You received this message because you are subscribed to the Google Groups "cytoscape-cvs" group. To unsubscribe from this group and stop receiving emails from it, send an email to cytoscape-cvs+unsubscr...@googlegroups.com. To view this discussion on the web visit https://groups.google.com/d/msgid/cytoscape-cvs/cytoscape/cytoscape-app-template/push/refs/heads/release/3.10.3/00-233c3f%40github.com.
[cytoscape/cytoscape-support] c67f0d: Set version to 3.10.3
Branch: refs/heads/release/3.10.3 Home: https://github.com/cytoscape/cytoscape-support Commit: c67f0d3f25ce46be272986b4259b07b2a3abdb25 https://github.com/cytoscape/cytoscape-support/commit/c67f0d3f25ce46be272986b4259b07b2a3abdb25 Author: Mike Kucera Date: 2024-04-12 (Fri, 12 Apr 2024) Changed paths: M archetypes/api-provider-app/pom.xml M archetypes/api-provider-app/src/main/resources/archetype-resources/pom.xml M archetypes/cyaction-app/pom.xml M archetypes/cyaction-app/src/main/resources/archetype-resources/pom.xml M archetypes/cytoscape-starter-app/pom.xml M archetypes/meta-app/pom.xml M archetypes/meta-app/src/main/resources/archetype-resources/pom.xml M archetypes/pom.xml M archetypes/task-app/pom.xml M archetypes/task-app/src/main/resources/archetype-resources/pom.xml M cy-commons-cli/pom.xml M integration-test-support/pom.xml M launch-framework/cmdline/pom.xml M launch-framework/launcher/pom.xml M launch-framework/pom.xml M launch-framework/startlevel-assembly/pom.xml M pom.xml M task-testing-impl/pom.xml Log Message: --- Set version to 3.10.3 To unsubscribe from these emails, change your notification settings at https://github.com/cytoscape/cytoscape-support/settings/notifications -- You received this message because you are subscribed to the Google Groups "cytoscape-cvs" group. To unsubscribe from this group and stop receiving emails from it, send an email to cytoscape-cvs+unsubscr...@googlegroups.com. To view this discussion on the web visit https://groups.google.com/d/msgid/cytoscape-cvs/cytoscape/cytoscape-support/push/refs/heads/release/3.10.3/00-c67f0d%40github.com.
[cytoscape/cytoscape-parent] 57e5ef: Set version to 3.10.3
Branch: refs/heads/release/3.10.3 Home: https://github.com/cytoscape/cytoscape-parent Commit: 57e5ef4e01bfc5fbe6f9c91699ee2ec264d413ad https://github.com/cytoscape/cytoscape-parent/commit/57e5ef4e01bfc5fbe6f9c91699ee2ec264d413ad Author: Mike Kucera Date: 2024-04-12 (Fri, 12 Apr 2024) Changed paths: M pom.xml Log Message: --- Set version to 3.10.3 To unsubscribe from these emails, change your notification settings at https://github.com/cytoscape/cytoscape-parent/settings/notifications -- You received this message because you are subscribed to the Google Groups "cytoscape-cvs" group. To unsubscribe from this group and stop receiving emails from it, send an email to cytoscape-cvs+unsubscr...@googlegroups.com. To view this discussion on the web visit https://groups.google.com/d/msgid/cytoscape-cvs/cytoscape/cytoscape-parent/push/refs/heads/release/3.10.3/00-57e5ef%40github.com.
[cytoscape/cytoscape-impl] cd6ed9: Set version to 3.10.3
Branch: refs/heads/release/3.10.3 Home: https://github.com/cytoscape/cytoscape-impl Commit: cd6ed9576594d5ad8a77c88f3d09c152449261a6 https://github.com/cytoscape/cytoscape-impl/commit/cd6ed9576594d5ad8a77c88f3d09c152449261a6 Author: Mike Kucera Date: 2024-04-12 (Fri, 12 Apr 2024) Changed paths: M app-impl/pom.xml M application-impl/pom.xml M command-executor-impl/pom.xml M core-task-impl/pom.xml M custom-graphics-internal/pom.xml M cycl-impl/pom.xml M datasource-impl/pom.xml M ding-impl/ding-presentation-impl/pom.xml M ding-impl/performance-debug/pom.xml M ding-impl/pom.xml M edge-bundler-impl/pom.xml M editor-impl/pom.xml M equations-functions-impl/pom.xml M equations-impl/pom.xml M event-impl/impl/pom.xml M event-impl/it/pom.xml M event-impl/pom.xml M filter-impl/pom.xml M filter2-impl/pom.xml M graphml-impl/pom.xml M group-impl/pom.xml M gui-cmdline-parser-impl/pom.xml M headless-application-impl/pom.xml M headless-cmdline-parser-impl/pom.xml M io-impl/impl/pom.xml M io-impl/performance/pom.xml M io-impl/pom.xml M jobs-impl/pom.xml M layout-cytoscape-impl/pom.xml M layout-impl/pom.xml M layout-jgraph-impl/pom.xml M layout-prefuse-impl/pom.xml M linkout-impl/pom.xml M log-swing-impl/pom.xml M manual-layout-impl/pom.xml M model-impl/impl/pom.xml M model-impl/it/pom.xml M model-impl/performance-debug/pom.xml M model-impl/performance/pom.xml M model-impl/pom.xml M model-impl/table-performance-debug/pom.xml M pom.xml M presentation-impl/pom.xml M property-impl/pom.xml M search2-impl/pom.xml M session-impl/impl/pom.xml M session-impl/integration-test/pom.xml M session-impl/pom.xml M swing-application-impl/pom.xml M swing-util-impl/pom.xml M table-browser-impl/pom.xml M table-import-impl/pom.xml M table-presentation-impl/pom.xml M util-impl/pom.xml M viewmodel-impl/impl/pom.xml M viewmodel-impl/it/pom.xml M viewmodel-impl/pom.xml M vizmap-gui-core-impl/pom.xml M vizmap-gui-impl/pom.xml M vizmap-impl/impl/pom.xml M vizmap-impl/it/pom.xml M vizmap-impl/pom.xml M webservice-impl/pom.xml M work-headless-impl/pom.xml M work-impl/pom.xml M work-swing-impl/impl/pom.xml M work-swing-impl/it/pom.xml M work-swing-impl/pom.xml Log Message: --- Set version to 3.10.3 To unsubscribe from these emails, change your notification settings at https://github.com/cytoscape/cytoscape-impl/settings/notifications -- You received this message because you are subscribed to the Google Groups "cytoscape-cvs" group. To unsubscribe from this group and stop receiving emails from it, send an email to cytoscape-cvs+unsubscr...@googlegroups.com. To view this discussion on the web visit https://groups.google.com/d/msgid/cytoscape-cvs/cytoscape/cytoscape-impl/push/refs/heads/release/3.10.3/00-cd6ed9%40github.com.
[cytoscape/cytoscape] 2e34f9: Set version to 3.10.3
Branch: refs/heads/release/3.10.3 Home: https://github.com/cytoscape/cytoscape Commit: 2e34f920f1c70475797b0c3039baaa3c895a375b https://github.com/cytoscape/cytoscape/commit/2e34f920f1c70475797b0c3039baaa3c895a375b Author: Mike Kucera Date: 2024-04-12 (Fri, 12 Apr 2024) Changed paths: M pom.xml Log Message: --- Set version to 3.10.3 To unsubscribe from these emails, change your notification settings at https://github.com/cytoscape/cytoscape/settings/notifications -- You received this message because you are subscribed to the Google Groups "cytoscape-cvs" group. To unsubscribe from this group and stop receiving emails from it, send an email to cytoscape-cvs+unsubscr...@googlegroups.com. To view this discussion on the web visit https://groups.google.com/d/msgid/cytoscape-cvs/cytoscape/cytoscape/push/refs/heads/release/3.10.3/00-2e34f9%40github.com.
[cytoscape/cytoscape-impl] 39775d: Make collapse/expand more robust to ensure that we...
Branch: refs/heads/release/3.10.3 Home: https://github.com/cytoscape/cytoscape-impl Commit: 39775dd3ba383f2ca7b88b27c6cfd4b3c25a33b2 https://github.com/cytoscape/cytoscape-impl/commit/39775dd3ba383f2ca7b88b27c6cfd4b3c25a33b2 Author: Scooter Morris Date: 2024-04-12 (Fri, 12 Apr 2024) Changed paths: M group-impl/src/main/java/org/cytoscape/group/internal/CyGroupImpl.java Log Message: --- Make collapse/expand more robust to ensure that we don't lose any edges along the way. To unsubscribe from these emails, change your notification settings at https://github.com/cytoscape/cytoscape-impl/settings/notifications -- You received this message because you are subscribed to the Google Groups "cytoscape-cvs" group. To unsubscribe from this group and stop receiving emails from it, send an email to cytoscape-cvs+unsubscr...@googlegroups.com. To view this discussion on the web visit https://groups.google.com/d/msgid/cytoscape-cvs/cytoscape/cytoscape-impl/push/refs/heads/release/3.10.3/cd6ed9-39775d%40github.com.
[cytoscape/cytoscape-gui-distribution] 0b900c: Set version to 3.10.3
Branch: refs/heads/release/3.10.3 Home: https://github.com/cytoscape/cytoscape-gui-distribution Commit: 0b900c3f6688ee9cae7989ef55356d2f28e32316 https://github.com/cytoscape/cytoscape-gui-distribution/commit/0b900c3f6688ee9cae7989ef55356d2f28e32316 Author: Mike Kucera Date: 2024-04-12 (Fri, 12 Apr 2024) Changed paths: M application-metadata-impl/pom.xml M assembly/pom.xml M assembly/src/main/bin/cytoscape.bat M assembly/src/main/bin/cytoscape.sh M branding/pom.xml M cmdline-impl/pom.xml M diagnostics/pom.xml M features/pom.xml M integration-test/pom.xml M launcher/pom.xml M packaging/pom.xml M pom.xml M splash-launcher/pom.xml M splash-updater-impl/pom.xml M third-party/pom.xml Log Message: --- Set version to 3.10.3 To unsubscribe from these emails, change your notification settings at https://github.com/cytoscape/cytoscape-gui-distribution/settings/notifications -- You received this message because you are subscribed to the Google Groups "cytoscape-cvs" group. To unsubscribe from this group and stop receiving emails from it, send an email to cytoscape-cvs+unsubscr...@googlegroups.com. To view this discussion on the web visit https://groups.google.com/d/msgid/cytoscape-cvs/cytoscape/cytoscape-gui-distribution/push/refs/heads/release/3.10.3/00-0b900c%40github.com.
[cytoscape/cytoscape-impl] 6a39a1: First shot at fixing CYTOSCAPE-13135. Be much mor...
Branch: refs/heads/develop Home: https://github.com/cytoscape/cytoscape-impl Commit: 6a39a180bf4d792408bc503c387e86f46ce12a30 https://github.com/cytoscape/cytoscape-impl/commit/6a39a180bf4d792408bc503c387e86f46ce12a30 Author: Scooter Morris Date: 2024-04-11 (Thu, 11 Apr 2024) Changed paths: M table-import-impl/src/main/java/org/cytoscape/tableimport/internal/task/ImportTableDataTask.java Log Message: --- First shot at fixing CYTOSCAPE-13135. Be much more pragmatic about enforcing column naming across networks. If we're creating a local column, and that column doesn't exist as a shared column, we should go ahead and do it. To unsubscribe from these emails, change your notification settings at https://github.com/cytoscape/cytoscape-impl/settings/notifications -- You received this message because you are subscribed to the Google Groups "cytoscape-cvs" group. To unsubscribe from this group and stop receiving emails from it, send an email to cytoscape-cvs+unsubscr...@googlegroups.com. To view this discussion on the web visit https://groups.google.com/d/msgid/cytoscape-cvs/cytoscape/cytoscape-impl/push/refs/heads/develop/811ac3-6a39a1%40github.com.
[cytoscape/cytoscape-impl] 811ac3: Make collapse/expand more robust to ensure that we...
Branch: refs/heads/develop Home: https://github.com/cytoscape/cytoscape-impl Commit: 811ac31cb38add6f305989c1dc64af4247d65f06 https://github.com/cytoscape/cytoscape-impl/commit/811ac31cb38add6f305989c1dc64af4247d65f06 Author: Scooter Morris Date: 2024-03-26 (Tue, 26 Mar 2024) Changed paths: M group-impl/src/main/java/org/cytoscape/group/internal/CyGroupImpl.java Log Message: --- Make collapse/expand more robust to ensure that we don't lose any edges along the way. To unsubscribe from these emails, change your notification settings at https://github.com/cytoscape/cytoscape-impl/settings/notifications -- You received this message because you are subscribed to the Google Groups "cytoscape-cvs" group. To unsubscribe from this group and stop receiving emails from it, send an email to cytoscape-cvs+unsubscr...@googlegroups.com. To view this discussion on the web visit https://groups.google.com/d/msgid/cytoscape-cvs/cytoscape/cytoscape-impl/push/refs/heads/develop/b8daf9-811ac3%40github.com.
[cytoscape/cytoscape] 22f1d6: Update the path of news.html in README.md
Branch: refs/heads/develop Home: https://github.com/cytoscape/cytoscape Commit: 22f1d62f40b8f002c59341526cb8e8a52085a3eb https://github.com/cytoscape/cytoscape/commit/22f1d62f40b8f002c59341526cb8e8a52085a3eb Author: Jing Chen Date: 2024-03-26 (Tue, 26 Mar 2024) Changed paths: M README.md Log Message: --- Update the path of news.html in README.md Updated the server name and file path of http://chianti.ucsd.edu/cytoscape-news/news.html Commit: 1bd93e3959d7be66b1003edd7af505bbf2bfb932 https://github.com/cytoscape/cytoscape/commit/1bd93e3959d7be66b1003edd7af505bbf2bfb932 Author: Jing Chen Date: 2024-03-26 (Tue, 26 Mar 2024) Changed paths: M README.md Log Message: --- Merge pull request #24 from cytoscape/jingjingbic-patch-1 Update the path of news.html in README.md Compare: https://github.com/cytoscape/cytoscape/compare/0a703dab1a50...1bd93e3959d7 To unsubscribe from these emails, change your notification settings at https://github.com/cytoscape/cytoscape/settings/notifications -- You received this message because you are subscribed to the Google Groups "cytoscape-cvs" group. To unsubscribe from this group and stop receiving emails from it, send an email to cytoscape-cvs+unsubscr...@googlegroups.com. To view this discussion on the web visit https://groups.google.com/d/msgid/cytoscape-cvs/cytoscape/cytoscape/push/refs/heads/develop/0a703d-1bd93e%40github.com.
[cytoscape/cytoscape] 22f1d6: Update the path of news.html in README.md
Branch: refs/heads/jingjingbic-patch-1 Home: https://github.com/cytoscape/cytoscape Commit: 22f1d62f40b8f002c59341526cb8e8a52085a3eb https://github.com/cytoscape/cytoscape/commit/22f1d62f40b8f002c59341526cb8e8a52085a3eb Author: Jing Chen Date: 2024-03-26 (Tue, 26 Mar 2024) Changed paths: M README.md Log Message: --- Update the path of news.html in README.md Updated the server name and file path of http://chianti.ucsd.edu/cytoscape-news/news.html To unsubscribe from these emails, change your notification settings at https://github.com/cytoscape/cytoscape/settings/notifications -- You received this message because you are subscribed to the Google Groups "cytoscape-cvs" group. To unsubscribe from this group and stop receiving emails from it, send an email to cytoscape-cvs+unsubscr...@googlegroups.com. To view this discussion on the web visit https://groups.google.com/d/msgid/cytoscape-cvs/cytoscape/cytoscape/push/refs/heads/jingjingbic-patch-1/00-22f1d6%40github.com.
[cytoscape/cytoscape]
Branch: refs/tags/3.10.2 Home: https://github.com/cytoscape/cytoscape To unsubscribe from these emails, change your notification settings at https://github.com/cytoscape/cytoscape/settings/notifications -- You received this message because you are subscribed to the Google Groups "cytoscape-cvs" group. To unsubscribe from this group and stop receiving emails from it, send an email to cytoscape-cvs+unsubscr...@googlegroups.com. To view this discussion on the web visit https://groups.google.com/d/msgid/cytoscape-cvs/cytoscape/cytoscape/push/refs/tags/3.10.2/00-358a57%40github.com.
