subject:"\[DuMux\] Error in installing Dumux"

Re: [DuMux] Error in installing Dumux

2021-11-04 Thread Timo Koch

Hi Amir,

looks like your file system is corrupted somehow or you don’t have permissions 
to create files on this file system.
On which OS are you running this?

What does “git clone https://gitlab.dune-project.org/core/dune-common.git” 
return?
Or even simpler: "touch bla.txt”?

If you are running an Ubunut shell on Windows this might help
https://askubuntu.com/questions/1115564/wsl-ubuntu-distro-how-to-solve-operation-not-permitted-on-cloning-repository
 


In any case, your issue is not related to dumux or dune.

Best wishes,
Timo

> On 4. Nov 2021, at 18:18, Amir Mohammad Norouzi 
>  wrote:
> 
> To whom it may concern,
> 
> I am a researcher at the University of Manchester and I am trying to install 
> Dumux on my laptop, but I constantly get this error:
> 
> (1/3) Checking all prerequistes: git gcc g++ cmake pkg-config...
> *
> *
> (1/3) Step completed. All prerequistes found.
> *
> *
> (2/3) Cloning repositories. This may take a while. Make sure to be connected 
> to the internet...
> *
> Cloning into 'dune-common'...
> error: chmod on /mnt/c/work/dumux/dune-common/.git/config.lock failed: 
> Operation not permitted
> fatal: could not set 'core.filemode' to 'false'
> *
> (Error) The command ['git', 'clone', '-b', 'releases/2.7', 
> 'https://gitlab.dune-project.org/core/dune-common.git 
> '] returned with 
> non-zero exit code
> 
> If you can't fix the problem yourself consider reporting your issue on the 
> mailing list (dumux@listserv.uni-stuttgart.de 
> ) and attach the file 
> 'installdumux.log'
> 
> 
> I have also attached the .log file to this email.
> 
> I appreciated your help in advance.
> 
> Many thanks,
> 
> Amir Mohammad Norouzi
> ___
> DuMux mailing list
> DuMux@listserv.uni-stuttgart.de 
> https://listserv.uni-stuttgart.de/mailman/listinfo/dumux 
> 
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[DuMux] Error in installing Dumux

2021-11-04 Thread Amir Mohammad Norouzi

To whom it may concern,

I am a researcher at the University of Manchester and I am trying to install 
Dumux on my laptop, but I constantly get this error:

(1/3) Checking all prerequistes: git gcc g++ cmake pkg-config...
*
*
(1/3) Step completed. All prerequistes found.
*
*
(2/3) Cloning repositories. This may take a while. Make sure to be connected to 
the internet...
*
Cloning into 'dune-common'...
error: chmod on /mnt/c/work/dumux/dune-common/.git/config.lock failed: 
Operation not permitted
fatal: could not set 'core.filemode' to 'false'
*
(Error) The command ['git', 'clone', '-b', 'releases/2.7', 
'https://gitlab.dune-project.org/core/dune-common.git'] returned with non-zero 
exit code

If you can't fix the problem yourself consider reporting your issue on the 
mailing list (dumux@listserv.uni-stuttgart.de) and attach the file 
'installdumux.log'


I have also attached the .log file to this email.

I appreciated your help in advance.

Many thanks,

Amir Mohammad Norouzi


installdumux.log
Description: installdumux.log
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Re: [DuMuX] Error while installing dumux

2018-07-16 Thread Kilian Weishaupt

)

*From:*Timo Koch
*Sent:* 16. juli 2018 13:35
*To:* Maria Bonto
*Cc:* dumux@listserv.uni-stuttgart.de
*Subject:* Re: [DuMuX] Error while installing dumux

Hi Maria,

you can choose your compiler in the file “cmake.opts” that was
downloaded to the newly created folder.

Replace the lines /usr/bin/g++ and /usr/bin/gcc by a path to a newer
compiler, maybe /usr/bin/gcc is still pointing to 4.2.1. By the way
gcc 4.9 is still ancient. There is gcc 8.1, you can install it with
homebrew.

After you replace the lines, delete the build directories by typing
“rm -rf d*/build-cmake” and run dune control again
“./dune-common/bin/dunecontrol —opts=cmake.opts all”. Maybe that helps.

Timo

On 16. Jul 2018, at 13:20, Maria Bonto mailto:ma...@dtu.dk>> wrote:

I just eliminated paraview from that line. However, I had to
comment the paragraph below because it says that gcc version is
4.2.1 and it needs at least 4.9.0. I downloaded a new one and
added it to the path.

When I type gcc --version it says 4.9.4. However, in the
installation I still got the same error.

see below:

DuMuX mac$ gcc --version

gcc (Homebrew GCC 4.9.4_1) 4.9.4

This is free software; see the source for copying conditions.
There is NO

warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR
PURPOSE.

Moreover, I tried the installation (with all the lines in the
script) on another laptop on a virtual linux environment. I don't
get any complaints about gcc, paraview etc, but I get exactly the
same error related to Cmake, as the error I get on my Mac.

*De:*Timo Koch mailto:koch_t...@hotmail.com>>
*Enviado:*lunes, 16 de julio de 2018 13:14:39
*Para:*dumux@listserv.uni-stuttgart.de
<mailto:dumux@listserv.uni-stuttgart.de>; Maria Bonto
*Asunto:*Re: [DuMuX] Error while installing dumux

Hi Maria,

most likely it cannot find paraview because it's installed as an
app on macOS. Can you only delete paraview from the script in that
line and not comment the whole line. The other checks are
important. You probably need a newer compiler. Can you type the
output of gcc --version?

Timo

On 16.07.2018 13:09, Maria Bonto wrote:

This does not work.

I get the following errors below. When I first started
installing the software on the Mac I got an error about
paraview. It was saying that paraview was not installed when
it actually was installed. So I was told to comment that line
where the script checks paraview. I can see in the last line
that it complains again about paraview.