[cytoscape/cytoscape-impl] d99858: Fix CYTOSCAPE-13133
Branch: refs/heads/release/3.10.2 Home: https://github.com/cytoscape/cytoscape-impl Commit: d99858f33ec182ba49c93b9c4028b68b1ab70153 https://github.com/cytoscape/cytoscape-impl/commit/d99858f33ec182ba49c93b9c4028b68b1ab70153 Author: yihangx Date: 2024-03-07 (Thu, 07 Mar 2024) Changed paths: M app-impl/src/main/java/org/cytoscape/app/internal/action/UpdateNotificationAction.java M app-impl/src/main/java/org/cytoscape/app/internal/task/AppManagerTask.java M app-impl/src/main/resources/AppManager/AppManager.html Log Message: --- Fix CYTOSCAPE-13133 To unsubscribe from these emails, change your notification settings at https://github.com/cytoscape/cytoscape-impl/settings/notifications -- You received this message because you are subscribed to the Google Groups "cytoscape-cvs" group. To unsubscribe from this group and stop receiving emails from it, send an email to cytoscape-cvs+unsubscr...@googlegroups.com. To view this discussion on the web visit https://groups.google.com/d/msgid/cytoscape-cvs/cytoscape/cytoscape-impl/push/refs/heads/release/3.10.2/f82607-d99858%40github.com.
[cytoscape/cytoscape-impl] b8daf9: Fix CYTOSCAPE-13133
Branch: refs/heads/develop Home: https://github.com/cytoscape/cytoscape-impl Commit: b8daf9c56b1ecdaa727935792814e8dcbd213451 https://github.com/cytoscape/cytoscape-impl/commit/b8daf9c56b1ecdaa727935792814e8dcbd213451 Author: yihangx Date: 2024-03-06 (Wed, 06 Mar 2024) Changed paths: M app-impl/src/main/java/org/cytoscape/app/internal/action/UpdateNotificationAction.java M app-impl/src/main/java/org/cytoscape/app/internal/task/AppManagerTask.java M app-impl/src/main/resources/AppManager/AppManager.html Log Message: --- Fix CYTOSCAPE-13133 To unsubscribe from these emails, change your notification settings at https://github.com/cytoscape/cytoscape-impl/settings/notifications -- You received this message because you are subscribed to the Google Groups "cytoscape-cvs" group. To unsubscribe from this group and stop receiving emails from it, send an email to cytoscape-cvs+unsubscr...@googlegroups.com. To view this discussion on the web visit https://groups.google.com/d/msgid/cytoscape-cvs/cytoscape/cytoscape-impl/push/refs/heads/develop/2da315-b8daf9%40github.com.
[cytoscape/cytoscape-gui-distribution] 761385: Update .travis.yml to use Java 17
Branch: refs/heads/develop Home: https://github.com/cytoscape/cytoscape-gui-distribution Commit: 76138517e0f733d2cb8698e661cfa46d743e0433 https://github.com/cytoscape/cytoscape-gui-distribution/commit/76138517e0f733d2cb8698e661cfa46d743e0433 Author: Jing Chen Date: 2024-02-22 (Thu, 22 Feb 2024) Changed paths: M .travis.yml Log Message: --- Update .travis.yml to use Java 17 Commit: 51af388e715d873caa80a8487674c624f5f48d48 https://github.com/cytoscape/cytoscape-gui-distribution/commit/51af388e715d873caa80a8487674c624f5f48d48 Author: Jing Chen Date: 2024-02-26 (Mon, 26 Feb 2024) Changed paths: M .travis.yml Log Message: --- Merge pull request #11 from cytoscape/jingjingbic-patch-1 Update .travis.yml to use Java 17 Compare: https://github.com/cytoscape/cytoscape-gui-distribution/compare/e77c6a2f8266...51af388e715d To unsubscribe from these emails, change your notification settings at https://github.com/cytoscape/cytoscape-gui-distribution/settings/notifications -- You received this message because you are subscribed to the Google Groups "cytoscape-cvs" group. To unsubscribe from this group and stop receiving emails from it, send an email to cytoscape-cvs+unsubscr...@googlegroups.com. To view this discussion on the web visit https://groups.google.com/d/msgid/cytoscape-cvs/cytoscape/cytoscape-gui-distribution/push/refs/heads/develop/e77c6a-51af38%40github.com.
[cytoscape/cytoscape-gui-distribution] d04e6b: Update the cx-support version to fix NPE.
Branch: refs/heads/release/3.10.2 Home: https://github.com/cytoscape/cytoscape-gui-distribution Commit: d04e6b0f1ffdc21fc190b355c040ba3bd571ba4f https://github.com/cytoscape/cytoscape-gui-distribution/commit/d04e6b0f1ffdc21fc190b355c040ba3bd571ba4f Author: jingjingbic Date: 2024-02-26 (Mon, 26 Feb 2024) Changed paths: M assembly/pom.xml Log Message: --- Update the cx-support version to fix NPE. To unsubscribe from these emails, change your notification settings at https://github.com/cytoscape/cytoscape-gui-distribution/settings/notifications -- You received this message because you are subscribed to the Google Groups "cytoscape-cvs" group. To unsubscribe from this group and stop receiving emails from it, send an email to cytoscape-cvs+unsubscr...@googlegroups.com. To view this discussion on the web visit https://groups.google.com/d/msgid/cytoscape-cvs/cytoscape/cytoscape-gui-distribution/push/refs/heads/release/3.10.2/7927b6-d04e6b%40github.com.
[cytoscape/cytoscape-gui-distribution] 761385: Update .travis.yml to use Java 17
Branch: refs/heads/jingjingbic-patch-1 Home: https://github.com/cytoscape/cytoscape-gui-distribution Commit: 76138517e0f733d2cb8698e661cfa46d743e0433 https://github.com/cytoscape/cytoscape-gui-distribution/commit/76138517e0f733d2cb8698e661cfa46d743e0433 Author: Jing Chen Date: 2024-02-22 (Thu, 22 Feb 2024) Changed paths: M .travis.yml Log Message: --- Update .travis.yml to use Java 17 To unsubscribe from these emails, change your notification settings at https://github.com/cytoscape/cytoscape-gui-distribution/settings/notifications -- You received this message because you are subscribed to the Google Groups "cytoscape-cvs" group. To unsubscribe from this group and stop receiving emails from it, send an email to cytoscape-cvs+unsubscr...@googlegroups.com. To view this discussion on the web visit https://groups.google.com/d/msgid/cytoscape-cvs/cytoscape/cytoscape-gui-distribution/push/refs/heads/jingjingbic-patch-1/00-761385%40github.com.
[cytoscape/cytoscape-gui-distribution] e77c6a: Update the cx-support version to fix NPE.
Branch: refs/heads/develop Home: https://github.com/cytoscape/cytoscape-gui-distribution Commit: e77c6a2f8266f56f4d8c1d27aea82a4028aa9b83 https://github.com/cytoscape/cytoscape-gui-distribution/commit/e77c6a2f8266f56f4d8c1d27aea82a4028aa9b83 Author: jingjingbic Date: 2024-02-22 (Thu, 22 Feb 2024) Changed paths: M assembly/pom.xml Log Message: --- Update the cx-support version to fix NPE. To unsubscribe from these emails, change your notification settings at https://github.com/cytoscape/cytoscape-gui-distribution/settings/notifications -- You received this message because you are subscribed to the Google Groups "cytoscape-cvs" group. To unsubscribe from this group and stop receiving emails from it, send an email to cytoscape-cvs+unsubscr...@googlegroups.com. To view this discussion on the web visit https://groups.google.com/d/msgid/cytoscape-cvs/cytoscape/cytoscape-gui-distribution/push/refs/heads/develop/c4b705-e77c6a%40github.com.
[cytoscape/cytoscape-gui-distribution] dbfb5e: Bump analyzer version from '4.4.8' to '4.5.0'
Branch: refs/heads/release/3.10.2 Home: https://github.com/cytoscape/cytoscape-gui-distribution Commit: dbfb5edf47e067c0af03b1efa8b1daa9fe66069d https://github.com/cytoscape/cytoscape-gui-distribution/commit/dbfb5edf47e067c0af03b1efa8b1daa9fe66069d Author: Yihang Xin <46608109+yiha...@users.noreply.github.com> Date: 2024-02-21 (Wed, 21 Feb 2024) Changed paths: M assembly/pom.xml Log Message: --- Bump analyzer version from '4.4.8' to '4.5.0' Commit: 795532c32e61dbbd09b0877321129c7e5faab7b2 https://github.com/cytoscape/cytoscape-gui-distribution/commit/795532c32e61dbbd09b0877321129c7e5faab7b2 Author: Chris Churas Date: 2024-02-21 (Wed, 21 Feb 2024) Changed paths: M assembly/pom.xml Log Message: --- bump diffusion to 1.6.4 Commit: 7927b6587abbe9ded259d36ff74a3b1c93515a21 https://github.com/cytoscape/cytoscape-gui-distribution/commit/7927b6587abbe9ded259d36ff74a3b1c93515a21 Author: jingjingbic Date: 2024-02-21 (Wed, 21 Feb 2024) Changed paths: M assembly/pom.xml Log Message: --- Upgrade cx-support core app. Compare: https://github.com/cytoscape/cytoscape-gui-distribution/compare/8cd5de85080a...7927b6587abb To unsubscribe from these emails, change your notification settings at https://github.com/cytoscape/cytoscape-gui-distribution/settings/notifications -- You received this message because you are subscribed to the Google Groups "cytoscape-cvs" group. To unsubscribe from this group and stop receiving emails from it, send an email to cytoscape-cvs+unsubscr...@googlegroups.com. To view this discussion on the web visit https://groups.google.com/d/msgid/cytoscape-cvs/cytoscape/cytoscape-gui-distribution/push/refs/heads/release/3.10.2/8cd5de-7927b6%40github.com.
[cytoscape/cytoscape-gui-distribution] c4b705: Upgrade cx-support core app.
Branch: refs/heads/develop Home: https://github.com/cytoscape/cytoscape-gui-distribution Commit: c4b705d28ee06b59521431bb3bd830c73f684227 https://github.com/cytoscape/cytoscape-gui-distribution/commit/c4b705d28ee06b59521431bb3bd830c73f684227 Author: jingjingbic Date: 2024-02-15 (Thu, 15 Feb 2024) Changed paths: M assembly/pom.xml Log Message: --- Upgrade cx-support core app. -- You received this message because you are subscribed to the Google Groups "cytoscape-cvs" group. To unsubscribe from this group and stop receiving emails from it, send an email to cytoscape-cvs+unsubscr...@googlegroups.com. To view this discussion on the web visit https://groups.google.com/d/msgid/cytoscape-cvs/cytoscape/cytoscape-gui-distribution/push/refs/heads/develop/ee8dd1-c4b705%40github.com.
[cytoscape/cytoscape-admin-scripts] dea30e: set max version to 17 since it is the only safe on...
Branch: refs/heads/master Home: https://github.com/cytoscape/cytoscape-admin-scripts Commit: dea30e886d6c8303dbee36ec9dc23b5eb17b2bd0 https://github.com/cytoscape/cytoscape-admin-scripts/commit/dea30e886d6c8303dbee36ec9dc23b5eb17b2bd0 Author: Chris Churas Date: 2024-02-14 (Wed, 14 Feb 2024) Changed paths: M system-checker/windows.bat Log Message: --- set max version to 17 since it is the only safe one to use. also updated java 17 download link. fix for CYTOSCAPE-13130 -- You received this message because you are subscribed to the Google Groups "cytoscape-cvs" group. To unsubscribe from this group and stop receiving emails from it, send an email to cytoscape-cvs+unsubscr...@googlegroups.com. To view this discussion on the web visit https://groups.google.com/d/msgid/cytoscape-cvs/cytoscape/cytoscape-admin-scripts/push/refs/heads/master/19a8c1-dea30e%40github.com.
[cytoscape/cytoscape-admin-scripts] 19a8c1: updated link for java download to version 17. part...
Branch: refs/heads/master Home: https://github.com/cytoscape/cytoscape-admin-scripts Commit: 19a8c11989b30b6a463ef48a7a91baf15e74412e https://github.com/cytoscape/cytoscape-admin-scripts/commit/19a8c11989b30b6a463ef48a7a91baf15e74412e Author: Chris Churas Date: 2024-02-14 (Wed, 14 Feb 2024) Changed paths: M system-checker/linux.sh Log Message: --- updated link for java download to version 17. partial fix for CYTOSCAPE-13130 -- You received this message because you are subscribed to the Google Groups "cytoscape-cvs" group. To unsubscribe from this group and stop receiving emails from it, send an email to cytoscape-cvs+unsubscr...@googlegroups.com. To view this discussion on the web visit https://groups.google.com/d/msgid/cytoscape-cvs/cytoscape/cytoscape-admin-scripts/push/refs/heads/master/1f6144-19a8c1%40github.com.
[cytoscape/cytoscape-admin-scripts] 1f6144: updated to let user know they need java 17 instead...
Branch: refs/heads/master Home: https://github.com/cytoscape/cytoscape-admin-scripts Commit: 1f614456cd8f7cae83ee5b92f821d0cb175f70ba https://github.com/cytoscape/cytoscape-admin-scripts/commit/1f614456cd8f7cae83ee5b92f821d0cb175f70ba Author: Chris Churas Date: 2024-02-14 (Wed, 14 Feb 2024) Changed paths: M system-checker/mac.sh Log Message: --- updated to let user know they need java 17 instead of 11. partial fix for CYTOSCAPE-13130 -- You received this message because you are subscribed to the Google Groups "cytoscape-cvs" group. To unsubscribe from this group and stop receiving emails from it, send an email to cytoscape-cvs+unsubscr...@googlegroups.com. To view this discussion on the web visit https://groups.google.com/d/msgid/cytoscape-cvs/cytoscape/cytoscape-admin-scripts/push/refs/heads/master/1b33ff-1f6144%40github.com.
[cytoscape/cytoscape-impl] f82607: Minor tweaks to: size of session panels; borders, ...
Branch: refs/heads/release/3.10.2 Home: https://github.com/cytoscape/cytoscape-impl Commit: f8260754c692bb036113f613fae9fbd16bec74f9 https://github.com/cytoscape/cytoscape-impl/commit/f8260754c692bb036113f613fae9fbd16bec74f9 Author: Christian Lopes Date: 2024-02-14 (Wed, 14 Feb 2024) Changed paths: M swing-application-impl/src/main/java/org/cytoscape/internal/view/StarterPanel.java Log Message: --- Minor tweaks to: size of session panels; borders, gradients and preferred size of session lists -- CYTOSCAPE-13129 -- You received this message because you are subscribed to the Google Groups "cytoscape-cvs" group. To unsubscribe from this group and stop receiving emails from it, send an email to cytoscape-cvs+unsubscr...@googlegroups.com. To view this discussion on the web visit https://groups.google.com/d/msgid/cytoscape-cvs/cytoscape/cytoscape-impl/push/refs/heads/release/3.10.2/31cba0-f82607%40github.com.
[cytoscape/cytoscape-impl] e17651: CYTOSCAPE-13121 Make (default) more visible in lay...