*/Volumes/MARY/DuMuX/dumux/dune-alugrid/dune/alugrid/common/memory.hh:184:14:error:
*

*thread-local storage is not supported for the current target*

static thread_local MemoryPoolType pool;

* ^*

In file included from

/Volumes/MARY/DuMuX/dumux/dumux/test/porousmediumflow/1p/implicit/test_1pfv.cc:35
<http://test_1pfv.cc:35/>:

In file included from

/Volumes/MARY/DuMuX/dumux/dumux/test/porousmediumflow/1p/implicit/1ptestproblem.hh:30:

In file included from

/Volumes/MARY/DuMuX/dumux/dumux/dumux/discretization/cellcentered/tpfa/properties.hh:30:

In file included from
/Volumes/MARY/DuMuX/dumux/dumux/dumux/common/boundaryflag.hh:36:

In file included from
/Volumes/MARY/DuMuX/dumux/dune-subgrid/dune/subgrid/subgrid.hh:28:

*/Volumes/MARY/DuMuX/dumux/dune-subgrid/dune/subgrid/subgrid/subgridleafintersectioniterator.hh:5:10:fatal
error: *

*'tr1/memory' file not found*

#include

* ^*

2 errors generated.

make[3]: ***

[test/porousmediumflow/1p/implicit/CMakeFiles/test_1pcctpfa.dir/test_1pfv.cc.o]
Error 1

make[2]: ***
[test/porousmediumflow/1p/implicit/CMakeFiles/test_1pcctpfa.dir/all]
Error 2

make[1]: ***
[test/porousmediumflow/1p/implicit/CMakeFiles/test_1pcctpfa.dir/rule]
Error 2

make: ***
[test/porousmediumflow/1p/implicit/CMakeFiles/test_1pcctpfa.dir/rule]
Error 2

Running simulation...

./test_dumux.sh: line 8: ./test_1pcctpfa: No such file or
directory

./test_dumux.sh: line 9: paraview: command not found

*De:*Bernd Flemisch
<mailto:be...@iws.uni-stuttgart.de>
*Enviado:*lunes, 16 de julio de 2018 12:59:25
*Para:*Maria Bonto; DuMuX User Forum
*Asunto:*Re: [DuMuX] Error while installing dumux

Ok. Try a
cd /Volumes/MARY/DuMuX/dumux
./test_dumux.sh

Re: [DuMuX] Error while installing dumux

2018-07-16 Thread Maria Bonto

I decided to follow with the installation on the virtual linux machine because 
in this case I don’t get any complaints about additional software and I don’t 
need to comment any line in the installation script.  I also commented the line 
in add_subdirectory(stokesdarcy)  from the 
test/multidomain/boundary/CMakeLists.txt and I delete the folder build-cmake 
from the dumux directory and I still get the errors below on this laptop. I ran 
also the ./test_dumux. Sh and I got the following: Compiling a one-phase test 
using a cell-centered TPFA discretization (might take a while)...
make: *** No rule to make target 'test_1pcctpfa'.  Stop.
Running simulation...
./test_dumux.sh: line 8: ./test_1pcctpfa: No such file or directory
OpenGL Warning: No pincher, please call crStateSetCurrentPointers() in your SPU
OpenGL Warning: vboxCall failed with VBox status code VERR_BUFFER_OVERFLOW

OpenGL Warning: No pincher, please call crStateSetCurrentPointers() in your SPU

The errros at executing the installation script are shown below:

CMake Error at 
/home/maria/projects/DuMuX/dumux/dune-common/cmake/modules/DuneTestMacros.cmake:255
 (add_executable):
  add_executable cannot create target "test_stokes1pdarcy2pvertical" because
  another target with the same name already exists.  The existing target is
  an executable created in source directory
  
"/home/maria/projects/DuMuX/dumux/dumux/test/multidomain/boundary/stokesdarcy/1p_2p".
  See documentation for policy CMP0002 for more details.
Call Stack (most recent call first):
  test/multidomain/boundary/stokesdarcy/1p_2p/CMakeLists.txt:5 (dune_add_test)


CMake Error at 
/home/maria/projects/DuMuX/dumux/dune-common/cmake/modules/DuneTestMacros.cmake:255
 (add_executable):
  add_executable cannot create target "test_stokes1p2cdarcy1p2chorizontal"
  because another target with the same name already exists.  The existing
  target is an executable created in source directory
  
"/home/maria/projects/DuMuX/dumux/dumux/test/multidomain/boundary/stokesdarcy/1p2c_1p2c/horizontalflow".
  See documentation for policy CMP0002 for more details.
Call Stack (most recent call first):
  
test/multidomain/boundary/stokesdarcy/1p2c_1p2c/horizontalflow/CMakeLists.txt:5 
(dune_add_test)


CMake Error at 
/home/maria/projects/DuMuX/dumux/dune-common/cmake/modules/DuneTestMacros.cmake:255
 (add_executable):
  add_executable cannot create target "test_stokes1p2cdarcy2p2chorizontal"
  because another target with the same name already exists.  The existing
  target is an executable created in source directory
  
"/home/maria/projects/DuMuX/dumux/dumux/test/multidomain/boundary/stokesdarcy/1p2c_2p2c".
  See documentation for policy CMP0002 for more details.
Call Stack (most recent call first):
  test/multidomain/boundary/stokesdarcy/1p2c_2p2c/CMakeLists.txt:5 
(dune_add_test)


CMake Error at 
/home/maria/projects/DuMuX/dumux/dune-common/cmake/modules/DuneTestMacros.cmake:255
 (add_executable):
  add_executable cannot create target "test_stokes1pdarcy2pvertical" because
  another target with the same name already exists.  The existing target is
  an executable created in source directory
  
"/home/maria/projects/DuMuX/dumux/dumux/test/multidomain/boundary/stokesdarcy/1p_2p".
  See documentation for policy CMP0002 for more details.
Call Stack (most recent call first):
  test/multidomain/boundary/stokesdarcy/1p_2p/CMakeLists.txt:5 (dune_add_test)


CMake Error at 
/home/maria/projects/DuMuX/dumux/dune-common/cmake/modules/DuneTestMacros.cmake:255
 (add_executable):
  add_executable cannot create target "test_stokes1p2cdarcy1p2chorizontal"
  because another target with the same name already exists.  The existing
  target is an executable created in source directory
  
"/home/maria/projects/DuMuX/dumux/dumux/test/multidomain/boundary/stokesdarcy/1p2c_1p2c/horizontalflow".
  See documentation for policy CMP0002 for more details.
Call Stack (most recent call first):
  
test/multidomain/boundary/stokesdarcy/1p2c_1p2c/horizontalflow/CMakeLists.txt:5 
(dune_add_test)


CMake Error at 
/home/maria/projects/DuMuX/dumux/dune-common/cmake/modules/DuneTestMacros.cmake:255
 (add_executable):
  add_executable cannot create target "test_stokes1p2cdarcy2p2chorizontal"
  because another target with the same name already exists.  The existing
  target is an executable created in source directory
  
"/home/maria/projects/DuMuX/dumux/dumux/test/multidomain/boundary/stokesdarcy/1p2c_2p2c".
  See documentation for policy CMP0002 for more details.
Call Stack (most recent call first):
  test/multidomain/boundary/stokesdarcy/1p2c_2p2c/CMakeLists.txt:5 
(dune_add_test)






From: Timo Koch 
Sent: 16. juli 2018 13:35
To: Maria Bonto 
Cc: dumux@listserv.uni-stuttgart.de
Subject: Re: [DuMuX] Error while installing dumux

Hi Maria,

you can choose your compiler in the file “cmake.opts” that was downloaded

Re: [DuMuX] Error while installing dumux

2018-07-16 Thread Timo Koch

Hi Maria,

you can choose your compiler in the file “cmake.opts” that was downloaded to 
the newly created folder.
Replace the lines /usr/bin/g++ and /usr/bin/gcc by a path to a newer compiler, 
maybe /usr/bin/gcc is still pointing to 4.2.1. By the way gcc 4.9 is still 
ancient. There is gcc 8.1, you can install it with homebrew.