Branch: refs/heads/release/3.10.2 Home: https://github.com/cytoscape/cytoscape-impl Commit: e17651cff1c7bcbd72648287c0572c43f5f6bd1c https://github.com/cytoscape/cytoscape-impl/commit/e17651cff1c7bcbd72648287c0572c43f5f6bd1c Author: Mike Kucera Date: 2024-01-08 (Mon, 08 Jan 2024) Changed paths: M swing-application-impl/src/main/java/org/cytoscape/internal/layout/ui/LayoutSettingsDialog.java Log Message: --- CYTOSCAPE-13121 Make (default) more visible in layout settings dialog Commit: 6061da09d767623e4c765ac6aee4b4b8603a1c23 https://github.com/cytoscape/cytoscape-impl/commit/6061da09d767623e4c765ac6aee4b4b8603a1c23 Author: Scooter Morris Date: 2024-01-08 (Mon, 08 Jan 2024) Changed paths: M io-impl/impl/src/main/java/org/cytoscape/io/internal/read/gml/GMLParser.java Log Message: --- Modified GMLParser to wrap whitespace around start and end list. Fixes CYTOSCAPE-13107 Commit: c70ea37f4268b3a56d717f472e82627df53b1ad5 https://github.com/cytoscape/cytoscape-impl/commit/c70ea37f4268b3a56d717f472e82627df53b1ad5 Author: Scooter Morris Date: 2024-01-08 (Mon, 08 Jan 2024) Changed paths: M linkout-impl/src/main/resources/linkout.props Log Message: --- OK, adjusted URI format. For some reason, the uniprot web site doesn't load using CyBrowser, so this will only work if you use the system browser. CYTOSCAPE-13104 Commit: b38f5866dbe74419bf16ac6eabfd8325f5c16193 https://github.com/cytoscape/cytoscape-impl/commit/b38f5866dbe74419bf16ac6eabfd8325f5c16193 Author: Scooter Morris Date: 2024-01-08 (Mon, 08 Jan 2024) Changed paths: M linkout-impl/src/main/resources/linkout.props Log Message: --- CYTOSCAPE-13104 -- just removed the gene: to do a more generic search Commit: 20cf9161147fb7d3f69d88a685c9be3df953706e https://github.com/cytoscape/cytoscape-impl/commit/20cf9161147fb7d3f69d88a685c9be3df953706e Author: Christian Lopes Date: 2024-01-11 (Thu, 11 Jan 2024) Changed paths: M ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/icon/ArrowIcon.java M ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/icon/VisualPropertyIconFactory.java M vizmap-gui-impl/src/main/java/org/cytoscape/view/vizmap/gui/internal/view/cellrenderer/IconCellRenderer.java Log Message: --- Fixes the icons for edge arrows on the VizMapper: incorrect proportions (e.g. CIRCLE, SQUARE), misalignments (HALF_TOP, HALF_BOTTOM), incorrect edge intersection (ARROWs). Commit: 1576051b0176e3883786b0d29175d4f16c33a678 https://github.com/cytoscape/cytoscape-impl/commit/1576051b0176e3883786b0d29175d4f16c33a678 Author: Mike Kucera Date: 2024-02-01 (Thu, 01 Feb 2024) Changed paths: M search2-impl/src/main/java/org/cytoscape/search/internal/index/CustomMultiFieldQueryParser.java Log Message: --- CYTOSCAPE-13113 allow leading wildcard in lucene search Commit: 20a25f79cbc810a757e5adffa7f189a48584549e https://github.com/cytoscape/cytoscape-impl/commit/20a25f79cbc810a757e5adffa7f189a48584549e Author: Mike Kucera Date: 2024-02-01 (Thu, 01 Feb 2024) Changed paths: M work-swing-impl/impl/src/main/java/org/cytoscape/work/internal/task/SwingTaskMonitor.java Log Message: --- CYTOSCAPE-13126 Move history.addMessage() off the EDT. Reformat code. Commit: fa24c1f32f31398cfe4fd120e5afd5e0fd3ef03f https://github.com/cytoscape/cytoscape-impl/commit/fa24c1f32f31398cfe4fd120e5afd5e0fd3ef03f Author: Mike Kucera Date: 2024-02-01 (Thu, 01 Feb 2024) Changed paths: M work-swing-impl/impl/src/main/java/org/cytoscape/work/internal/task/TaskHistory.java M work-swing-impl/impl/src/main/java/org/cytoscape/work/internal/view/TaskHistoryWindow.java Log Message: --- CYTOSCAPE-13126 TaskHistory max size. TaskHistoryWindow debounce. Reformat code. Commit: 24895b04555744f9dbaa672244e750c47764119a https://github.com/cytoscape/cytoscape-impl/commit/24895b04555744f9dbaa672244e750c47764119a Author: Scooter Morris Date: 2024-02-05 (Mon, 05 Feb 2024) Changed paths: M group-impl/src/main/java/org/cytoscape/group/internal/CyActivator.java M group-impl/src/main/java/org/cytoscape/group/internal/view/NodeChangeListener.java Log Message: --- Possible fix for CYTOSCAPE-13125 We registered the SessionLoaded listener, which clears all of the maps and we added a NetworkViewAboutToBeDestroyed listener to remove the keys from the maps as the view goes away. Commit: d3b2afbbded887c6c24c2c081057f8aacce0d0a9 https://github.com/cytoscape/cytoscape-impl/commit/d3b2afbbded887c6c24c2c081057f8aacce0d0a9 Author: Christian Lopes Date: 2024-02-08 (Thu, 08 Feb 2024) Changed paths: M swing-application-impl/src/main/java/org/cytoscape/internal/CyActivator.java M swing-application-impl/src
[cytoscape/cytoscape-impl]
Branch: refs/heads/release/3.10.2 Home: https://github.com/cytoscape/cytoscape-impl -- You received this message because you are subscribed to the Google Groups "cytoscape-cvs" group. To unsubscribe from this group and stop receiving emails from it, send an email to cytoscape-cvs+unsubscr...@googlegroups.com. To view this discussion on the web visit https://groups.google.com/d/msgid/cytoscape-cvs/cytoscape/cytoscape-impl/push/refs/heads/release/3.10.2/4656f3-c6256a%40github.com.
[cytoscape/cytoscape-impl] c6256a: Fix CYTOSCAPE-13089
Branch: refs/heads/release/3.10.2 Home: https://github.com/cytoscape/cytoscape-impl Commit: c6256a33f3c9139a7037b0d22931a81804e5999f https://github.com/cytoscape/cytoscape-impl/commit/c6256a33f3c9139a7037b0d22931a81804e5999f Author: yihangx Date: 2024-02-13 (Tue, 13 Feb 2024) Changed paths: A editor-impl/src/main/java/org/cytoscape/editor/internal/SIFInterpreterEdgeEdit.java A editor-impl/src/main/java/org/cytoscape/editor/internal/SIFInterpreterNodeEdit.java M editor-impl/src/main/java/org/cytoscape/editor/internal/SIFInterpreterTask.java Log Message: --- Fix CYTOSCAPE-13089 Commit: 4656f3d62ffcf545ad1bd4bbfc7754cf4fd10238 https://github.com/cytoscape/cytoscape-impl/commit/4656f3d62ffcf545ad1bd4bbfc7754cf4fd10238 Author: yihangx Date: 2024-02-13 (Tue, 13 Feb 2024) Changed paths: M ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/icon/ArrowIcon.java M ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/icon/VisualPropertyIconFactory.java M group-impl/src/main/java/org/cytoscape/group/internal/CyActivator.java M group-impl/src/main/java/org/cytoscape/group/internal/view/NodeChangeListener.java M io-impl/impl/src/main/java/org/cytoscape/io/internal/read/gml/GMLParser.java M linkout-impl/src/main/resources/linkout.props M search2-impl/src/main/java/org/cytoscape/search/internal/index/CustomMultiFieldQueryParser.java M swing-application-impl/src/main/java/org/cytoscape/internal/CyActivator.java M swing-application-impl/src/main/java/org/cytoscape/internal/layout/ui/LayoutSettingsDialog.java M swing-application-impl/src/main/java/org/cytoscape/internal/view/StarterPanel.java A swing-application-impl/src/main/java/org/cytoscape/internal/view/help/HelpLinkTaskFactory.java A swing-application-impl/src/main/java/org/cytoscape/internal/view/util/SVGIcon.java A swing-application-impl/src/main/resources/images/python-logo.svg A swing-application-impl/src/main/resources/images/r-logo.svg M vizmap-gui-impl/src/main/java/org/cytoscape/view/vizmap/gui/internal/view/cellrenderer/IconCellRenderer.java M work-swing-impl/impl/src/main/java/org/cytoscape/work/internal/task/SwingTaskMonitor.java M work-swing-impl/impl/src/main/java/org/cytoscape/work/internal/task/TaskHistory.java M work-swing-impl/impl/src/main/java/org/cytoscape/work/internal/view/TaskHistoryWindow.java Log Message: --- Merge branch 'release/3.10.2' of github.com:cytoscape/cytoscape-impl into release/3.10.2 Compare: https://github.com/cytoscape/cytoscape-impl/compare/d3b2afbbded8...4656f3d62ffc -- You received this message because you are subscribed to the Google Groups "cytoscape-cvs" group. To unsubscribe from this group and stop receiving emails from it, send an email to cytoscape-cvs+unsubscr...@googlegroups.com. To view this discussion on the web visit https://groups.google.com/d/msgid/cytoscape-cvs/cytoscape/cytoscape-impl/push/refs/heads/release/3.10.2/d3b2af-4656f3%40github.com.
[cytoscape/cytoscape-impl] 2da315: Fix CYTOSCAPE-13089
Branch: refs/heads/develop Home: https://github.com/cytoscape/cytoscape-impl Commit: 2da3155cb94f0690220981587848ae04f1ba67cc https://github.com/cytoscape/cytoscape-impl/commit/2da3155cb94f0690220981587848ae04f1ba67cc Author: Yihang Xin <46608109+yiha...@users.noreply.github.com> Date: 2024-02-13 (Tue, 13 Feb 2024) Changed paths: A editor-impl/src/main/java/org/cytoscape/editor/internal/SIFInterpreterNodeEdit.java Log Message: --- Fix CYTOSCAPE-13089 -- You received this message because you are subscribed to the Google Groups "cytoscape-cvs" group. To unsubscribe from this group and stop receiving emails from it, send an email to cytoscape-cvs+unsubscr...@googlegroups.com. To view this discussion on the web visit https://groups.google.com/d/msgid/cytoscape-cvs/cytoscape/cytoscape-impl/push/refs/heads/develop/c3705e-2da315%40github.com.
[cytoscape/cytoscape-impl] c3705e: Fix CYTOSCAPE-13089
Branch: refs/heads/develop Home: https://github.com/cytoscape/cytoscape-impl Commit: c3705e3db8d721533cf627f61f145646e4ed9af5 https://github.com/cytoscape/cytoscape-impl/commit/c3705e3db8d721533cf627f61f145646e4ed9af5 Author: Yihang Xin <46608109+yiha...@users.noreply.github.com> Date: 2024-02-13 (Tue, 13 Feb 2024) Changed paths: A editor-impl/src/main/java/org/cytoscape/editor/internal/SIFInterpreterEdgeEdit.java Log Message: --- Fix CYTOSCAPE-13089 -- You received this message because you are subscribed to the Google Groups "cytoscape-cvs" group. To unsubscribe from this group and stop receiving emails from it, send an email to cytoscape-cvs+unsubscr...@googlegroups.com. To view this discussion on the web visit https://groups.google.com/d/msgid/cytoscape-cvs/cytoscape/cytoscape-impl/push/refs/heads/develop/d3bd90-c3705e%40github.com.
[cytoscape/cytoscape-impl] d3bd90: Fix CYTOSCAPE-13089
Branch: refs/heads/develop Home: https://github.com/cytoscape/cytoscape-impl Commit: d3bd905d6cfd92f820187fedb0c1a922b27ca1f5 https://github.com/cytoscape/cytoscape-impl/commit/d3bd905d6cfd92f820187fedb0c1a922b27ca1f5 Author: Yihang Xin <46608109+yiha...@users.noreply.github.com> Date: 2024-02-13 (Tue, 13 Feb 2024) Changed paths: M editor-impl/src/main/java/org/cytoscape/editor/internal/SIFInterpreterTask.java Log Message: --- Fix CYTOSCAPE-13089 -- You received this message because you are subscribed to the Google Groups "cytoscape-cvs" group. To unsubscribe from this group and stop receiving emails from it, send an email to cytoscape-cvs+unsubscr...@googlegroups.com. To view this discussion on the web visit https://groups.google.com/d/msgid/cytoscape-cvs/cytoscape/cytoscape-impl/push/refs/heads/develop/4a4881-d3bd90%40github.com.
[cytoscape/cytoscape-impl] 4a4881: Minor tweaks to: size of session panels; borders, ...
Branch: refs/heads/develop Home: https://github.com/cytoscape/cytoscape-impl Commit: 4a4881527835c660be3b2c6f532a68c6b8df1b85 https://github.com/cytoscape/cytoscape-impl/commit/4a4881527835c660be3b2c6f532a68c6b8df1b85 Author: Christian Lopes Date: 2024-02-12 (Mon, 12 Feb 2024) Changed paths: M swing-application-impl/src/main/java/org/cytoscape/internal/view/StarterPanel.java Log Message: --- Minor tweaks to: size of session panels; borders, gradients and preferred size of session lists -- CYTOSCAPE-13129 -- You received this message because you are subscribed to the Google Groups "cytoscape-cvs" group. To unsubscribe from this group and stop receiving emails from it, send an email to cytoscape-cvs+unsubscr...@googlegroups.com. To view this discussion on the web visit https://groups.google.com/d/msgid/cytoscape-cvs/cytoscape/cytoscape-impl/push/refs/heads/develop/d30b26-4a4881%40github.com.
[cytoscape/cytoscape-impl] d3b2af: Adds "py4cytoscape" and "RCy3" to "Help.Automation...
Branch: refs/heads/release/3.10.2 Home: https://github.com/cytoscape/cytoscape-impl Commit: d3b2afbbded887c6c24c2c081057f8aacce0d0a9 https://github.com/cytoscape/cytoscape-impl/commit/d3b2afbbded887c6c24c2c081057f8aacce0d0a9 Author: Christian Lopes Date: 2024-02-08 (Thu, 08 Feb 2024) Changed paths: M swing-application-impl/src/main/java/org/cytoscape/internal/CyActivator.java M swing-application-impl/src/main/java/org/cytoscape/internal/view/StarterPanel.java A swing-application-impl/src/main/java/org/cytoscape/internal/view/help/HelpLinkTaskFactory.java A swing-application-impl/src/main/java/org/cytoscape/internal/view/util/SVGIcon.java A swing-application-impl/src/main/resources/images/python-logo.svg A swing-application-impl/src/main/resources/images/r-logo.svg Log Message: --- Adds "py4cytoscape" and "RCy3" to "Help.Automation" menu. Minor redesign of the Start panel, including the addition of links to py4cytoscape and RCy3. -- CYTOSCAPE-13129 -- You received this message because you are subscribed to the Google Groups "cytoscape-cvs" group. To unsubscribe from this group and stop receiving emails from it, send an email to cytoscape-cvs+unsubscr...@googlegroups.com. To view this discussion on the web visit https://groups.google.com/d/msgid/cytoscape-cvs/cytoscape/cytoscape-impl/push/refs/heads/release/3.10.2/24895b-d3b2af%40github.com.
[cytoscape/cytoscape-impl] 24895b: Possible fix for CYTOSCAPE-13125 We registered th...
Branch: refs/heads/release/3.10.2 Home: https://github.com/cytoscape/cytoscape-impl Commit: 24895b04555744f9dbaa672244e750c47764119a https://github.com/cytoscape/cytoscape-impl/commit/24895b04555744f9dbaa672244e750c47764119a Author: Scooter Morris Date: 2024-02-05 (Mon, 05 Feb 2024) Changed paths: M group-impl/src/main/java/org/cytoscape/group/internal/CyActivator.java M group-impl/src/main/java/org/cytoscape/group/internal/view/NodeChangeListener.java Log Message: --- Possible fix for CYTOSCAPE-13125 We registered the SessionLoaded listener, which clears all of the maps and we added a NetworkViewAboutToBeDestroyed listener to remove the keys from the maps as the view goes away. -- You received this message because you are subscribed to the Google Groups "cytoscape-cvs" group. To unsubscribe from this group and stop receiving emails from it, send an email to cytoscape-cvs+unsubscr...@googlegroups.com. To view this discussion on the web visit https://groups.google.com/d/msgid/cytoscape-cvs/cytoscape/cytoscape-impl/push/refs/heads/release/3.10.2/fa24c1-24895b%40github.com.
[cytoscape/cytoscape-impl] d30b26: Adds "py4cytoscape" and "RCy3" to "Help.Automation...
Branch: refs/heads/develop Home: https://github.com/cytoscape/cytoscape-impl Commit: d30b26c2d630718a37e8425c15854e79b9240045 https://github.com/cytoscape/cytoscape-impl/commit/d30b26c2d630718a37e8425c15854e79b9240045 Author: Christian Lopes Date: 2024-02-06 (Tue, 06 Feb 2024) Changed paths: M swing-application-impl/src/main/java/org/cytoscape/internal/CyActivator.java M swing-application-impl/src/main/java/org/cytoscape/internal/view/StarterPanel.java A swing-application-impl/src/main/java/org/cytoscape/internal/view/help/HelpLinkTaskFactory.java A swing-application-impl/src/main/java/org/cytoscape/internal/view/util/SVGIcon.java A swing-application-impl/src/main/resources/images/python-logo.svg A swing-application-impl/src/main/resources/images/r-logo.svg Log Message: --- Adds "py4cytoscape" and "RCy3" to "Help.Automation" menu. Minor redesign of the Start panel, including the addition of links to py4cytoscape and RCy3. -- CYTOSCAPE-13129 -- You received this message because you are subscribed to the Google Groups "cytoscape-cvs" group. To unsubscribe from this group and stop receiving emails from it, send an email to cytoscape-cvs+unsubscr...@googlegroups.com. To view this discussion on the web visit https://groups.google.com/d/msgid/cytoscape-cvs/cytoscape/cytoscape-impl/push/refs/heads/develop/2a4d84-d30b26%40github.com.