After you replace the lines, delete the build directories by typing “rm -rf 
d*/build-cmake” and run dune control again “./dune-common/bin/dunecontrol 
—opts=cmake.opts all”. Maybe that helps.

Timo

> On 16. Jul 2018, at 13:20, Maria Bonto mailto:ma...@dtu.dk>> 
> wrote:
> 
> I just eliminated paraview from that line. However, I had to comment the 
> paragraph below because it says that gcc version is 4.2.1 and it needs at 
> least 4.9.0. I downloaded a new one and added it to the path.
> 
> When I type gcc --version it says 4.9.4. However, in the installation I still 
> got the same error.
> 
> see below:
> 
> DuMuX mac$ gcc --version
> gcc (Homebrew GCC 4.9.4_1) 4.9.4
> Copyright (C) 2015 Free Software Foundation, Inc.
> This is free software; see the source for copying conditions.  There is NO
> warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.
> 
> 
> Moreover, I tried the installation (with all the lines in the script) on 
> another laptop on a virtual linux environment. I don't get any complaints 
> about gcc, paraview etc, but I get exactly the same error related to Cmake, 
> as the error I get on my Mac.
> 
> 
> De: Timo Koch mailto:koch_t...@hotmail.com>>
> Enviado: lunes, 16 de julio de 2018 13:14:39
> Para: dumux@listserv.uni-stuttgart.de 
> <mailto:dumux@listserv.uni-stuttgart.de>; Maria Bonto
> Asunto: Re: [DuMuX] Error while installing dumux
>  
> Hi Maria,
> 
> most likely it cannot find paraview because it's installed as an app on 
> macOS. Can you only delete paraview from the script in that line and not 
> comment the whole line. The other checks are important. You probably need a 
> newer compiler. Can you type the output of gcc --version?
> 
> Timo
> 
> On 16.07.2018 13:09, Maria Bonto wrote:
>> This does not work.
>> I get the following errors below. When I first started installing the 
>> software on the Mac I got an error about paraview. It was saying that 
>> paraview was not installed when it actually was installed. So I was told to 
>> comment that line where the script checks paraview. I can see in the last 
>> line that it complains again about paraview.
>> 
>> /Volumes/MARY/DuMuX/dumux/dune-alugrid/dune/alugrid/common/memory.hh:184:14: 
>> error: 
>>   thread-local storage is not supported for the current target
>>   static thread_local MemoryPoolType pool;
>>  ^
>> In file included from 
>> /Volumes/MARY/DuMuX/dumux/dumux/test/porousmediumflow/1p/implicit/test_1pfv.cc:35
>>  <http://test_1pfv.cc:35/>:
>> In file included from 
>> /Volumes/MARY/DuMuX/dumux/dumux/test/porousmediumflow/1p/implicit/1ptestproblem.hh:30:
>> In file included from 
>> /Volumes/MARY/DuMuX/dumux/dumux/dumux/discretization/cellcentered/tpfa/properties.hh:30:
>> In file included from 
>> /Volumes/MARY/DuMuX/dumux/dumux/dumux/common/boundaryflag.hh:36:
>> In file included from 
>> /Volumes/MARY/DuMuX/dumux/dune-subgrid/dune/subgrid/subgrid.hh:28:
>> /Volumes/MARY/DuMuX/dumux/dune-subgrid/dune/subgrid/subgrid/subgridleafintersectioniterator.hh:5:10:
>>  fatal error: 
>>   'tr1/memory' file not found
>> #include 
>>  ^
>> 2 errors generated.
>> make[3]: *** 
>> [test/porousmediumflow/1p/implicit/CMakeFiles/test_1pcctpfa.dir/test_1pfv.cc.o]
>>  Error 1
>> make[2]: *** 
>> [test/porousmediumflow/1p/implicit/CMakeFiles/test_1pcctpfa.dir/all] Error 2
>> make[1]: *** 
>> [test/porousmediumflow/1p/implicit/CMakeFiles/test_1pcctpfa.dir/rule] Error 2
>> make: *** 
>> [test/porousmediumflow/1p/implicit/CMakeFiles/test_1pcctpfa.dir/rule] Error 2
>> Running simulation...
>> ./test_dumux.sh: line 8: ./test_1pcctpfa: No such file or directory
>> ./test_dumux.sh: line 9: paraview: command not found
>> 
>> 
>> De: Bernd Flemisch  
>> <mailto:be...@iws.uni-stuttgart.de>
>> Enviado: lunes, 16 de julio de 2018 12:59:25
>> Para: Maria Bonto; DuMuX User Forum
>> Asunto: Re: [DuMuX] Error while installing dumux
>>  
>> Ok. Try a
>> cd /Volumes/MARY/DuMuX/dumux
>> ./test_dumux.sh
>> 
>> Bernd
>> 
>> On 07/16/2018 12:55 PM, Maria Bonto wrote:
>>> I did that. I didn't get any errors in this case. 
>>> 
>>> Configuring done
>>>

Re: [DuMuX] Error while installing dumux

2018-07-16 Thread Maria Bonto

This does not work.

I get the following errors below. When I first started installing the software 
on the Mac I got an error about paraview. It was saying that paraview was not 
installed when it actually was installed. So I was told to comment that line 
where the script checks paraview. I can see in the last line that it complains 
again about paraview.


/Volumes/MARY/DuMuX/dumux/dune-alugrid/dune/alugrid/common/memory.hh:184:14: 
error:

  thread-local storage is not supported for the current target

  static thread_local MemoryPoolType pool;

 ^

In file included from 
/Volumes/MARY/DuMuX/dumux/dumux/test/porousmediumflow/1p/implicit/test_1pfv.cc:35:

In file included from 
/Volumes/MARY/DuMuX/dumux/dumux/test/porousmediumflow/1p/implicit/1ptestproblem.hh:30:

In file included from 
/Volumes/MARY/DuMuX/dumux/dumux/dumux/discretization/cellcentered/tpfa/properties.hh:30:

In file included from 
/Volumes/MARY/DuMuX/dumux/dumux/dumux/common/boundaryflag.hh:36:

In file included from 
/Volumes/MARY/DuMuX/dumux/dune-subgrid/dune/subgrid/subgrid.hh:28:

/Volumes/MARY/DuMuX/dumux/dune-subgrid/dune/subgrid/subgrid/subgridleafintersectioniterator.hh:5:10:
 fatal error:

  'tr1/memory' file not found

#include 

 ^

2 errors generated.

make[3]: *** 
[test/porousmediumflow/1p/implicit/CMakeFiles/test_1pcctpfa.dir/test_1pfv.cc.o] 
Error 1

make[2]: *** 
[test/porousmediumflow/1p/implicit/CMakeFiles/test_1pcctpfa.dir/all] Error 2

make[1]: *** 
[test/porousmediumflow/1p/implicit/CMakeFiles/test_1pcctpfa.dir/rule] Error 2

make: *** [test/porousmediumflow/1p/implicit/CMakeFiles/test_1pcctpfa.dir/rule] 
Error 2

Running simulation...

./test_dumux.sh: line 8: ./test_1pcctpfa: No such file or directory

./test_dumux.sh: line 9: paraview: command not found




De: Bernd Flemisch 
Enviado: lunes, 16 de julio de 2018 12:59:25
Para: Maria Bonto; DuMuX User Forum
Asunto: Re: [DuMuX] Error while installing dumux

Ok. Try a
cd /Volumes/MARY/DuMuX/dumux
./test_dumux.sh

Bernd

On 07/16/2018 12:55 PM, Maria Bonto wrote:

I did that. I didn't get any errors in this case.


Configuring done

-- Generating done

-- Build files have been written to: /Volumes/MARY/DuMuX/dumux/dumux/build-cmake

--- calling make for dumux ---

build directory: build-cmake

cmake --build . --

--- dumux done ---

--- done ---


De: Bernd Flemisch 
<mailto:be...@iws.uni-stuttgart.de>
Enviado: lunes, 16 de julio de 2018 12:49:26
Para: Maria Bonto; DuMuX User Forum
Asunto: Re: [DuMuX] Error while installing dumux


Can you remove the line, then do a
cd /Volumes/MARY/DuMuX/dumux/
rm -rf dumux/build-cmake
./dune-common/bin/dunecontrol --opts=cmake.opts --only=dumux all
and see if that works?

Bernd

On 07/16/2018 12:33 PM, Maria Bonto wrote:

Dear Bernd,


I did what you suggested and I still get the same errors. After running the 
script again I saw that the folder is created again and also the line that I 
removed. I tried the same procedure several times but I still get the following 
errors:


CMake Error at 
/Volumes/MARY/DuMuX/dumux/dune-common/cmake/modules/DuneTestMacros.cmake:255 
(add_executable):

  add_executable cannot create target "test_stokes1pdarcy2pvertical" because

  another target with the same name already exists.  The existing target is

  an executable created in source directory

  "/Volumes/MARY/DuMuX/dumux/dumux/test/multidomain/boundary/stokesdarcy/1p_2p".

  See documentation for policy CMP0002 for more details.

Call Stack (most recent call first):

  test/multidomain/boundary/stokesdarcy/1p_2p/CMakeLists.txt:5 (dune_add_test)



CMake Error at 
/Volumes/MARY/DuMuX/dumux/dune-common/cmake/modules/DuneTestMacros.cmake:255 
(add_executable):

  add_executable cannot create target "test_stokes1p2cdarcy1p2chorizontal"

  because another target with the same name already exists.  The existing

  target is an executable created in source directory

  
"/Volumes/MARY/DuMuX/dumux/dumux/test/multidomain/boundary/stokesdarcy/1p2c_1p2c/horizontalflow".

  See documentation for policy CMP0002 for more details.

Call Stack (most recent call first):

  
test/multidomain/boundary/stokesdarcy/1p2c_1p2c/horizontalflow/CMakeLists.txt:5 
(dune_add_test)



CMake Error at 
/Volumes/MARY/DuMuX/dumux/dune-common/cmake/modules/DuneTestMacros.cmake:255 
(add_executable):

  add_executable cannot create target "test_stokes1p2cdarcy2p2chorizontal"

  because another target with the same name already exists.  The existing

  target is an executable created in source directory

  
"/Volumes/MARY/DuMuX/dumux/dumux/test/multidomain/boundary/stokesdarcy/1p2c_2p2c".

  See documentation for policy CMP0002 for more details.

Call Stack (most recent call first):

  test/multidomain/boundary/stokesdarcy/1p2c_2p2c/CMakeLists.txt:5 
(dune_add_test)

Regards,
María.
__

Re: [DuMuX] Error while installing dumux

2018-07-16 Thread Bernd Flemisch


Hi Maria,

we might have fixed the problem. Can you check if executing the script 
works now?


Kind regards
Bernd

On 07/16/2018 01:01 PM, Maria Bonto wrote:


Hi Timo,


The version is: 3.11.4


cmake version 3.11.4


*De:* Timo Koch 
*Enviado:* lunes, 16 de julio de 2018 12:58:34
*Para:* dumux@listserv.uni-stuttgart.de
*Asunto:* Re: [DuMuX] Error while installing dumux

Hi Maria,


I tried to recreate this problem on a Mac but I couldn't. What your 
cmake version? Output of cmake --version?



Timo


On 16.07.2018 12:55, Maria Bonto wrote:


I did that. I didn't get any errors in this case.


Configuring done

-- Generating done

-- Build files have been written to: 
/Volumes/MARY/DuMuX/dumux/dumux/build-cmake


--- calling make for dumux ---

build directory: build-cmake

cmake --build . --

--- dumux done ---

--- done ---


*De:* Bernd Flemisch  
<mailto:be...@iws.uni-stuttgart.de>

*Enviado:* lunes, 16 de julio de 2018 12:49:26
*Para:* Maria Bonto; DuMuX User Forum
*Asunto:* Re: [DuMuX] Error while installing dumux

Can you remove the line, then do a
cd /Volumes/MARY/DuMuX/dumux/
rm -rf dumux/build-cmake
./dune-common/bin/dunecontrol --opts=cmake.opts --only=dumux all
and see if that works?

Bernd


On 07/16/2018 12:33 PM, Maria Bonto wrote:


Dear Bernd,


I did what you suggested and I still get the same errors. After 
running the script again I saw that the folder is created again and 
also the line that I removed. I tried the same procedure several 
times but I still get the following errors:



CMake Error at 
/Volumes/MARY/DuMuX/dumux/dune-common/cmake/modules/DuneTestMacros.cmake:255 
(add_executable):


  add_executable cannot create target "test_stokes1pdarcy2pvertical" 
because


  another target with the same name already exists.  The existing 
target is


  an executable created in source directory

"/Volumes/MARY/DuMuX/dumux/dumux/test/multidomain/boundary/stokesdarcy/1p_2p".