[cytoscape/cytoscape-impl] 2a4d84: Possible fix for CYTOSCAPE-13125 We registered th...
Branch: refs/heads/develop Home: https://github.com/cytoscape/cytoscape-impl Commit: 2a4d8458364d56bbff57068b61e393afacad00ff https://github.com/cytoscape/cytoscape-impl/commit/2a4d8458364d56bbff57068b61e393afacad00ff Author: Scooter Morris Date: 2024-02-01 (Thu, 01 Feb 2024) Changed paths: M group-impl/src/main/java/org/cytoscape/group/internal/CyActivator.java M group-impl/src/main/java/org/cytoscape/group/internal/view/NodeChangeListener.java Log Message: --- Possible fix for CYTOSCAPE-13125 We registered the SessionLoaded listener, which clears all of the maps and we added a NetworkViewAboutToBeDestroyed listener to remove the keys from the maps as the view goes away. -- You received this message because you are subscribed to the Google Groups "cytoscape-cvs" group. To unsubscribe from this group and stop receiving emails from it, send an email to cytoscape-cvs+unsubscr...@googlegroups.com. To view this discussion on the web visit https://groups.google.com/d/msgid/cytoscape-cvs/cytoscape/cytoscape-impl/push/refs/heads/develop/6c7d3a-2a4d84%40github.com.
[cytoscape/cytoscape-impl] 157605: CYTOSCAPE-13113 allow leading wildcard in lucene s...
Branch: refs/heads/release/3.10.2 Home: https://github.com/cytoscape/cytoscape-impl Commit: 1576051b0176e3883786b0d29175d4f16c33a678 https://github.com/cytoscape/cytoscape-impl/commit/1576051b0176e3883786b0d29175d4f16c33a678 Author: Mike Kucera Date: 2024-02-01 (Thu, 01 Feb 2024) Changed paths: M search2-impl/src/main/java/org/cytoscape/search/internal/index/CustomMultiFieldQueryParser.java Log Message: --- CYTOSCAPE-13113 allow leading wildcard in lucene search Commit: 20a25f79cbc810a757e5adffa7f189a48584549e https://github.com/cytoscape/cytoscape-impl/commit/20a25f79cbc810a757e5adffa7f189a48584549e Author: Mike Kucera Date: 2024-02-01 (Thu, 01 Feb 2024) Changed paths: M work-swing-impl/impl/src/main/java/org/cytoscape/work/internal/task/SwingTaskMonitor.java Log Message: --- CYTOSCAPE-13126 Move history.addMessage() off the EDT. Reformat code. Commit: fa24c1f32f31398cfe4fd120e5afd5e0fd3ef03f https://github.com/cytoscape/cytoscape-impl/commit/fa24c1f32f31398cfe4fd120e5afd5e0fd3ef03f Author: Mike Kucera Date: 2024-02-01 (Thu, 01 Feb 2024) Changed paths: M work-swing-impl/impl/src/main/java/org/cytoscape/work/internal/task/TaskHistory.java M work-swing-impl/impl/src/main/java/org/cytoscape/work/internal/view/TaskHistoryWindow.java Log Message: --- CYTOSCAPE-13126 TaskHistory max size. TaskHistoryWindow debounce. Reformat code. Compare: https://github.com/cytoscape/cytoscape-impl/compare/20cf9161147f...fa24c1f32f31 -- You received this message because you are subscribed to the Google Groups "cytoscape-cvs" group. To unsubscribe from this group and stop receiving emails from it, send an email to cytoscape-cvs+unsubscr...@googlegroups.com. To view this discussion on the web visit https://groups.google.com/d/msgid/cytoscape-cvs/cytoscape/cytoscape-impl/push/refs/heads/release/3.10.2/20cf91-fa24c1%40github.com.
[cytoscape/cytoscape-impl] ac8d24: Renames the Properties button to "More Properties"...
Branch: refs/heads/feature/vizmapper-rotated-labels Home: https://github.com/cytoscape/cytoscape-impl Commit: ac8d24597eefbe3d5571749806d81c2c905a8ef7 https://github.com/cytoscape/cytoscape-impl/commit/ac8d24597eefbe3d5571749806d81c2c905a8ef7 Author: Christian Lopes Date: 2024-01-25 (Thu, 25 Jan 2024) Changed paths: M vizmap-gui-impl/src/main/java/org/cytoscape/view/vizmap/gui/internal/view/VisualPropertySheet.java Log Message: --- Renames the Properties button to "More Properties" and changes the tooltips -- CYTOSCAPE-13128 -- You received this message because you are subscribed to the Google Groups "cytoscape-cvs" group. To unsubscribe from this group and stop receiving emails from it, send an email to cytoscape-cvs+unsubscr...@googlegroups.com. To view this discussion on the web visit https://groups.google.com/d/msgid/cytoscape-cvs/cytoscape/cytoscape-impl/push/refs/heads/feature/vizmapper-rotated-labels/8e69e8-ac8d24%40github.com.
[cytoscape/cytoscape-impl] 5111d3: CYTOSCAPE-13126 Move history.addMessage() off the ...
Branch: refs/heads/develop Home: https://github.com/cytoscape/cytoscape-impl Commit: 5111d38d6181757d571dd059b85ba5e2c43f1771 https://github.com/cytoscape/cytoscape-impl/commit/5111d38d6181757d571dd059b85ba5e2c43f1771 Author: Mike Kucera Date: 2024-01-24 (Wed, 24 Jan 2024) Changed paths: M work-swing-impl/impl/src/main/java/org/cytoscape/work/internal/task/SwingTaskMonitor.java Log Message: --- CYTOSCAPE-13126 Move history.addMessage() off the EDT. Reformat code. Commit: 6c7d3ab01863153398662486665b1e9100d2eaa7 https://github.com/cytoscape/cytoscape-impl/commit/6c7d3ab01863153398662486665b1e9100d2eaa7 Author: Mike Kucera Date: 2024-01-24 (Wed, 24 Jan 2024) Changed paths: M work-swing-impl/impl/src/main/java/org/cytoscape/work/internal/task/TaskHistory.java M work-swing-impl/impl/src/main/java/org/cytoscape/work/internal/view/TaskHistoryWindow.java Log Message: --- CYTOSCAPE-13126 TaskHistory max size. TaskHistoryWindow debounce. Reformat code. Compare: https://github.com/cytoscape/cytoscape-impl/compare/aa24ce3c0db9...6c7d3ab01863 -- You received this message because you are subscribed to the Google Groups "cytoscape-cvs" group. To unsubscribe from this group and stop receiving emails from it, send an email to cytoscape-cvs+unsubscr...@googlegroups.com. To view this discussion on the web visit https://groups.google.com/d/msgid/cytoscape-cvs/cytoscape/cytoscape-impl/push/refs/heads/develop/aa24ce-6c7d3a%40github.com.
[cytoscape/cytoscape-impl] 8e69e8: - Labels for the property value columns are now ro...
Branch: refs/heads/feature/vizmapper-rotated-labels Home: https://github.com/cytoscape/cytoscape-impl Commit: 8e69e896b1a7b35e52b0f3fd468cf3175ade2013 https://github.com/cytoscape/cytoscape-impl/commit/8e69e896b1a7b35e52b0f3fd468cf3175ade2013 Author: Christian Lopes Date: 2024-01-23 (Tue, 23 Jan 2024) Changed paths: M vizmap-gui-impl/src/main/java/org/cytoscape/view/vizmap/gui/internal/view/VisualPropertySheet.java Log Message: --- - Labels for the property value columns are now rotated and no longer abbreviated; improved tooltips. - Renames the Properties button to "Show Properties", makes the standard button border visible and moves it to the property name column. -- CYTOSCAPE-13128 -- You received this message because you are subscribed to the Google Groups "cytoscape-cvs" group. To unsubscribe from this group and stop receiving emails from it, send an email to cytoscape-cvs+unsubscr...@googlegroups.com. To view this discussion on the web visit https://groups.google.com/d/msgid/cytoscape-cvs/cytoscape/cytoscape-impl/push/refs/heads/feature/vizmapper-rotated-labels/00-8e69e8%40github.com.
[cytoscape/cytoscape-support] 115963: Fix build error
Branch: refs/heads/develop Home: https://github.com/cytoscape/cytoscape-support Commit: 1159634374f9565d1fe2c02ca3c166c6a343be8b https://github.com/cytoscape/cytoscape-support/commit/1159634374f9565d1fe2c02ca3c166c6a343be8b Author: Mike Kucera Date: 2024-01-21 (Sun, 21 Jan 2024) Changed paths: M archetypes/cytoscape-starter-app/src/main/resources/archetype-resources/pom.xml Log Message: --- Fix build error -- You received this message because you are subscribed to the Google Groups "cytoscape-cvs" group. To unsubscribe from this group and stop receiving emails from it, send an email to cytoscape-cvs+unsubscr...@googlegroups.com. To view this discussion on the web visit https://groups.google.com/d/msgid/cytoscape-cvs/cytoscape/cytoscape-support/push/refs/heads/develop/26d379-115963%40github.com.
[cytoscape/cytoscape-impl] 20cf91: Fixes the icons for edge arrows on the VizMapper: ...
Branch: refs/heads/release/3.10.2 Home: https://github.com/cytoscape/cytoscape-impl Commit: 20cf9161147fb7d3f69d88a685c9be3df953706e https://github.com/cytoscape/cytoscape-impl/commit/20cf9161147fb7d3f69d88a685c9be3df953706e Author: Christian Lopes Date: 2024-01-11 (Thu, 11 Jan 2024) Changed paths: M ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/icon/ArrowIcon.java M ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/icon/VisualPropertyIconFactory.java M vizmap-gui-impl/src/main/java/org/cytoscape/view/vizmap/gui/internal/view/cellrenderer/IconCellRenderer.java Log Message: --- Fixes the icons for edge arrows on the VizMapper: incorrect proportions (e.g. CIRCLE, SQUARE), misalignments (HALF_TOP, HALF_BOTTOM), incorrect edge intersection (ARROWs). -- You received this message because you are subscribed to the Google Groups "cytoscape-cvs" group. To unsubscribe from this group and stop receiving emails from it, send an email to cytoscape-cvs+unsubscr...@googlegroups.com. To view this discussion on the web visit https://groups.google.com/d/msgid/cytoscape-cvs/cytoscape/cytoscape-impl/push/refs/heads/release/3.10.2/b38f58-20cf91%40github.com.
[cytoscape/cytoscape-gui-distribution] ee8dd1: bump diffusion to 1.6.4
Branch: refs/heads/develop Home: https://github.com/cytoscape/cytoscape-gui-distribution Commit: ee8dd131523f1bb353e46cba1c5740748fcdf971 https://github.com/cytoscape/cytoscape-gui-distribution/commit/ee8dd131523f1bb353e46cba1c5740748fcdf971 Author: Chris Churas Date: 2024-01-11 (Thu, 11 Jan 2024) Changed paths: M assembly/pom.xml Log Message: --- bump diffusion to 1.6.4 -- You received this message because you are subscribed to the Google Groups "cytoscape-cvs" group. To unsubscribe from this group and stop receiving emails from it, send an email to cytoscape-cvs+unsubscr...@googlegroups.com. To view this discussion on the web visit https://groups.google.com/d/msgid/cytoscape-cvs/cytoscape/cytoscape-gui-distribution/push/refs/heads/develop/975877-ee8dd1%40github.com.
[cytoscape/cytoscape-impl] b3d52c: Fix formatting
Branch: refs/heads/develop Home: https://github.com/cytoscape/cytoscape-impl Commit: b3d52c5d36ea88152466dcb08fa69eee5fcab99f https://github.com/cytoscape/cytoscape-impl/commit/b3d52c5d36ea88152466dcb08fa69eee5fcab99f Author: Mike Kucera Date: 2024-01-11 (Thu, 11 Jan 2024) Changed paths: M ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/graph/render/stateful/GraphRenderer.java Log Message: --- Fix formatting Commit: aa24ce3c0db96959ad57d67185d5d42d86a117b8 https://github.com/cytoscape/cytoscape-impl/commit/aa24ce3c0db96959ad57d67185d5d42d86a117b8 Author: Mike Kucera Date: 2024-01-11 (Thu, 11 Jan 2024) Changed paths: M ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/impl/canvas/CompositeImageCanvas.java Log Message: --- Fix issue with ding debug panel. Compare: https://github.com/cytoscape/cytoscape-impl/compare/c309504543e3...aa24ce3c0db9 -- You received this message because you are subscribed to the Google Groups "cytoscape-cvs" group. To unsubscribe from this group and stop receiving emails from it, send an email to cytoscape-cvs+unsubscr...@googlegroups.com. To view this discussion on the web visit https://groups.google.com/d/msgid/cytoscape-cvs/cytoscape/cytoscape-impl/push/refs/heads/develop/c30950-aa24ce%40github.com.
[cytoscape/cytoscape-impl]
Branch: refs/heads/bug/edge-arrow-icons Home: https://github.com/cytoscape/cytoscape-impl -- You received this message because you are subscribed to the Google Groups "cytoscape-cvs" group. To unsubscribe from this group and stop receiving emails from it, send an email to cytoscape-cvs+unsubscr...@googlegroups.com. To view this discussion on the web visit https://groups.google.com/d/msgid/cytoscape-cvs/cytoscape/cytoscape-impl/push/refs/heads/bug/edge-arrow-icons/c30950-00%40github.com.
[cytoscape/cytoscape-impl] c30950: Fixes the icons for edge arrows on the VizMapper: ...
Branch: refs/heads/develop Home: https://github.com/cytoscape/cytoscape-impl Commit: c309504543e37ceb2512f34027cec7d33fe4d100 https://github.com/cytoscape/cytoscape-impl/commit/c309504543e37ceb2512f34027cec7d33fe4d100 Author: Christian Lopes Date: 2024-01-09 (Tue, 09 Jan 2024) Changed paths: M ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/icon/ArrowIcon.java M ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/icon/VisualPropertyIconFactory.java M vizmap-gui-impl/src/main/java/org/cytoscape/view/vizmap/gui/internal/view/cellrenderer/IconCellRenderer.java Log Message: --- Fixes the icons for edge arrows on the VizMapper: incorrect proportions (e.g. CIRCLE, SQUARE), misalignments (HALF_TOP, HALF_BOTTOM), incorrect edge intersection (ARROWs). -- You received this message because you are subscribed to the Google Groups "cytoscape-cvs" group. To unsubscribe from this group and stop receiving emails from it, send an email to cytoscape-cvs+unsubscr...@googlegroups.com. To view this discussion on the web visit https://groups.google.com/d/msgid/cytoscape-cvs/cytoscape/cytoscape-impl/push/refs/heads/develop/c48db1-c30950%40github.com.
[cytoscape/cytoscape-gui-distribution] 975877: Bump analyzer version from '4.4.8' to '4.5.0'
Branch: refs/heads/develop Home: https://github.com/cytoscape/cytoscape-gui-distribution Commit: 97587739b92325d7d2f9708f6965861e586731eb https://github.com/cytoscape/cytoscape-gui-distribution/commit/97587739b92325d7d2f9708f6965861e586731eb Author: Yihang Xin <46608109+yiha...@users.noreply.github.com> Date: 2024-01-09 (Tue, 09 Jan 2024) Changed paths: M assembly/pom.xml Log Message: --- Bump analyzer version from '4.4.8' to '4.5.0' -- You received this message because you are subscribed to the Google Groups "cytoscape-cvs" group. To unsubscribe from this group and stop receiving emails from it, send an email to cytoscape-cvs+unsubscr...@googlegroups.com. To view this discussion on the web visit https://groups.google.com/d/msgid/cytoscape-cvs/cytoscape/cytoscape-gui-distribution/push/refs/heads/develop/ee570d-975877%40github.com.
[cytoscape/cytoscape-impl] c30950: Fixes the icons for edge arrows on the VizMapper: ...