  See documentation for policy CMP0002 for more details.

Call Stack (most recent call first):

test/multidomain/boundary/stokesdarcy/1p_2p/CMakeLists.txt:5 
(dune_add_test)




CMake Error at 
/Volumes/MARY/DuMuX/dumux/dune-common/cmake/modules/DuneTestMacros.cmake:255 
(add_executable):


  add_executable cannot create target 
"test_stokes1p2cdarcy1p2chorizontal"


  because another target with the same name already exists.  The 
existing


  target is an executable created in source directory

"/Volumes/MARY/DuMuX/dumux/dumux/test/multidomain/boundary/stokesdarcy/1p2c_1p2c/horizontalflow".

  See documentation for policy CMP0002 for more details.

Call Stack (most recent call first):

test/multidomain/boundary/stokesdarcy/1p2c_1p2c/horizontalflow/CMakeLists.txt:5 
(dune_add_test)




CMake Error at 
/Volumes/MARY/DuMuX/dumux/dune-common/cmake/modules/DuneTestMacros.cmake:255 
(add_executable):


  add_executable cannot create target 
"test_stokes1p2cdarcy2p2chorizontal"


  because another target with the same name already exists.  The 
existing


  target is an executable created in source directory

"/Volumes/MARY/DuMuX/dumux/dumux/test/multidomain/boundary/stokesdarcy/1p2c_2p2c".

  See documentation for policy CMP0002 for more details.

Call Stack (most recent call first):

test/multidomain/boundary/stokesdarcy/1p2c_2p2c/CMakeLists.txt:5 
(dune_add_test)



Regards,
María.

*De:* Bernd Flemisch  
<mailto:be...@iws.uni-stuttgart.de>

*Enviado:* lunes, 16 de julio de 2018 11:56:19
*Para:* Maria Bonto; DuMuX User Forum
*Asunto:* Re: [DuMuX] Error while installing dumux
Ok, thank you. Apparently, the constructions that we do in the 
CMakeLists.txt of test/multidomain/boundary/stokesdarcy/1p_2p and 
test/multidomain/boundary/stokesdarcy/1p2c_2p2c result in problems 
on your Mac.


As a temporary workaround to get things running, it should be ok to 
comment/remove the line

add_subdirectory(stokesdarcy)
from test/multidomain/boundary/CMakeLists.txt, remove the folder 
build-cmake from your dumux directory and run the script again.


Meanwhile, we will try to fix the problem in the offending 
CMakeLists.txt.


Kind regards
Bernd

On 07/16/2018 11:45 AM, Maria Bonto wrote:


Dear Bernd,


I started again from the beginning but I still get the same errors.


Regards,


María.


*De:* Bernd Flemisch  
<mailto:be...@iws.uni-stuttgart.de>

*Enviado:* lunes, 16 de julio de 2018 11:34:33
*Para:* Maria Bonto; DuMuX User Forum
*Asunto:* Re: [DuMuX] Error while installing dumux
Can you maybe try to restart from scratch?

Kind regards
Bernd

On 07/16/2018 11:25 AM, Maria Bonto wrote:


I inst

Re: [DuMuX] Error while installing dumux

2018-07-16 Thread Maria Bonto

Hi Timo,


The version is: 3.11.4


cmake version 3.11.4


De: Timo Koch 
Enviado: lunes, 16 de julio de 2018 12:58:34
Para: dumux@listserv.uni-stuttgart.de
Asunto: Re: [DuMuX] Error while installing dumux


Hi Maria,


I tried to recreate this problem on a Mac but I couldn't. What your cmake 
version? Output of cmake --version?


Timo

On 16.07.2018 12:55, Maria Bonto wrote:

I did that. I didn't get any errors in this case.


Configuring done

-- Generating done

-- Build files have been written to: /Volumes/MARY/DuMuX/dumux/dumux/build-cmake

--- calling make for dumux ---

build directory: build-cmake

cmake --build . --

--- dumux done ---

--- done ---


De: Bernd Flemisch 
<mailto:be...@iws.uni-stuttgart.de>
Enviado: lunes, 16 de julio de 2018 12:49:26
Para: Maria Bonto; DuMuX User Forum
Asunto: Re: [DuMuX] Error while installing dumux


Can you remove the line, then do a
cd /Volumes/MARY/DuMuX/dumux/
rm -rf dumux/build-cmake
./dune-common/bin/dunecontrol --opts=cmake.opts --only=dumux all
and see if that works?

Bernd

On 07/16/2018 12:33 PM, Maria Bonto wrote:

Dear Bernd,


I did what you suggested and I still get the same errors. After running the 
script again I saw that the folder is created again and also the line that I 
removed. I tried the same procedure several times but I still get the following 
errors:


CMake Error at 
/Volumes/MARY/DuMuX/dumux/dune-common/cmake/modules/DuneTestMacros.cmake:255 
(add_executable):

  add_executable cannot create target "test_stokes1pdarcy2pvertical" because

  another target with the same name already exists.  The existing target is

  an executable created in source directory

  "/Volumes/MARY/DuMuX/dumux/dumux/test/multidomain/boundary/stokesdarcy/1p_2p".

  See documentation for policy CMP0002 for more details.

Call Stack (most recent call first):

  test/multidomain/boundary/stokesdarcy/1p_2p/CMakeLists.txt:5 (dune_add_test)



CMake Error at 
/Volumes/MARY/DuMuX/dumux/dune-common/cmake/modules/DuneTestMacros.cmake:255 
(add_executable):

  add_executable cannot create target "test_stokes1p2cdarcy1p2chorizontal"

  because another target with the same name already exists.  The existing

  target is an executable created in source directory

  
"/Volumes/MARY/DuMuX/dumux/dumux/test/multidomain/boundary/stokesdarcy/1p2c_1p2c/horizontalflow".

  See documentation for policy CMP0002 for more details.

Call Stack (most recent call first):

  
test/multidomain/boundary/stokesdarcy/1p2c_1p2c/horizontalflow/CMakeLists.txt:5 
(dune_add_test)



CMake Error at 
/Volumes/MARY/DuMuX/dumux/dune-common/cmake/modules/DuneTestMacros.cmake:255 
(add_executable):

  add_executable cannot create target "test_stokes1p2cdarcy2p2chorizontal"

  because another target with the same name already exists.  The existing

  target is an executable created in source directory

  
"/Volumes/MARY/DuMuX/dumux/dumux/test/multidomain/boundary/stokesdarcy/1p2c_2p2c".

  See documentation for policy CMP0002 for more details.

Call Stack (most recent call first):

  test/multidomain/boundary/stokesdarcy/1p2c_2p2c/CMakeLists.txt:5 
(dune_add_test)

Regards,
María.

De: Bernd Flemisch 
<mailto:be...@iws.uni-stuttgart.de>
Enviado: lunes, 16 de julio de 2018 11:56:19
Para: Maria Bonto; DuMuX User Forum
Asunto: Re: [DuMuX] Error while installing dumux

Ok, thank you. Apparently, the constructions that we do in the CMakeLists.txt 
of test/multidomain/boundary/stokesdarcy/1p_2p and 
test/multidomain/boundary/stokesdarcy/1p2c_2p2c result in problems on your Mac.

As a temporary workaround to get things running, it should be ok to 
comment/remove the line
add_subdirectory(stokesdarcy)
from test/multidomain/boundary/CMakeLists.txt, remove the folder build-cmake 
from your dumux directory and run the script again.

Meanwhile, we will try to fix the problem in the offending CMakeLists.txt.

Kind regards
Bernd

On 07/16/2018 11:45 AM, Maria Bonto wrote:

Dear Bernd,


I started again from the beginning but I still get the same errors.


Regards,


María.


De: Bernd Flemisch 
<mailto:be...@iws.uni-stuttgart.de>
Enviado: lunes, 16 de julio de 2018 11:34:33
Para: Maria Bonto; DuMuX User Forum
Asunto: Re: [DuMuX] Error while installing dumux

Can you maybe try to restart from scratch?

Kind regards
Bernd

On 07/16/2018 11:25 AM, Maria Bonto wrote:

I installed gfortran 4.9.2, but I still get errors. I attach the new console 
output.





De: Bernd Flemisch 
<mailto:be...@iws.uni-stuttgart.de>
Enviado: lunes, 16 de julio de 2018 10:50:26
Para: Maria Bonto
Asunto: Re: [DuMuX] Error while installing dumux

Ok, you need a Fortran compiler. On Mac, you might want to want to consider
https://scicomp.stackexchange.com/questions/2469/how-should-i-install-a-fortran-co

Re: [DuMuX] Error while installing dumux

2018-07-16 Thread Bernd Flemisch


Ok. Try a
cd /Volumes/MARY/DuMuX/dumux
./test_dumux.sh

Bernd

On 07/16/2018 12:55 PM, Maria Bonto wrote:


I did that. I didn't get any errors in this case.


Configuring done

-- Generating done

-- Build files have been written to: 
/Volumes/MARY/DuMuX/dumux/dumux/build-cmake


--- calling make for dumux ---

build directory: build-cmake

cmake --build . --

--- dumux done ---

--- done ---


*De:* Bernd Flemisch 
*Enviado:* lunes, 16 de julio de 2018 12:49:26
*Para:* Maria Bonto; DuMuX User Forum
*Asunto:* Re: [DuMuX] Error while installing dumux

Can you remove the line, then do a
cd /Volumes/MARY/DuMuX/dumux/
rm -rf dumux/build-cmake
./dune-common/bin/dunecontrol --opts=cmake.opts --only=dumux all
and see if that works?

Bernd


On 07/16/2018 12:33 PM, Maria Bonto wrote:


Dear Bernd,


I did what you suggested and I still get the same errors. After 
running the script again I saw that the folder is created again and 
also the line that I removed. I tried the same procedure several 
times but I still get the following errors:



CMake Error at 
/Volumes/MARY/DuMuX/dumux/dune-common/cmake/modules/DuneTestMacros.cmake:255 
(add_executable):


  add_executable cannot create target "test_stokes1pdarcy2pvertical" 
because


  another target with the same name already exists.  The existing 
target is


  an executable created in source directory

"/Volumes/MARY/DuMuX/dumux/dumux/test/multidomain/boundary/stokesdarcy/1p_2p".

  See documentation for policy CMP0002 for more details.

Call Stack (most recent call first):

test/multidomain/boundary/stokesdarcy/1p_2p/CMakeLists.txt:5 
(dune_add_test)




CMake Error at 
/Volumes/MARY/DuMuX/dumux/dune-common/cmake/modules/DuneTestMacros.cmake:255 
(add_executable):


  add_executable cannot create target 
"test_stokes1p2cdarcy1p2chorizontal"


  because another target with the same name already exists.  The existing

  target is an executable created in source directory

"/Volumes/MARY/DuMuX/dumux/dumux/test/multidomain/boundary/stokesdarcy/1p2c_1p2c/horizontalflow".

  See documentation for policy CMP0002 for more details.

Call Stack (most recent call first):

test/multidomain/boundary/stokesdarcy/1p2c_1p2c/horizontalflow/CMakeLists.txt:5 
(dune_add_test)




CMake Error at 
/Volumes/MARY/DuMuX/dumux/dune-common/cmake/modules/DuneTestMacros.cmake:255 
(add_executable):


  add_executable cannot create target 
"test_stokes1p2cdarcy2p2chorizontal"


  because another target with the same name already exists.  The existing

  target is an executable created in source directory

"/Volumes/MARY/DuMuX/dumux/dumux/test/multidomain/boundary/stokesdarcy/1p2c_2p2c".

  See documentation for policy CMP0002 for more details.

Call Stack (most recent call first):

test/multidomain/boundary/stokesdarcy/1p2c_2p2c/CMakeLists.txt:5 
(dune_add_test)



Regards,
María.

*De:* Bernd Flemisch  
<mailto:be...@iws.uni-stuttgart.de>

*Enviado:* lunes, 16 de julio de 2018 11:56:19
*Para:* Maria Bonto; DuMuX User Forum
*Asunto:* Re: [DuMuX] Error while installing dumux
Ok, thank you. Apparently, the constructions that we do in the 
CMakeLists.txt of test/multidomain/boundary/stokesdarcy/1p_2p and 
test/multidomain/boundary/stokesdarcy/1p2c_2p2c result in problems on 
your Mac.


As a temporary workaround to get things running, it should be ok to 
comment/remove the line

add_subdirectory(stokesdarcy)
from test/multidomain/boundary/CMakeLists.txt, remove the folder 
build-cmake from your dumux directory and run the script again.


Meanwhile, we will try to fix the problem in the offending 
CMakeLists.txt.


Kind regards
Bernd

On 07/16/2018 11:45 AM, Maria Bonto wrote:


Dear Bernd,


I started again from the beginning but I still get the same errors.


Regards,


María.


*De:* Bernd Flemisch  
<mailto:be...@iws.uni-stuttgart.de>

*Enviado:* lunes, 16 de julio de 2018 11:34:33
*Para:* Maria Bonto; DuMuX User Forum
*Asunto:* Re: [DuMuX] Error while installing dumux
Can you maybe try to restart from scratch?

Kind regards
Bernd

On 07/16/2018 11:25 AM, Maria Bonto wrote:


I installed gfortran 4.9.2, but I still get errors. I attach the 
new console output.