Branch: refs/heads/bug/edge-arrow-icons Home: https://github.com/cytoscape/cytoscape-impl Commit: c309504543e37ceb2512f34027cec7d33fe4d100 https://github.com/cytoscape/cytoscape-impl/commit/c309504543e37ceb2512f34027cec7d33fe4d100 Author: Christian Lopes Date: 2024-01-09 (Tue, 09 Jan 2024) Changed paths: M ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/icon/ArrowIcon.java M ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/icon/VisualPropertyIconFactory.java M vizmap-gui-impl/src/main/java/org/cytoscape/view/vizmap/gui/internal/view/cellrenderer/IconCellRenderer.java Log Message: --- Fixes the icons for edge arrows on the VizMapper: incorrect proportions (e.g. CIRCLE, SQUARE), misalignments (HALF_TOP, HALF_BOTTOM), incorrect edge intersection (ARROWs). -- You received this message because you are subscribed to the Google Groups "cytoscape-cvs" group. To unsubscribe from this group and stop receiving emails from it, send an email to cytoscape-cvs+unsubscr...@googlegroups.com. To view this discussion on the web visit https://groups.google.com/d/msgid/cytoscape-cvs/cytoscape/cytoscape-impl/push/refs/heads/bug/edge-arrow-icons/00-c30950%40github.com.
[cytoscape/cytoscape-impl] e17651: CYTOSCAPE-13121 Make (default) more visible in lay...
Branch: refs/heads/release/3.10.2 Home: https://github.com/cytoscape/cytoscape-impl Commit: e17651cff1c7bcbd72648287c0572c43f5f6bd1c https://github.com/cytoscape/cytoscape-impl/commit/e17651cff1c7bcbd72648287c0572c43f5f6bd1c Author: Mike Kucera Date: 2024-01-08 (Mon, 08 Jan 2024) Changed paths: M swing-application-impl/src/main/java/org/cytoscape/internal/layout/ui/LayoutSettingsDialog.java Log Message: --- CYTOSCAPE-13121 Make (default) more visible in layout settings dialog Commit: 6061da09d767623e4c765ac6aee4b4b8603a1c23 https://github.com/cytoscape/cytoscape-impl/commit/6061da09d767623e4c765ac6aee4b4b8603a1c23 Author: Scooter Morris Date: 2024-01-08 (Mon, 08 Jan 2024) Changed paths: M io-impl/impl/src/main/java/org/cytoscape/io/internal/read/gml/GMLParser.java Log Message: --- Modified GMLParser to wrap whitespace around start and end list. Fixes CYTOSCAPE-13107 Commit: c70ea37f4268b3a56d717f472e82627df53b1ad5 https://github.com/cytoscape/cytoscape-impl/commit/c70ea37f4268b3a56d717f472e82627df53b1ad5 Author: Scooter Morris Date: 2024-01-08 (Mon, 08 Jan 2024) Changed paths: M linkout-impl/src/main/resources/linkout.props Log Message: --- OK, adjusted URI format. For some reason, the uniprot web site doesn't load using CyBrowser, so this will only work if you use the system browser. CYTOSCAPE-13104 Commit: b38f5866dbe74419bf16ac6eabfd8325f5c16193 https://github.com/cytoscape/cytoscape-impl/commit/b38f5866dbe74419bf16ac6eabfd8325f5c16193 Author: Scooter Morris Date: 2024-01-08 (Mon, 08 Jan 2024) Changed paths: M linkout-impl/src/main/resources/linkout.props Log Message: --- CYTOSCAPE-13104 -- just removed the gene: to do a more generic search Compare: https://github.com/cytoscape/cytoscape-impl/compare/7e994aefb2e3...b38f5866dbe7 -- You received this message because you are subscribed to the Google Groups "cytoscape-cvs" group. To unsubscribe from this group and stop receiving emails from it, send an email to cytoscape-cvs+unsubscr...@googlegroups.com. To view this discussion on the web visit https://groups.google.com/d/msgid/cytoscape-cvs/cytoscape/cytoscape-impl/push/refs/heads/release/3.10.2/7e994a-b38f58%40github.com.
[cytoscape/cytoscape-impl] 9468ce: Newer maven's require https
Branch: refs/heads/develop Home: https://github.com/cytoscape/cytoscape-impl Commit: 9468ce81234b6c77aa853c6a30e3d01707aa0c8f https://github.com/cytoscape/cytoscape-impl/commit/9468ce81234b6c77aa853c6a30e3d01707aa0c8f Author: Scooter Morris Date: 2024-01-08 (Mon, 08 Jan 2024) Changed paths: M app-impl/pom.xml M application-impl/pom.xml M command-executor-impl/pom.xml M core-task-impl/pom.xml M custom-graphics-internal/pom.xml M cycl-impl/pom.xml M edge-bundler-impl/pom.xml M editor-impl/pom.xml M equations-impl/pom.xml M event-impl/pom.xml M filter-impl/pom.xml M filter2-impl/pom.xml M group-impl/pom.xml M gui-cmdline-parser-impl/pom.xml M headless-application-impl/pom.xml M headless-cmdline-parser-impl/pom.xml M io-impl/pom.xml M jobs-impl/pom.xml M layout-cytoscape-impl/pom.xml M layout-impl/pom.xml M layout-jgraph-impl/pom.xml M layout-prefuse-impl/pom.xml M log-swing-impl/pom.xml M manual-layout-impl/pom.xml M model-impl/pom.xml M presentation-impl/pom.xml M property-impl/pom.xml M search2-impl/pom.xml M swing-application-impl/pom.xml M swing-util-impl/pom.xml M table-browser-impl/pom.xml M table-import-impl/pom.xml M table-presentation-impl/pom.xml M util-impl/pom.xml M viewmodel-impl/pom.xml M vizmap-gui-core-impl/pom.xml M vizmap-impl/pom.xml M webservice-impl/pom.xml M work-headless-impl/pom.xml M work-impl/pom.xml M work-swing-impl/pom.xml Log Message: --- Newer maven's require https Commit: e9d64e067e9f5952b80a335eb480a7b0388d1cfc https://github.com/cytoscape/cytoscape-impl/commit/e9d64e067e9f5952b80a335eb480a7b0388d1cfc Author: Scooter Morris Date: 2024-01-08 (Mon, 08 Jan 2024) Changed paths: M ding-impl/ding-presentation-impl/pom.xml M session-impl/impl/pom.xml Log Message: --- Newer maven's require https Commit: c48db1cfd8361244249d11a3f21cbc3e89680e6e https://github.com/cytoscape/cytoscape-impl/commit/c48db1cfd8361244249d11a3f21cbc3e89680e6e Author: Scooter Morris Date: 2024-01-08 (Mon, 08 Jan 2024) Changed paths: M ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/icon/ArrowIcon.java M ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/icon/VisualPropertyIconFactory.java M linkout-impl/src/main/resources/linkout.props M vizmap-gui-impl/src/main/java/org/cytoscape/view/vizmap/gui/internal/view/cellrenderer/IconCellRenderer.java Log Message: --- Merge branch 'develop' of github.com:cytoscape/cytoscape-impl into develop Compare: https://github.com/cytoscape/cytoscape-impl/compare/c3b29dbb6d1e...c48db1cfd836 -- You received this message because you are subscribed to the Google Groups "cytoscape-cvs" group. To unsubscribe from this group and stop receiving emails from it, send an email to cytoscape-cvs+unsubscr...@googlegroups.com. To view this discussion on the web visit https://groups.google.com/d/msgid/cytoscape-cvs/cytoscape/cytoscape-impl/push/refs/heads/develop/c3b29d-c48db1%40github.com.
[cytoscape/cytoscape-impl] c3b29d: The icons for "OPEN" arrow shapes now look differe...
Branch: refs/heads/develop Home: https://github.com/cytoscape/cytoscape-impl Commit: c3b29dbb6d1edc2bae6ffcdc5a61bb3f46c2e59a https://github.com/cytoscape/cytoscape-impl/commit/c3b29dbb6d1edc2bae6ffcdc5a61bb3f46c2e59a Author: Christian Lopes Date: 2024-01-08 (Mon, 08 Jan 2024) Changed paths: M ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/icon/ArrowIcon.java M ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/icon/VisualPropertyIconFactory.java M vizmap-gui-impl/src/main/java/org/cytoscape/view/vizmap/gui/internal/view/cellrenderer/IconCellRenderer.java Log Message: --- The icons for "OPEN" arrow shapes now look different from their regular counterparts -- CYTOSCAPE-13115 -- You received this message because you are subscribed to the Google Groups "cytoscape-cvs" group. To unsubscribe from this group and stop receiving emails from it, send an email to cytoscape-cvs+unsubscr...@googlegroups.com. To view this discussion on the web visit https://groups.google.com/d/msgid/cytoscape-cvs/cytoscape/cytoscape-impl/push/refs/heads/develop/bc70a4-c3b29d%40github.com.
[cytoscape/cytoscape-impl] bc70a4: CYTOSCAPE-13104 -- just removed the gene: to do a ...
Branch: refs/heads/develop Home: https://github.com/cytoscape/cytoscape-impl Commit: bc70a41186bc2cb2391c4c97e3a52e4c4c6487cb https://github.com/cytoscape/cytoscape-impl/commit/bc70a41186bc2cb2391c4c97e3a52e4c4c6487cb Author: Scooter Morris Date: 2024-01-05 (Fri, 05 Jan 2024) Changed paths: M linkout-impl/src/main/resources/linkout.props Log Message: --- CYTOSCAPE-13104 -- just removed the gene: to do a more generic search -- You received this message because you are subscribed to the Google Groups "cytoscape-cvs" group. To unsubscribe from this group and stop receiving emails from it, send an email to cytoscape-cvs+unsubscr...@googlegroups.com. To view this discussion on the web visit https://groups.google.com/d/msgid/cytoscape-cvs/cytoscape/cytoscape-impl/push/refs/heads/develop/0faadb-bc70a4%40github.com.
[cytoscape/cytoscape-impl] 0faadb: OK, adjusted URI format. For some reason, the uni...
Branch: refs/heads/develop Home: https://github.com/cytoscape/cytoscape-impl Commit: 0faadbb45183c6ffb258b0baeb87c22ee70bb6d9 https://github.com/cytoscape/cytoscape-impl/commit/0faadbb45183c6ffb258b0baeb87c22ee70bb6d9 Author: Scooter Morris Date: 2024-01-05 (Fri, 05 Jan 2024) Changed paths: M linkout-impl/src/main/resources/linkout.props Log Message: --- OK, adjusted URI format. For some reason, the uniprot web site doesn't load using CyBrowser, so this will only work if you use the system browser. CYTOSCAPE-13104 -- You received this message because you are subscribed to the Google Groups "cytoscape-cvs" group. To unsubscribe from this group and stop receiving emails from it, send an email to cytoscape-cvs+unsubscr...@googlegroups.com. To view this discussion on the web visit https://groups.google.com/d/msgid/cytoscape-cvs/cytoscape/cytoscape-impl/push/refs/heads/develop/061e7c-0faadb%40github.com.
[cytoscape/cytoscape-impl] 061e7c: Modified GMLParser to wrap whitespace around start...
Branch: refs/heads/develop Home: https://github.com/cytoscape/cytoscape-impl Commit: 061e7c280cb77f466aba1a4e332271730e043d00 https://github.com/cytoscape/cytoscape-impl/commit/061e7c280cb77f466aba1a4e332271730e043d00 Author: Scooter Morris Date: 2024-01-02 (Tue, 02 Jan 2024) Changed paths: M io-impl/impl/src/main/java/org/cytoscape/io/internal/read/gml/GMLParser.java Log Message: --- Modified GMLParser to wrap whitespace around start and end list. Fixes CYTOSCAPE-13107 -- You received this message because you are subscribed to the Google Groups "cytoscape-cvs" group. To unsubscribe from this group and stop receiving emails from it, send an email to cytoscape-cvs+unsubscr...@googlegroups.com. To view this discussion on the web visit https://groups.google.com/d/msgid/cytoscape-cvs/cytoscape/cytoscape-impl/push/refs/heads/develop/661f31-061e7c%40github.com.
[cytoscape/cytoscape-impl] 661f31: CYTOSCAPE-13113 allow leading wildcard in lucene s...
Branch: refs/heads/develop Home: https://github.com/cytoscape/cytoscape-impl Commit: 661f31728823421234f3cc19da78c77a78e3374c https://github.com/cytoscape/cytoscape-impl/commit/661f31728823421234f3cc19da78c77a78e3374c Author: Mike Kucera Date: 2023-12-23 (Sat, 23 Dec 2023) Changed paths: M search2-impl/src/main/java/org/cytoscape/search/internal/index/CustomMultiFieldQueryParser.java Log Message: --- CYTOSCAPE-13113 allow leading wildcard in lucene search -- You received this message because you are subscribed to the Google Groups "cytoscape-cvs" group. To unsubscribe from this group and stop receiving emails from it, send an email to cytoscape-cvs+unsubscr...@googlegroups.com. To view this discussion on the web visit https://groups.google.com/d/msgid/cytoscape-cvs/cytoscape/cytoscape-impl/push/refs/heads/develop/8667a0-661f31%40github.com.
[cytoscape/cytoscape-impl] 8667a0: CYTOSCAPE-13121 Make (default) more visible in lay...
Branch: refs/heads/develop Home: https://github.com/cytoscape/cytoscape-impl Commit: 8667a05456e482a3fd3b7c552fd1620ad90f79f9 https://github.com/cytoscape/cytoscape-impl/commit/8667a05456e482a3fd3b7c552fd1620ad90f79f9 Author: Mike Kucera Date: 2023-12-23 (Sat, 23 Dec 2023) Changed paths: M swing-application-impl/src/main/java/org/cytoscape/internal/layout/ui/LayoutSettingsDialog.java Log Message: --- CYTOSCAPE-13121 Make (default) more visible in layout settings dialog -- You received this message because you are subscribed to the Google Groups "cytoscape-cvs" group. To unsubscribe from this group and stop receiving emails from it, send an email to cytoscape-cvs+unsubscr...@googlegroups.com. To view this discussion on the web visit https://groups.google.com/d/msgid/cytoscape-cvs/cytoscape/cytoscape-impl/push/refs/heads/develop/d9322a-8667a0%40github.com.
[cytoscape/cytoscape-gui-distribution] ee570d: CYTOSCAPE-13118 Update install4j for karaf 4.3.9
Branch: refs/heads/develop Home: https://github.com/cytoscape/cytoscape-gui-distribution Commit: ee570d05afeb15b454c3627f7b72066275f56d9f https://github.com/cytoscape/cytoscape-gui-distribution/commit/ee570d05afeb15b454c3627f7b72066275f56d9f Author: Mike Kucera Date: 2023-12-23 (Sat, 23 Dec 2023) Changed paths: M packaging/src/main/install4j/Cytoscape.install4j Log Message: --- CYTOSCAPE-13118 Update install4j for karaf 4.3.9 -- You received this message because you are subscribed to the Google Groups "cytoscape-cvs" group. To unsubscribe from this group and stop receiving emails from it, send an email to cytoscape-cvs+unsubscr...@googlegroups.com. To view this discussion on the web visit https://groups.google.com/d/msgid/cytoscape-cvs/cytoscape/cytoscape-gui-distribution/push/refs/heads/develop/c178a9-ee570d%40github.com.
[cytoscape/cytoscape-impl] d9322a: CYTOSCAPE-13120 VizMapperProxy: remove synchronize...
Branch: refs/heads/develop Home: https://github.com/cytoscape/cytoscape-impl Commit: d9322ab073309b0d60d4d04af0fb3a4e2d780bff https://github.com/cytoscape/cytoscape-impl/commit/d9322ab073309b0d60d4d04af0fb3a4e2d780bff Author: Mike Kucera Date: 2023-12-21 (Thu, 21 Dec 2023) Changed paths: M vizmap-gui-impl/src/main/java/org/cytoscape/view/vizmap/gui/internal/model/VizMapperProxy.java Log Message: --- CYTOSCAPE-13120 VizMapperProxy: remove synchronized blocks for loadingSession flag. -- You received this message because you are subscribed to the Google Groups "cytoscape-cvs" group. To unsubscribe from this group and stop receiving emails from it, send an email to cytoscape-cvs+unsubscr...@googlegroups.com. To view this discussion on the web visit https://groups.google.com/d/msgid/cytoscape-cvs/cytoscape/cytoscape-impl/push/refs/heads/develop/e97145-d9322a%40github.com.
[cytoscape/cytoscape-impl] 7e994a: CYTOSCAPE-13120 VizMapperProxy: remove synchronize...
Branch: refs/heads/release/3.10.2 Home: https://github.com/cytoscape/cytoscape-impl Commit: 7e994aefb2e3edb72848507b9cb1727a942fd950 https://github.com/cytoscape/cytoscape-impl/commit/7e994aefb2e3edb72848507b9cb1727a942fd950 Author: Mike Kucera Date: 2023-12-18 (Mon, 18 Dec 2023) Changed paths: M vizmap-gui-impl/src/main/java/org/cytoscape/view/vizmap/gui/internal/model/VizMapperProxy.java Log Message: --- CYTOSCAPE-13120 VizMapperProxy: remove synchronized blocks for loadingSession flag. -- You received this message because you are subscribed to the Google Groups "cytoscape-cvs" group. To unsubscribe from this group and stop receiving emails from it, send an email to cytoscape-cvs+unsubscr...@googlegroups.com. To view this discussion on the web visit https://groups.google.com/d/msgid/cytoscape-cvs/cytoscape/cytoscape-impl/push/refs/heads/release/3.10.2/149de0-7e994a%40github.com.
[cytoscape/cytoscape-impl] 80065b: CYTOSCAPE-13117 Increase table import preview rows...
Branch: refs/heads/release/3.10.2 Home: https://github.com/cytoscape/cytoscape-impl Commit: 80065bd4c7d3cf6fdf5b1977e5d3aea056e347c0 https://github.com/cytoscape/cytoscape-impl/commit/80065bd4c7d3cf6fdf5b1977e5d3aea056e347c0 Author: Mike Kucera Date: 2023-12-18 (Mon, 18 Dec 2023) Changed paths: M table-import-impl/src/main/java/org/cytoscape/tableimport/internal/ui/PreviewTablePanel.java Log Message: --- CYTOSCAPE-13117 Increase table import preview rows to 500 Commit: 149de0e9a70fd5bef03207eb22bd2aaf7c6e4df3 https://github.com/cytoscape/cytoscape-impl/commit/149de0e9a70fd5bef03207eb22bd2aaf7c6e4df3 Author: Mike Kucera Date: 2023-12-18 (Mon, 18 Dec 2023) Changed paths: M table-import-impl/src/main/java/org/cytoscape/tableimport/internal/reader/AbstractLineParser.java Log Message: --- CYTOSCAPE-13117 Log creation of error equation Compare: https://github.com/cytoscape/cytoscape-impl/compare/3d89fe0d3208...149de0e9a70f -- You received this message because you are subscribed to the Google Groups "cytoscape-cvs" group. To unsubscribe from this group and stop receiving emails from it, send an email to cytoscape-cvs+unsubscr...@googlegroups.com. To view this discussion on the web visit https://groups.google.com/d/msgid/cytoscape-cvs/cytoscape/cytoscape-impl/push/refs/heads/release/3.10.2/3d89fe-149de0%40github.com.
[cytoscape/cytoscape-impl] a905b1: CYTOSCAPE-13117 Increase table import preview rows...
Branch: refs/heads/develop Home: https://github.com/cytoscape/cytoscape-impl Commit: a905b11a832452218372359902122f0112aa2362 https://github.com/cytoscape/cytoscape-impl/commit/a905b11a832452218372359902122f0112aa2362 Author: Mike Kucera Date: 2023-12-16 (Sat, 16 Dec 2023) Changed paths: M table-import-impl/src/main/java/org/cytoscape/tableimport/internal/ui/PreviewTablePanel.java Log Message: --- CYTOSCAPE-13117 Increase table import preview rows to 500 Commit: e97145cddb11ed8dd380f688da5889d7d7feb491 https://github.com/cytoscape/cytoscape-impl/commit/e97145cddb11ed8dd380f688da5889d7d7feb491 Author: Mike Kucera Date: 2023-12-16 (Sat, 16 Dec 2023) Changed paths: M table-import-impl/src/main/java/org/cytoscape/tableimport/internal/reader/AbstractLineParser.java Log Message: --- CYTOSCAPE-13117 Log creation of error equation Compare: https://github.com/cytoscape/cytoscape-impl/compare/cb2054d70edf...e97145cddb11 -- You received this message because you are subscribed to the Google Groups "cytoscape-cvs" group. To unsubscribe from this group and stop receiving emails from it, send an email to cytoscape-cvs+unsubscr...@googlegroups.com. To view this discussion on the web visit https://groups.google.com/d/msgid/cytoscape-cvs/cytoscape/cytoscape-impl/push/refs/heads/develop/cb2054-e97145%40github.com.
[cytoscape/cytoscape-impl] 3d89fe: CYTOSCAPE-13079 Fix NPE from Label Position discre...
Branch: refs/heads/release/3.10.2 Home: https://github.com/cytoscape/cytoscape-impl Commit: 3d89fe0d32086a72bdda42e50244dbffdf9ee727 https://github.com/cytoscape/cytoscape-impl/commit/3d89fe0d32086a72bdda42e50244dbffdf9ee727 Author: Mike Kucera Date: 2023-12-12 (Tue, 12 Dec 2023) Changed paths: M ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/ObjectPlacerGraphic.java M ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/ObjectPositionCellRenderer.java M ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/icon/ObjectPositionIcon.java M ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/impl/editor/EdgeBendCellRenderer.java Log Message: --- CYTOSCAPE-13079 Fix NPE from Label Position discreet mapping icon. -- You received this message because you are subscribed to the Google Groups "cytoscape-cvs" group. To unsubscribe from this group and stop receiving emails from it, send an email to cytoscape-cvs+unsubscr...@googlegroups.com. To view this discussion on the web visit https://groups.google.com/d/msgid/cytoscape-cvs/cytoscape/cytoscape-impl/push/refs/heads/release/3.10.2/e933c9-3d89fe%40github.com.
[cytoscape/cytoscape-impl] 465541: Merge pull request #49 from mesvam/patch-1
Branch: refs/heads/release/3.10.2 Home: https://github.com/cytoscape/cytoscape-impl Commit: 46554154f44988de296b164da52b70bd9d52d900 https://github.com/cytoscape/cytoscape-impl/commit/46554154f44988de296b164da52b70bd9d52d900 Author: Scooter Morris Date: 2023-12-11 (Mon, 11 Dec 2023) Changed paths: M layout-cytoscape-impl/src/main/java/csapps/layout/algorithms/bioLayout/BioLayoutFRAlgorithmTask.java Log Message: --- Merge pull request #49 from mesvam/patch-1 Fix wrong attractive force in Edge-weighted Force directed layout Commit: 247c5893e28b82881ecce146fe2d72880f13d45e https://github.com/cytoscape/cytoscape-impl/commit/247c5893e28b82881ecce146fe2d72880f13d45e Author: yihangx Date: 2023-12-11 (Mon, 11 Dec 2023) Changed paths: M app-impl/src/main/java/org/cytoscape/app/internal/task/AppManagerTask.java Log Message: --- Fixed CYTOSCAPE-13103 Commit: 1eafa1379cc6f7ed304732fed04cfd45f826ed42 https://github.com/cytoscape/cytoscape-impl/commit/1eafa1379cc6f7ed304732fed04cfd45f826ed42 Author: yihangx Date: 2023-12-11 (Mon, 11 Dec 2023) Changed paths: M app-impl/src/main/resources/AppManager/AppManager.html Log Message: --- Merge branch 'develop' of github.com:cytoscape/cytoscape-impl into develop Commit: 7f4a26a1fb1711963474ff763ccdb110999014ac https://github.com/cytoscape/cytoscape-impl/commit/7f4a26a1fb1711963474ff763ccdb110999014ac Author: yihangx Date: 2023-12-11 (Mon, 11 Dec 2023) Changed paths: M app-impl/src/main/java/org/cytoscape/app/internal/action/UpdateNotificationAction.java Log Message: --- Fixed CYTOSCAPE-13103 Commit: fdfd2933e7bba79111e6d34cc3cdab7faee3e0ed https://github.com/cytoscape/cytoscape-impl/commit/fdfd2933e7bba79111e6d34cc3cdab7faee3e0ed Author: Scooter Morris Date: 2023-12-11 (Mon, 11 Dec 2023) Changed paths: M manual-layout-impl/src/main/java/org/cytoscape/view/manual/internal/CyActivator.java A manual-layout-impl/src/main/java/org/cytoscape/view/manual/internal/tasks/RotateTask.java A manual-layout-impl/src/main/java/org/cytoscape/view/manual/internal/tasks/RotateTaskFactory.java A manual-layout-impl/src/main/java/org/cytoscape/view/manual/internal/tasks/ScaleTask.java A manual-layout-impl/src/main/java/org/cytoscape/view/manual/internal/tasks/ScaleTaskFactory.java Log Message: --- Implementation of commands for rotate and scale. CYTOSCAPE-13105 Commit: 5584232a097472cf3f3d629140accff222c55bb4 https://github.com/cytoscape/cytoscape-impl/commit/5584232a097472cf3f3d629140accff222c55bb4 Author: Scooter Morris Date: 2023-12-11 (Mon, 11 Dec 2023) Changed paths: M manual-layout-impl/src/main/java/org/cytoscape/view/manual/internal/tasks/ScaleTask.java Log Message: --- Don't use pow to adjust the scale -- just pass the value along directly. CYTOSCAPE-13105 Commit: 4dcbedb171b4142e5e253deeb3a4e57dc315f17b https://github.com/cytoscape/cytoscape-impl/commit/4dcbedb171b4142e5e253deeb3a4e57dc315f17b Author: Mike Kucera Date: 2023-12-11 (Mon, 11 Dec 2023) Changed paths: M custom-graphics-internal/src/main/java/org/cytoscape/cg/internal/charts/AbstractChart.java Log Message: --- CYTOSCAPE-13111 Avoid NPE from chart when column contains error equation Commit: 2a91f480e157e530f938f389382e7cc5ffa93173 https://github.com/cytoscape/cytoscape-impl/commit/2a91f480e157e530f938f389382e7cc5ffa93173 Author: Christian Lopes Date: 2023-12-11 (Mon, 11 Dec 2023) Changed paths: M model-impl/impl/src/main/java/org/cytoscape/model/internal/CyNetworkTableManagerImpl.java M session-impl/src/main/java/org/cytoscape/session/internal/CySessionManagerImpl.java Log Message: --- Disposes unregistered networks (that have the SESSION_FILE SavePolicy) when closing a session -- CYTOSCAPE-13112 Commit: 6482b4677d5f6fd3cf38699bfa74d0f4933fa205 https://github.com/cytoscape/cytoscape-impl/commit/6482b4677d5f6fd3cf38699bfa74d0f4933fa205 Author: Scooter Morris Date: 2023-12-11 (Mon, 11 Dec 2023) Changed paths: M vizmap-gui-impl/src/main/java/org/cytoscape/view/vizmap/gui/internal/view/VizMapperMediator.java Log Message: --- Attempted fix for CSD-1012 -- make sure to select the proper property sheet before we createa ll of the visual property shett items Commit: 00281bd6cfa42c32551aecbb8cdaa7be8659f195 https://github.com/cytoscape/cytoscape-impl/commit/00281bd6cfa42c32551aecbb8cdaa7be8659f195 Author: Scooter Morris Date: 2023-12-11 (Mon, 11 Dec 2023) Changed paths: M io-impl/impl/src/main/java/org/cytoscape/io/internal/write/graphics/SVGWriter.java Log Message: --- Partial fix for CSD-999. The SVG problem was caused by writing the date in the line in 16-bit Unicode. To avoid that, we simply set
[cytoscape/cytoscape-impl] cb2054: CYTOSCAPE-13116 Increase max edge anchors from 64 ...
Branch: refs/heads/develop Home: https://github.com/cytoscape/cytoscape-impl Commit: cb2054d70edf3329c05072e116382b2ddb3cd4ff https://github.com/cytoscape/cytoscape-impl/commit/cb2054d70edf3329c05072e116382b2ddb3cd4ff Author: Mike Kucera Date: 2023-12-11 (Mon, 11 Dec 2023) Changed paths: M ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/graph/render/immed/GraphGraphics.java Log Message: --- CYTOSCAPE-13116 Increase max edge anchors from 64 to 256. -- You received this message because you are subscribed to the Google Groups "cytoscape-cvs" group. To unsubscribe from this group and stop receiving emails from it, send an email to cytoscape-cvs+unsubscr...@googlegroups.com. To view this discussion on the web visit https://groups.google.com/d/msgid/cytoscape-cvs/cytoscape/cytoscape-impl/push/refs/heads/develop/fdd53f-cb2054%40github.com.
[cytoscape/cytoscape-parent] 6c8ed2: Set version to 3.10.2
Branch: refs/heads/release/3.10.2 Home: https://github.com/cytoscape/cytoscape-parent Commit: 6c8ed2ca09390de247c6962c5b4ec26f9017a249 https://github.com/cytoscape/cytoscape-parent/commit/6c8ed2ca09390de247c6962c5b4ec26f9017a249 Author: Mike Kucera Date: 2023-12-08 (Fri, 08 Dec 2023) Changed paths: M pom.xml Log Message: --- Set version to 3.10.2 -- You received this message because you are subscribed to the Google Groups "cytoscape-cvs" group. To unsubscribe from this group and stop receiving emails from it, send an email to cytoscape-cvs+unsubscr...@googlegroups.com. To view this discussion on the web visit https://groups.google.com/d/msgid/cytoscape-cvs/cytoscape/cytoscape-parent/push/refs/heads/release/3.10.2/7fe976-6c8ed2%40github.com.
[cytoscape/cytoscape-parent]
Branch: refs/heads/release/3.10.2 Home: https://github.com/cytoscape/cytoscape-parent -- You received this message because you are subscribed to the Google Groups "cytoscape-cvs" group. To unsubscribe from this group and stop receiving emails from it, send an email to cytoscape-cvs+unsubscr...@googlegroups.com. To view this discussion on the web visit https://groups.google.com/d/msgid/cytoscape-cvs/cytoscape/cytoscape-parent/push/refs/heads/release/3.10.2/00-7fe976%40github.com.
[cytoscape/cytoscape-parent]
Branch: refs/heads/release/3.10.2 Home: https://github.com/cytoscape/cytoscape-parent -- You received this message because you are subscribed to the Google Groups "cytoscape-cvs" group. To unsubscribe from this group and stop receiving emails from it, send an email to cytoscape-cvs+unsubscr...@googlegroups.com. To view this discussion on the web visit https://groups.google.com/d/msgid/cytoscape-cvs/cytoscape/cytoscape-parent/push/refs/heads/release/3.10.2/8f934a-00%40github.com.
[cytoscape/cytoscape-gui-distribution]
Branch: refs/heads/dependabot/maven/integration-test/ch.qos.logback-logback-classic-1.3.12 Home: https://github.com/cytoscape/cytoscape-gui-distribution -- You received this message because you are subscribed to the Google Groups "cytoscape-cvs" group. To unsubscribe from this group and stop receiving emails from it, send an email to cytoscape-cvs+unsubscr...@googlegroups.com. To view this discussion on the web visit https://groups.google.com/d/msgid/cytoscape-cvs/cytoscape/cytoscape-gui-distribution/push/refs/heads/dependabot/maven/integration-test/ch.qos.logback-logback-classic-1.3.12/9cb583-00%40github.com.
[cytoscape/cytoscape-gui-distribution] 2f05ae: Bump ch.qos.logback:logback-classic in /integratio...
Branch: refs/heads/dependabot/maven/integration-test/ch.qos.logback-logback-classic-1.2.13 Home: https://github.com/cytoscape/cytoscape-gui-distribution Commit: 2f05aeaf3b1ea756e74e62de1ef61e87de3ec81d https://github.com/cytoscape/cytoscape-gui-distribution/commit/2f05aeaf3b1ea756e74e62de1ef61e87de3ec81d Author: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> Date: 2023-12-05 (Tue, 05 Dec 2023) Changed paths: M integration-test/pom.xml Log Message: --- Bump ch.qos.logback:logback-classic in /integration-test Bumps [ch.qos.logback:logback-classic](https://github.com/qos-ch/logback) from 0.9.29 to 1.2.13. - [Commits](https://github.com/qos-ch/logback/compare/v_0.9.29...v_1.2.13) --- updated-dependencies: - dependency-name: ch.qos.logback:logback-classic dependency-type: direct:development ... Signed-off-by: dependabot[bot] -- You received this message because you are subscribed to the Google Groups "cytoscape-cvs" group. To unsubscribe from this group and stop receiving emails from it, send an email to cytoscape-cvs+unsubscr...@googlegroups.com. To view this discussion on the web visit https://groups.google.com/d/msgid/cytoscape-cvs/cytoscape/cytoscape-gui-distribution/push/refs/heads/dependabot/maven/integration-test/ch.qos.logback-logback-classic-1.2.13/00-2f05ae%40github.com.