*De:* Bernd Flemisch  
<mailto:be...@iws.uni-stuttgart.de>

*Enviado:* lunes, 16 de julio de 2018 10:50:26
*Para:* Maria Bonto
*Asunto:* Re: [DuMuX] Error while installing dumux
Ok, you need a Fortran compiler. On Mac, you might want to want to 
consider
https://scicomp.stackexchange.com/questions/2469/how-should-i-install-a-fortran-compiler-on-a-mac-os-x-10-x-x-4 


<https://scicomp.stackexchange.com/questions/2469/how-should-i-install-a-fortran-compiler-on-a-ma

Re: [DuMuX] Error while installing dumux

2018-07-16 Thread Maria Bonto

I did that. I didn't get any errors in this case.


Configuring done

-- Generating done

-- Build files have been written to: /Volumes/MARY/DuMuX/dumux/dumux/build-cmake

--- calling make for dumux ---

build directory: build-cmake

cmake --build . --

--- dumux done ---

--- done ---


De: Bernd Flemisch 
Enviado: lunes, 16 de julio de 2018 12:49:26
Para: Maria Bonto; DuMuX User Forum
Asunto: Re: [DuMuX] Error while installing dumux


Can you remove the line, then do a
cd /Volumes/MARY/DuMuX/dumux/
rm -rf dumux/build-cmake
./dune-common/bin/dunecontrol --opts=cmake.opts --only=dumux all
and see if that works?

Bernd

On 07/16/2018 12:33 PM, Maria Bonto wrote:

Dear Bernd,


I did what you suggested and I still get the same errors. After running the 
script again I saw that the folder is created again and also the line that I 
removed. I tried the same procedure several times but I still get the following 
errors:


CMake Error at 
/Volumes/MARY/DuMuX/dumux/dune-common/cmake/modules/DuneTestMacros.cmake:255 
(add_executable):

  add_executable cannot create target "test_stokes1pdarcy2pvertical" because

  another target with the same name already exists.  The existing target is

  an executable created in source directory

  "/Volumes/MARY/DuMuX/dumux/dumux/test/multidomain/boundary/stokesdarcy/1p_2p".

  See documentation for policy CMP0002 for more details.

Call Stack (most recent call first):

  test/multidomain/boundary/stokesdarcy/1p_2p/CMakeLists.txt:5 (dune_add_test)



CMake Error at 
/Volumes/MARY/DuMuX/dumux/dune-common/cmake/modules/DuneTestMacros.cmake:255 
(add_executable):

  add_executable cannot create target "test_stokes1p2cdarcy1p2chorizontal"

  because another target with the same name already exists.  The existing

  target is an executable created in source directory

  
"/Volumes/MARY/DuMuX/dumux/dumux/test/multidomain/boundary/stokesdarcy/1p2c_1p2c/horizontalflow".

  See documentation for policy CMP0002 for more details.

Call Stack (most recent call first):

  
test/multidomain/boundary/stokesdarcy/1p2c_1p2c/horizontalflow/CMakeLists.txt:5 
(dune_add_test)



CMake Error at 
/Volumes/MARY/DuMuX/dumux/dune-common/cmake/modules/DuneTestMacros.cmake:255 
(add_executable):

  add_executable cannot create target "test_stokes1p2cdarcy2p2chorizontal"

  because another target with the same name already exists.  The existing

  target is an executable created in source directory

  
"/Volumes/MARY/DuMuX/dumux/dumux/test/multidomain/boundary/stokesdarcy/1p2c_2p2c".

  See documentation for policy CMP0002 for more details.

Call Stack (most recent call first):

  test/multidomain/boundary/stokesdarcy/1p2c_2p2c/CMakeLists.txt:5 
(dune_add_test)

Regards,
María.

De: Bernd Flemisch 
<mailto:be...@iws.uni-stuttgart.de>
Enviado: lunes, 16 de julio de 2018 11:56:19
Para: Maria Bonto; DuMuX User Forum
Asunto: Re: [DuMuX] Error while installing dumux

Ok, thank you. Apparently, the constructions that we do in the CMakeLists.txt 
of test/multidomain/boundary/stokesdarcy/1p_2p and 
test/multidomain/boundary/stokesdarcy/1p2c_2p2c result in problems on your Mac.

As a temporary workaround to get things running, it should be ok to 
comment/remove the line
add_subdirectory(stokesdarcy)
from test/multidomain/boundary/CMakeLists.txt, remove the folder build-cmake 
from your dumux directory and run the script again.

Meanwhile, we will try to fix the problem in the offending CMakeLists.txt.

Kind regards
Bernd

On 07/16/2018 11:45 AM, Maria Bonto wrote:

Dear Bernd,


I started again from the beginning but I still get the same errors.


Regards,


María.


De: Bernd Flemisch 
<mailto:be...@iws.uni-stuttgart.de>
Enviado: lunes, 16 de julio de 2018 11:34:33
Para: Maria Bonto; DuMuX User Forum
Asunto: Re: [DuMuX] Error while installing dumux

Can you maybe try to restart from scratch?

Kind regards
Bernd

On 07/16/2018 11:25 AM, Maria Bonto wrote:

I installed gfortran 4.9.2, but I still get errors. I attach the new console 
output.





De: Bernd Flemisch 
<mailto:be...@iws.uni-stuttgart.de>
Enviado: lunes, 16 de julio de 2018 10:50:26
Para: Maria Bonto
Asunto: Re: [DuMuX] Error while installing dumux

Ok, you need a Fortran compiler. On Mac, you might want to want to consider
https://scicomp.stackexchange.com/questions/2469/how-should-i-install-a-fortran-compiler-on-a-mac-os-x-10-x-x-4
[https://cdn.sstatic.net/Sites/scicomp/img/apple-touch-i...@2.png?v=935a34102365]<https://scicomp.stackexchange.com/questions/2469/how-should-i-install-a-fortran-compiler-on-a-mac-os-x-10-x-x-4>

How should I install a Fortran compiler on a Mac? (OS X 10 
...<https://scicomp.stackexchange.com/questions/2469/how-should-i-install-a-fortran-compiler-on-a-mac-os-x-10-x-x-4>
scicomp.stackexchange.com
Related quest

Re: [DuMuX] Error while installing dumux

2018-07-16 Thread Bernd Flemisch

Can you remove the line, then do a
cd /Volumes/MARY/DuMuX/dumux/
rm -rf dumux/build-cmake
./dune-common/bin/dunecontrol --opts=cmake.opts --only=dumux all
and see if that works?