[cytoscape/cytoscape-gui-distribution]
Branch: refs/heads/dependabot/maven/integration-test/ch.qos.logback-logback-core-1.3.12 Home: https://github.com/cytoscape/cytoscape-gui-distribution -- You received this message because you are subscribed to the Google Groups "cytoscape-cvs" group. To unsubscribe from this group and stop receiving emails from it, send an email to cytoscape-cvs+unsubscr...@googlegroups.com. To view this discussion on the web visit https://groups.google.com/d/msgid/cytoscape-cvs/cytoscape/cytoscape-gui-distribution/push/refs/heads/dependabot/maven/integration-test/ch.qos.logback-logback-core-1.3.12/979c9e-00%40github.com.
[cytoscape/cytoscape-gui-distribution] aaed9e: Bump ch.qos.logback:logback-core in /integration-test
Branch: refs/heads/dependabot/maven/integration-test/ch.qos.logback-logback-core-1.2.13 Home: https://github.com/cytoscape/cytoscape-gui-distribution Commit: aaed9e5c564958f378e18b3167cb65b9224456ac https://github.com/cytoscape/cytoscape-gui-distribution/commit/aaed9e5c564958f378e18b3167cb65b9224456ac Author: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> Date: 2023-12-05 (Tue, 05 Dec 2023) Changed paths: M integration-test/pom.xml Log Message: --- Bump ch.qos.logback:logback-core in /integration-test Bumps [ch.qos.logback:logback-core](https://github.com/qos-ch/logback) from 0.9.29 to 1.2.13. - [Commits](https://github.com/qos-ch/logback/compare/v_0.9.29...v_1.2.13) --- updated-dependencies: - dependency-name: ch.qos.logback:logback-core dependency-type: direct:development ... Signed-off-by: dependabot[bot] -- You received this message because you are subscribed to the Google Groups "cytoscape-cvs" group. To unsubscribe from this group and stop receiving emails from it, send an email to cytoscape-cvs+unsubscr...@googlegroups.com. To view this discussion on the web visit https://groups.google.com/d/msgid/cytoscape-cvs/cytoscape/cytoscape-gui-distribution/push/refs/heads/dependabot/maven/integration-test/ch.qos.logback-logback-core-1.2.13/00-aaed9e%40github.com.
[cytoscape/cytoscape-support] 58de18: Set version to 3.10.2
Branch: refs/heads/release/3.10.2 Home: https://github.com/cytoscape/cytoscape-support Commit: 58de18bcb73ff3190092d592ebad1108ff343734 https://github.com/cytoscape/cytoscape-support/commit/58de18bcb73ff3190092d592ebad1108ff343734 Author: Mike Kucera Date: 2023-12-02 (Sat, 02 Dec 2023) Changed paths: M archetypes/api-provider-app/pom.xml M archetypes/api-provider-app/src/main/resources/archetype-resources/pom.xml M archetypes/cyaction-app/pom.xml M archetypes/cyaction-app/src/main/resources/archetype-resources/pom.xml M archetypes/cytoscape-starter-app/pom.xml M archetypes/meta-app/pom.xml M archetypes/meta-app/src/main/resources/archetype-resources/pom.xml M archetypes/pom.xml M archetypes/task-app/pom.xml M archetypes/task-app/src/main/resources/archetype-resources/pom.xml M cy-commons-cli/pom.xml M integration-test-support/pom.xml M launch-framework/cmdline/pom.xml M launch-framework/launcher/pom.xml M launch-framework/pom.xml M launch-framework/startlevel-assembly/pom.xml M pom.xml M task-testing-impl/pom.xml Log Message: --- Set version to 3.10.2 -- You received this message because you are subscribed to the Google Groups "cytoscape-cvs" group. To unsubscribe from this group and stop receiving emails from it, send an email to cytoscape-cvs+unsubscr...@googlegroups.com. To view this discussion on the web visit https://groups.google.com/d/msgid/cytoscape-cvs/cytoscape/cytoscape-support/push/refs/heads/release/3.10.2/00-58de18%40github.com.
[cytoscape/cytoscape-parent] 8f934a: Set version to 3.10.2
Branch: refs/heads/release/3.10.2 Home: https://github.com/cytoscape/cytoscape-parent Commit: 8f934a900156f3767b19223ee3c816807dc668bf https://github.com/cytoscape/cytoscape-parent/commit/8f934a900156f3767b19223ee3c816807dc668bf Author: Mike Kucera Date: 2023-12-02 (Sat, 02 Dec 2023) Changed paths: M pom.xml Log Message: --- Set version to 3.10.2 -- You received this message because you are subscribed to the Google Groups "cytoscape-cvs" group. To unsubscribe from this group and stop receiving emails from it, send an email to cytoscape-cvs+unsubscr...@googlegroups.com. To view this discussion on the web visit https://groups.google.com/d/msgid/cytoscape-cvs/cytoscape/cytoscape-parent/push/refs/heads/release/3.10.2/00-8f934a%40github.com.
[cytoscape/cytoscape-impl] f489b3: Set version to 3.10.2
Branch: refs/heads/release/3.10.2 Home: https://github.com/cytoscape/cytoscape-impl Commit: f489b30127c9bd696e004aedd08af8e0851bb3ec https://github.com/cytoscape/cytoscape-impl/commit/f489b30127c9bd696e004aedd08af8e0851bb3ec Author: Mike Kucera Date: 2023-12-02 (Sat, 02 Dec 2023) Changed paths: M app-impl/pom.xml M application-impl/pom.xml M command-executor-impl/pom.xml M core-task-impl/pom.xml M custom-graphics-internal/pom.xml M cycl-impl/pom.xml M datasource-impl/pom.xml M ding-impl/ding-presentation-impl/pom.xml M ding-impl/performance-debug/pom.xml M ding-impl/pom.xml M edge-bundler-impl/pom.xml M editor-impl/pom.xml M equations-functions-impl/pom.xml M equations-impl/pom.xml M event-impl/impl/pom.xml M event-impl/it/pom.xml M event-impl/pom.xml M filter-impl/pom.xml M filter2-impl/pom.xml M graphml-impl/pom.xml M group-impl/pom.xml M gui-cmdline-parser-impl/pom.xml M headless-application-impl/pom.xml M headless-cmdline-parser-impl/pom.xml M io-impl/impl/pom.xml M io-impl/performance/pom.xml M io-impl/pom.xml M jobs-impl/pom.xml M layout-cytoscape-impl/pom.xml M layout-impl/pom.xml M layout-jgraph-impl/pom.xml M layout-prefuse-impl/pom.xml M linkout-impl/pom.xml M log-swing-impl/pom.xml M manual-layout-impl/pom.xml M model-impl/impl/pom.xml M model-impl/it/pom.xml M model-impl/performance-debug/pom.xml M model-impl/performance/pom.xml M model-impl/pom.xml M model-impl/table-performance-debug/pom.xml M pom.xml M presentation-impl/pom.xml M property-impl/pom.xml M search2-impl/pom.xml M session-impl/impl/pom.xml M session-impl/integration-test/pom.xml M session-impl/pom.xml M swing-application-impl/pom.xml M swing-util-impl/pom.xml M table-browser-impl/pom.xml M table-import-impl/pom.xml M table-presentation-impl/pom.xml M util-impl/pom.xml M viewmodel-impl/impl/pom.xml M viewmodel-impl/it/pom.xml M viewmodel-impl/pom.xml M vizmap-gui-core-impl/pom.xml M vizmap-gui-impl/pom.xml M vizmap-impl/impl/pom.xml M vizmap-impl/it/pom.xml M vizmap-impl/pom.xml M webservice-impl/pom.xml M work-headless-impl/pom.xml M work-impl/pom.xml M work-swing-impl/impl/pom.xml M work-swing-impl/it/pom.xml M work-swing-impl/pom.xml Log Message: --- Set version to 3.10.2 -- You received this message because you are subscribed to the Google Groups "cytoscape-cvs" group. To unsubscribe from this group and stop receiving emails from it, send an email to cytoscape-cvs+unsubscr...@googlegroups.com. To view this discussion on the web visit https://groups.google.com/d/msgid/cytoscape-cvs/cytoscape/cytoscape-impl/push/refs/heads/release/3.10.2/00-f489b3%40github.com.
[cytoscape/cytoscape-gui-distribution] 8cd5de: Set version to 3.10.2
Branch: refs/heads/release/3.10.2 Home: https://github.com/cytoscape/cytoscape-gui-distribution Commit: 8cd5de85080a10e690cd8235c835b9fb334ef635 https://github.com/cytoscape/cytoscape-gui-distribution/commit/8cd5de85080a10e690cd8235c835b9fb334ef635 Author: Mike Kucera Date: 2023-12-02 (Sat, 02 Dec 2023) Changed paths: M application-metadata-impl/pom.xml M assembly/pom.xml M assembly/src/main/bin/cytoscape.bat M assembly/src/main/bin/cytoscape.sh M branding/pom.xml M cmdline-impl/pom.xml M diagnostics/pom.xml M features/pom.xml M integration-test/pom.xml M launcher/pom.xml M packaging/pom.xml M pom.xml M splash-launcher/pom.xml M splash-updater-impl/pom.xml M third-party/pom.xml Log Message: --- Set version to 3.10.2 -- You received this message because you are subscribed to the Google Groups "cytoscape-cvs" group. To unsubscribe from this group and stop receiving emails from it, send an email to cytoscape-cvs+unsubscr...@googlegroups.com. To view this discussion on the web visit https://groups.google.com/d/msgid/cytoscape-cvs/cytoscape/cytoscape-gui-distribution/push/refs/heads/release/3.10.2/00-8cd5de%40github.com.
[cytoscape/cytoscape] 358a57: Set version to 3.10.2
Branch: refs/heads/release/3.10.2 Home: https://github.com/cytoscape/cytoscape Commit: 358a5774f3bef525d789501adc96110def107167 https://github.com/cytoscape/cytoscape/commit/358a5774f3bef525d789501adc96110def107167 Author: Mike Kucera Date: 2023-12-02 (Sat, 02 Dec 2023) Changed paths: M pom.xml Log Message: --- Set version to 3.10.2 -- You received this message because you are subscribed to the Google Groups "cytoscape-cvs" group. To unsubscribe from this group and stop receiving emails from it, send an email to cytoscape-cvs+unsubscr...@googlegroups.com. To view this discussion on the web visit https://groups.google.com/d/msgid/cytoscape-cvs/cytoscape/cytoscape/push/refs/heads/release/3.10.2/00-358a57%40github.com.
[cytoscape/cytoscape-app-template] b1c3b6: Set version to 3.10.2
Branch: refs/heads/release/3.10.2 Home: https://github.com/cytoscape/cytoscape-app-template Commit: b1c3b650bc698778171745493aeda8ad8e9e4223 https://github.com/cytoscape/cytoscape-app-template/commit/b1c3b650bc698778171745493aeda8ad8e9e4223 Author: Mike Kucera Date: 2023-12-02 (Sat, 02 Dec 2023) Changed paths: M pom.xml Log Message: --- Set version to 3.10.2 -- You received this message because you are subscribed to the Google Groups "cytoscape-cvs" group. To unsubscribe from this group and stop receiving emails from it, send an email to cytoscape-cvs+unsubscr...@googlegroups.com. To view this discussion on the web visit https://groups.google.com/d/msgid/cytoscape-cvs/cytoscape/cytoscape-app-template/push/refs/heads/release/3.10.2/00-b1c3b6%40github.com.
[cytoscape/cytoscape-api] 82c688: Set version to 3.10.2
Branch: refs/heads/release/3.10.2 Home: https://github.com/cytoscape/cytoscape-api Commit: 82c688cf7b928d6fd6d27abed7013ab5c2cae5b2 https://github.com/cytoscape/cytoscape-api/commit/82c688cf7b928d6fd6d27abed7013ab5c2cae5b2 Author: Mike Kucera Date: 2023-12-02 (Sat, 02 Dec 2023) Changed paths: M api-bundle/pom.xml M app-api/pom.xml M application-api/pom.xml M ci-api/pom.xml M command-executor-api/pom.xml M core-task-api/pom.xml M cycl-api/pom.xml M datasource-api/pom.xml M equations-api/pom.xml M event-api/pom.xml M filter-api/pom.xml M group-api/pom.xml M io-api/pom.xml M jobs-api/pom.xml M layout-api/pom.xml M model-api/pom.xml M pom.xml M presentation-api/pom.xml M property-api/pom.xml M service-api/pom.xml M session-api/pom.xml M swing-app-api/pom.xml M swing-application-api/pom.xml M swing-util-api/pom.xml M taglets/pom.xml M util-api/pom.xml M viewmodel-api/pom.xml M vizmap-api/pom.xml M vizmap-gui-api/pom.xml M webservice-api/pom.xml M webservice-swing-api/pom.xml M work-api/pom.xml M work-swing-api/pom.xml Log Message: --- Set version to 3.10.2 -- You received this message because you are subscribed to the Google Groups "cytoscape-cvs" group. To unsubscribe from this group and stop receiving emails from it, send an email to cytoscape-cvs+unsubscr...@googlegroups.com. To view this discussion on the web visit https://groups.google.com/d/msgid/cytoscape-cvs/cytoscape/cytoscape-api/push/refs/heads/release/3.10.2/00-82c688%40github.com.
[cytoscape/cytoscape-gui-distribution] c178a9: Added new sample session
Branch: refs/heads/develop Home: https://github.com/cytoscape/cytoscape-gui-distribution Commit: c178a9090d90a8f7c348a50cfb8cfaaa496ee1df https://github.com/cytoscape/cytoscape-gui-distribution/commit/c178a9090d90a8f7c348a50cfb8cfaaa496ee1df Author: Scooter Morris Date: 2023-11-30 (Thu, 30 Nov 2023) Changed paths: A assembly/src/main/resources/sampleData/sessions/The_Yeast_Interactome.cys Log Message: --- Added new sample session -- You received this message because you are subscribed to the Google Groups "cytoscape-cvs" group. To unsubscribe from this group and stop receiving emails from it, send an email to cytoscape-cvs+unsubscr...@googlegroups.com. To view this discussion on the web visit https://groups.google.com/d/msgid/cytoscape-cvs/cytoscape/cytoscape-gui-distribution/push/refs/heads/develop/e40af6-c178a9%40github.com.
[cytoscape/cytoscape-gui-distribution]
Branch: refs/heads/dependabot/maven/integration-test/ch.qos.logback-logback-core-1.2.9 Home: https://github.com/cytoscape/cytoscape-gui-distribution -- You received this message because you are subscribed to the Google Groups "cytoscape-cvs" group. To unsubscribe from this group and stop receiving emails from it, send an email to cytoscape-cvs+unsubscr...@googlegroups.com. To view this discussion on the web visit https://groups.google.com/d/msgid/cytoscape-cvs/cytoscape/cytoscape-gui-distribution/push/refs/heads/dependabot/maven/integration-test/ch.qos.logback-logback-core-1.2.9/405ff2-00%40github.com.
[cytoscape/cytoscape-gui-distribution] 979c9e: Bump ch.qos.logback:logback-core in /integration-test
Branch: refs/heads/dependabot/maven/integration-test/ch.qos.logback-logback-core-1.3.12 Home: https://github.com/cytoscape/cytoscape-gui-distribution Commit: 979c9e534383c79b075d8424769e144e9e300b20 https://github.com/cytoscape/cytoscape-gui-distribution/commit/979c9e534383c79b075d8424769e144e9e300b20 Author: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> Date: 2023-11-29 (Wed, 29 Nov 2023) Changed paths: M integration-test/pom.xml Log Message: --- Bump ch.qos.logback:logback-core in /integration-test Bumps [ch.qos.logback:logback-core](https://github.com/qos-ch/logback) from 0.9.29 to 1.3.12. - [Commits](https://github.com/qos-ch/logback/compare/v_0.9.29...v_1.3.12) --- updated-dependencies: - dependency-name: ch.qos.logback:logback-core dependency-type: direct:development ... Signed-off-by: dependabot[bot] -- You received this message because you are subscribed to the Google Groups "cytoscape-cvs" group. To unsubscribe from this group and stop receiving emails from it, send an email to cytoscape-cvs+unsubscr...@googlegroups.com. To view this discussion on the web visit https://groups.google.com/d/msgid/cytoscape-cvs/cytoscape/cytoscape-gui-distribution/push/refs/heads/dependabot/maven/integration-test/ch.qos.logback-logback-core-1.3.12/00-979c9e%40github.com.
[cytoscape/cytoscape-gui-distribution]
Branch: refs/heads/dependabot/maven/integration-test/ch.qos.logback-logback-classic-1.2.0 Home: https://github.com/cytoscape/cytoscape-gui-distribution -- You received this message because you are subscribed to the Google Groups "cytoscape-cvs" group. To unsubscribe from this group and stop receiving emails from it, send an email to cytoscape-cvs+unsubscr...@googlegroups.com. To view this discussion on the web visit https://groups.google.com/d/msgid/cytoscape-cvs/cytoscape/cytoscape-gui-distribution/push/refs/heads/dependabot/maven/integration-test/ch.qos.logback-logback-classic-1.2.0/e8d493-00%40github.com.
[cytoscape/cytoscape-gui-distribution] 9cb583: Bump ch.qos.logback:logback-classic in /integratio...
Branch: refs/heads/dependabot/maven/integration-test/ch.qos.logback-logback-classic-1.3.12 Home: https://github.com/cytoscape/cytoscape-gui-distribution Commit: 9cb583389c9d5c83c024b5a6df9e3471a7a3c80d https://github.com/cytoscape/cytoscape-gui-distribution/commit/9cb583389c9d5c83c024b5a6df9e3471a7a3c80d Author: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> Date: 2023-11-29 (Wed, 29 Nov 2023) Changed paths: M integration-test/pom.xml Log Message: --- Bump ch.qos.logback:logback-classic in /integration-test Bumps [ch.qos.logback:logback-classic](https://github.com/qos-ch/logback) from 0.9.29 to 1.3.12. - [Commits](https://github.com/qos-ch/logback/compare/v_0.9.29...v_1.3.12) --- updated-dependencies: - dependency-name: ch.qos.logback:logback-classic dependency-type: direct:development ... Signed-off-by: dependabot[bot] -- You received this message because you are subscribed to the Google Groups "cytoscape-cvs" group. To unsubscribe from this group and stop receiving emails from it, send an email to cytoscape-cvs+unsubscr...@googlegroups.com. To view this discussion on the web visit https://groups.google.com/d/msgid/cytoscape-cvs/cytoscape/cytoscape-gui-distribution/push/refs/heads/dependabot/maven/integration-test/ch.qos.logback-logback-classic-1.3.12/00-9cb583%40github.com.
[cytoscape/cytoscape-impl] fdd53f: Partial fix for CSD-999. The SVG problem was caus...
Branch: refs/heads/develop Home: https://github.com/cytoscape/cytoscape-impl Commit: fdd53faab280ff25344e5e01ab672d8e8e66d9bc https://github.com/cytoscape/cytoscape-impl/commit/fdd53faab280ff25344e5e01ab672d8e8e66d9bc Author: Scooter Morris Date: 2023-11-28 (Tue, 28 Nov 2023) Changed paths: M io-impl/impl/src/main/java/org/cytoscape/io/internal/write/graphics/SVGWriter.java Log Message: --- Partial fix for CSD-999. The SVG problem was caused by writing the date in the line in 16-bit Unicode. To avoid that, we simply set DeviceIndependent and the date is no longer written at all. -- You received this message because you are subscribed to the Google Groups "cytoscape-cvs" group. To unsubscribe from this group and stop receiving emails from it, send an email to cytoscape-cvs+unsubscr...@googlegroups.com. To view this discussion on the web visit https://groups.google.com/d/msgid/cytoscape-cvs/cytoscape/cytoscape-impl/push/refs/heads/develop/6cb250-fdd53f%40github.com.
[cytoscape/cytoscape-impl] 6cb250: Attempted fix for CSD-1012 -- make sure to select ...
Branch: refs/heads/develop Home: https://github.com/cytoscape/cytoscape-impl Commit: 6cb25051120d99fe58b5ba8cf6b0c68bb702389e https://github.com/cytoscape/cytoscape-impl/commit/6cb25051120d99fe58b5ba8cf6b0c68bb702389e Author: Scooter Morris Date: 2023-11-27 (Mon, 27 Nov 2023) Changed paths: M vizmap-gui-impl/src/main/java/org/cytoscape/view/vizmap/gui/internal/view/VizMapperMediator.java Log Message: --- Attempted fix for CSD-1012 -- make sure to select the proper property sheet before we createa ll of the visual property shett items -- You received this message because you are subscribed to the Google Groups "cytoscape-cvs" group. To unsubscribe from this group and stop receiving emails from it, send an email to cytoscape-cvs+unsubscr...@googlegroups.com. To view this discussion on the web visit https://groups.google.com/d/msgid/cytoscape-cvs/cytoscape/cytoscape-impl/push/refs/heads/develop/e3876a-6cb250%40github.com.
[cytoscape/cytoscape-impl] e3876a: Disposes unregistered networks (that have the SESS...
Branch: refs/heads/develop Home: https://github.com/cytoscape/cytoscape-impl Commit: e3876ae7446a35e0f079b3746b2a31e1572ed3d0 https://github.com/cytoscape/cytoscape-impl/commit/e3876ae7446a35e0f079b3746b2a31e1572ed3d0 Author: Christian Lopes Date: 2023-11-21 (Tue, 21 Nov 2023) Changed paths: M model-impl/impl/src/main/java/org/cytoscape/model/internal/CyNetworkTableManagerImpl.java M session-impl/src/main/java/org/cytoscape/session/internal/CySessionManagerImpl.java Log Message: --- Disposes unregistered networks (that have the SESSION_FILE SavePolicy) when closing a session -- CYTOSCAPE-13112 -- You received this message because you are subscribed to the Google Groups "cytoscape-cvs" group. To unsubscribe from this group and stop receiving emails from it, send an email to cytoscape-cvs+unsubscr...@googlegroups.com. To view this discussion on the web visit https://groups.google.com/d/msgid/cytoscape-cvs/cytoscape/cytoscape-impl/push/refs/heads/develop/470be7-e3876a%40github.com.
[cytoscape/cytoscape-impl] 470be7: CYTOSCAPE-13111 Avoid NPE from chart when column c...
Branch: refs/heads/develop Home: https://github.com/cytoscape/cytoscape-impl Commit: 470be71a62339bedbef6a9620828a2a111fccf6e https://github.com/cytoscape/cytoscape-impl/commit/470be71a62339bedbef6a9620828a2a111fccf6e Author: Mike Kucera Date: 2023-11-20 (Mon, 20 Nov 2023) Changed paths: M custom-graphics-internal/src/main/java/org/cytoscape/cg/internal/charts/AbstractChart.java Log Message: --- CYTOSCAPE-13111 Avoid NPE from chart when column contains error equation -- You received this message because you are subscribed to the Google Groups "cytoscape-cvs" group. To unsubscribe from this group and stop receiving emails from it, send an email to cytoscape-cvs+unsubscr...@googlegroups.com. To view this discussion on the web visit https://groups.google.com/d/msgid/cytoscape-cvs/cytoscape/cytoscape-impl/push/refs/heads/develop/3490a5-470be7%40github.com.
[cytoscape/cytoscape-impl] 3490a5: Revert "Make sure to reset the CyNetworkTableManag...
Branch: refs/heads/develop Home: https://github.com/cytoscape/cytoscape-impl Commit: 3490a5a0425e4fd848c256dc708cd82f75284999 https://github.com/cytoscape/cytoscape-impl/commit/3490a5a0425e4fd848c256dc708cd82f75284999 Author: Mike Kucera Date: 2023-11-20 (Mon, 20 Nov 2023) Changed paths: M session-impl/src/main/java/org/cytoscape/session/internal/CySessionManagerImpl.java Log Message: --- Revert "Make sure to reset the CyNetworkTableManager when we dispose of the session" This reverts commit 40d3f82a120dcc6aef408f2a3fa3271fb101976e. -- You received this message because you are subscribed to the Google Groups "cytoscape-cvs" group. To unsubscribe from this group and stop receiving emails from it, send an email to cytoscape-cvs+unsubscr...@googlegroups.com. To view this discussion on the web visit https://groups.google.com/d/msgid/cytoscape-cvs/cytoscape/cytoscape-impl/push/refs/heads/develop/174967-3490a5%40github.com.
[cytoscape/cytoscape-impl] 174967: Don't use pow to adjust the scale -- just pass the...
Branch: refs/heads/develop Home: https://github.com/cytoscape/cytoscape-impl Commit: 17496779d9239ee4e1a8d9bba4ceaa0a5858ea42 https://github.com/cytoscape/cytoscape-impl/commit/17496779d9239ee4e1a8d9bba4ceaa0a5858ea42 Author: Scooter Morris Date: 2023-11-05 (Sun, 05 Nov 2023) Changed paths: M manual-layout-impl/src/main/java/org/cytoscape/view/manual/internal/tasks/ScaleTask.java Log Message: --- Don't use pow to adjust the scale -- just pass the value along directly. CYTOSCAPE-13105 -- You received this message because you are subscribed to the Google Groups "cytoscape-cvs" group. To unsubscribe from this group and stop receiving emails from it, send an email to cytoscape-cvs+unsubscr...@googlegroups.com. To view this discussion on the web visit https://groups.google.com/d/msgid/cytoscape-cvs/cytoscape/cytoscape-impl/push/refs/heads/develop/40d3f8-174967%40github.com.
[cytoscape/cytoscape-impl] 40d3f8: Make sure to reset the CyNetworkTableManager when ...
Branch: refs/heads/develop Home: https://github.com/cytoscape/cytoscape-impl Commit: 40d3f82a120dcc6aef408f2a3fa3271fb101976e https://github.com/cytoscape/cytoscape-impl/commit/40d3f82a120dcc6aef408f2a3fa3271fb101976e Author: Scooter Morris Date: 2023-10-12 (Thu, 12 Oct 2023) Changed paths: M session-impl/src/main/java/org/cytoscape/session/internal/CySessionManagerImpl.java Log Message: --- Make sure to reset the CyNetworkTableManager when we dispose of the session -- You received this message because you are subscribed to the Google Groups "cytoscape-cvs" group. To unsubscribe from this group and stop receiving emails from it, send an email to cytoscape-cvs+unsubscr...@googlegroups.com. To view this discussion on the web visit https://groups.google.com/d/msgid/cytoscape-cvs/cytoscape/cytoscape-impl/push/refs/heads/develop/f33dd2-40d3f8%40github.com.
[cytoscape/cytoscape-admin-scripts] 1b33ff: Added log files for downloads
Branch: refs/heads/master Home: https://github.com/cytoscape/cytoscape-admin-scripts Commit: 1b33ffe6a7ecf9a37a5650455707883f0cdaf62f https://github.com/cytoscape/cytoscape-admin-scripts/commit/1b33ffe6a7ecf9a37a5650455707883f0cdaf62f Author: Joanna Lenkiewicz Date: 2023-09-19 (Tue, 19 Sep 2023) Changed paths: A project-stats/downloads/09_15_2023_app_downloads.json A project-stats/downloads/09_15_2023_releases.json Log Message: --- Added log files for downloads -- You received this message because you are subscribed to the Google Groups "cytoscape-cvs" group. To unsubscribe from this group and stop receiving emails from it, send an email to cytoscape-cvs+unsubscr...@googlegroups.com. To view this discussion on the web visit https://groups.google.com/d/msgid/cytoscape-cvs/cytoscape/cytoscape-admin-scripts/push/refs/heads/master/dd53b6-1b33ff%40github.com.
[cytoscape/cytoscape-impl] f33dd2: Implementation of commands for rotate and scale. ...
Branch: refs/heads/develop Home: https://github.com/cytoscape/cytoscape-impl Commit: f33dd2f572c535a7ebe5c46c08e8372ab57b3dde https://github.com/cytoscape/cytoscape-impl/commit/f33dd2f572c535a7ebe5c46c08e8372ab57b3dde Author: Scooter Morris Date: 2023-09-06 (Wed, 06 Sep 2023) Changed paths: M manual-layout-impl/src/main/java/org/cytoscape/view/manual/internal/CyActivator.java A manual-layout-impl/src/main/java/org/cytoscape/view/manual/internal/tasks/RotateTask.java A manual-layout-impl/src/main/java/org/cytoscape/view/manual/internal/tasks/RotateTaskFactory.java A manual-layout-impl/src/main/java/org/cytoscape/view/manual/internal/tasks/ScaleTask.java A manual-layout-impl/src/main/java/org/cytoscape/view/manual/internal/tasks/ScaleTaskFactory.java Log Message: --- Implementation of commands for rotate and scale. CYTOSCAPE-13105 -- You received this message because you are subscribed to the Google Groups "cytoscape-cvs" group. To unsubscribe from this group and stop receiving emails from it, send an email to cytoscape-cvs+unsubscr...@googlegroups.com. To view this discussion on the web visit https://groups.google.com/d/msgid/cytoscape-cvs/cytoscape/cytoscape-impl/push/refs/heads/develop/9d9ff5-f33dd2%40github.com.
[cytoscape/cytoscape] 0a703d: Update README.md
Branch: refs/heads/develop Home: https://github.com/cytoscape/cytoscape Commit: 0a703dab1a506c3f84ee4942794eedfdba40a44e https://github.com/cytoscape/cytoscape/commit/0a703dab1a506c3f84ee4942794eedfdba40a44e Author: Alexander Pico Date: 2023-08-31 (Thu, 31 Aug 2023) Changed paths: M README.md Log Message: --- Update README.md -- You received this message because you are subscribed to the Google Groups "cytoscape-cvs" group. To unsubscribe from this group and stop receiving emails from it, send an email to cytoscape-cvs+unsubscr...@googlegroups.com. To view this discussion on the web visit https://groups.google.com/d/msgid/cytoscape-cvs/cytoscape/cytoscape/push/refs/heads/develop/321bf3-0a703d%40github.com.
[cytoscape/cytoscape-admin-scripts] dd53b6: Update windows.bat 3.10.1 and java 17
Branch: refs/heads/master Home: https://github.com/cytoscape/cytoscape-admin-scripts Commit: dd53b6523cf2c50f19ccd064b8b489e559247d24 https://github.com/cytoscape/cytoscape-admin-scripts/commit/dd53b6523cf2c50f19ccd064b8b489e559247d24 Author: Alexander Pico Date: 2023-08-31 (Thu, 31 Aug 2023) Changed paths: M system-checker/windows.bat Log Message: --- Update windows.bat 3.10.1 and java 17 -- You received this message because you are subscribed to the Google Groups "cytoscape-cvs" group. To unsubscribe from this group and stop receiving emails from it, send an email to cytoscape-cvs+unsubscr...@googlegroups.com. To view this discussion on the web visit https://groups.google.com/d/msgid/cytoscape-cvs/cytoscape/cytoscape-admin-scripts/push/refs/heads/master/ae684b-dd53b6%40github.com.
[cytoscape/cytoscape-admin-scripts] ae684b: Update mac.sh 3.10.1 and java 17
Branch: refs/heads/master Home: https://github.com/cytoscape/cytoscape-admin-scripts Commit: ae684b27263b45d934e2bd1847473d7eac0e24f9 https://github.com/cytoscape/cytoscape-admin-scripts/commit/ae684b27263b45d934e2bd1847473d7eac0e24f9 Author: Alexander Pico Date: 2023-08-31 (Thu, 31 Aug 2023) Changed paths: M system-checker/mac.sh Log Message: --- Update mac.sh 3.10.1 and java 17 -- You received this message because you are subscribed to the Google Groups "cytoscape-cvs" group. To unsubscribe from this group and stop receiving emails from it, send an email to cytoscape-cvs+unsubscr...@googlegroups.com. To view this discussion on the web visit https://groups.google.com/d/msgid/cytoscape-cvs/cytoscape/cytoscape-admin-scripts/push/refs/heads/master/e5d144-ae684b%40github.com.
[cytoscape/cytoscape-admin-scripts] e5d144: Update linux.sh 3.10.1 and java 17
Branch: refs/heads/master Home: https://github.com/cytoscape/cytoscape-admin-scripts Commit: e5d144d23211297bd029a8726fb6374944f36dfb https://github.com/cytoscape/cytoscape-admin-scripts/commit/e5d144d23211297bd029a8726fb6374944f36dfb Author: Alexander Pico Date: 2023-08-31 (Thu, 31 Aug 2023) Changed paths: M system-checker/linux.sh Log Message: --- Update linux.sh 3.10.1 and java 17 -- You received this message because you are subscribed to the Google Groups "cytoscape-cvs" group. To unsubscribe from this group and stop receiving emails from it, send an email to cytoscape-cvs+unsubscr...@googlegroups.com. To view this discussion on the web visit https://groups.google.com/d/msgid/cytoscape-cvs/cytoscape/cytoscape-admin-scripts/push/refs/heads/master/26ee5d-e5d144%40github.com.