Bernd

On 07/16/2018 12:33 PM, Maria Bonto wrote:

Dear Bernd,

I did what you suggested and I still get the same errors. After
running the script again I saw that the folder is created again and
also the line that I removed. I tried the same procedure several times
but I still get the following errors:

CMake Error at
/Volumes/MARY/DuMuX/dumux/dune-common/cmake/modules/DuneTestMacros.cmake:255
(add_executable):

add_executable cannot create target "test_stokes1pdarcy2pvertical" because

another target with the same name already exists. The existing target is

an executable created in source directory

"/Volumes/MARY/DuMuX/dumux/dumux/test/multidomain/boundary/stokesdarcy/1p_2p".

See documentation for policy CMP0002 for more details.

Call Stack (most recent call first):

test/multidomain/boundary/stokesdarcy/1p_2p/CMakeLists.txt:5
(dune_add_test)

CMake Error at
/Volumes/MARY/DuMuX/dumux/dune-common/cmake/modules/DuneTestMacros.cmake:255
(add_executable):

add_executable cannot create target "test_stokes1p2cdarcy1p2chorizontal"

because another target with the same name already exists. The existing

target is an executable created in source directory

"/Volumes/MARY/DuMuX/dumux/dumux/test/multidomain/boundary/stokesdarcy/1p2c_1p2c/horizontalflow".

See documentation for policy CMP0002 for more details.

Call Stack (most recent call first):

test/multidomain/boundary/stokesdarcy/1p2c_1p2c/horizontalflow/CMakeLists.txt:5
(dune_add_test)

CMake Error at
/Volumes/MARY/DuMuX/dumux/dune-common/cmake/modules/DuneTestMacros.cmake:255
(add_executable):

add_executable cannot create target "test_stokes1p2cdarcy2p2chorizontal"

because another target with the same name already exists. The existing

target is an executable created in source directory

"/Volumes/MARY/DuMuX/dumux/dumux/test/multidomain/boundary/stokesdarcy/1p2c_2p2c".

See documentation for policy CMP0002 for more details.

Call Stack (most recent call first):

test/multidomain/boundary/stokesdarcy/1p2c_2p2c/CMakeLists.txt:5
(dune_add_test)

Regards,
María.

*De:* Bernd Flemisch
*Enviado:* lunes, 16 de julio de 2018 11:56:19
*Para:* Maria Bonto; DuMuX User Forum
*Asunto:* Re: [DuMuX] Error while installing dumux
Ok, thank you. Apparently, the constructions that we do in the
CMakeLists.txt of test/multidomain/boundary/stokesdarcy/1p_2p and
test/multidomain/boundary/stokesdarcy/1p2c_2p2c result in problems on
your Mac.

As a temporary workaround to get things running, it should be ok to
comment/remove the line

add_subdirectory(stokesdarcy)
from test/multidomain/boundary/CMakeLists.txt, remove the folder
build-cmake from your dumux directory and run the script again.

Meanwhile, we will try to fix the problem in the offending CMakeLists.txt.

Kind regards
Bernd

On 07/16/2018 11:45 AM, Maria Bonto wrote:

Dear Bernd,

I started again from the beginning but I still get the same errors.

Regards,

María.

*De:* Bernd Flemisch
<mailto:be...@iws.uni-stuttgart.de>

*Enviado:* lunes, 16 de julio de 2018 11:34:33
*Para:* Maria Bonto; DuMuX User Forum
*Asunto:* Re: [DuMuX] Error while installing dumux
Can you maybe try to restart from scratch?

Kind regards
Bernd

On 07/16/2018 11:25 AM, Maria Bonto wrote:

I installed gfortran 4.9.2, but I still get errors. I attach the new
console output.

*De:* Bernd Flemisch
<mailto:be...@iws.uni-stuttgart.de>

*Enviado:* lunes, 16 de julio de 2018 10:50:26
*Para:* Maria Bonto
*Asunto:* Re: [DuMuX] Error while installing dumux
Ok, you need a Fortran compiler. On Mac, you might want to want to
consider
https://scicomp.stackexchange.com/questions/2469/how-should-i-install-a-fortran-compiler-on-a-mac-os-x-10-x-x-4

<https://scicomp.stackexchange.com/questions/2469/how-should-i-install-a-fortran-compiler-on-a-mac-os-x-10-x-x-4>

How should I install a Fortran compiler on a Mac? (OS X 10 ...
<https://scicomp.stackexchange.com/questions/2469/how-should-i-install-a-fortran-compiler-on-a-mac-os-x-10-x-x-4>

scicomp.stackexchange.com
Related question: State of the Mac OS in Scientific Computing and
HPC A significant number of software packages in computational
science are written in Fortran, and Fortran isn't going away.

Kind regards
Bernd

On 07/16/2018 10:37 AM, Maria Bonto wrote:

Dear Bernd,

Attached please find a txt. file with the console messages after
running the installation script.

Regards,

María.

Re: [DuMuX] Error while installing dumux

2018-07-16 Thread Maria Bonto

Dear Bernd,

I did what you suggested and I still get the same errors. After running the
script again I saw that the folder is created again and also the line that I
removed. I tried the same procedure several times but I still get the following
errors:

CMake Error at
/Volumes/MARY/DuMuX/dumux/dune-common/cmake/modules/DuneTestMacros.cmake:255
(add_executable):

add_executable cannot create target "test_stokes1pdarcy2pvertical" because

another target with the same name already exists. The existing target is

an executable created in source directory

"/Volumes/MARY/DuMuX/dumux/dumux/test/multidomain/boundary/stokesdarcy/1p_2p".

See documentation for policy CMP0002 for more details.

Call Stack (most recent call first):

test/multidomain/boundary/stokesdarcy/1p_2p/CMakeLists.txt:5 (dune_add_test)

CMake Error at
/Volumes/MARY/DuMuX/dumux/dune-common/cmake/modules/DuneTestMacros.cmake:255
(add_executable):

add_executable cannot create target "test_stokes1p2cdarcy1p2chorizontal"

because another target with the same name already exists. The existing

target is an executable created in source directory

"/Volumes/MARY/DuMuX/dumux/dumux/test/multidomain/boundary/stokesdarcy/1p2c_1p2c/horizontalflow".

See documentation for policy CMP0002 for more details.

Call Stack (most recent call first):

test/multidomain/boundary/stokesdarcy/1p2c_1p2c/horizontalflow/CMakeLists.txt:5
(dune_add_test)

CMake Error at
/Volumes/MARY/DuMuX/dumux/dune-common/cmake/modules/DuneTestMacros.cmake:255
(add_executable):

add_executable cannot create target "test_stokes1p2cdarcy2p2chorizontal"

because another target with the same name already exists. The existing

target is an executable created in source directory

"/Volumes/MARY/DuMuX/dumux/dumux/test/multidomain/boundary/stokesdarcy/1p2c_2p2c".

See documentation for policy CMP0002 for more details.

Call Stack (most recent call first):

test/multidomain/boundary/stokesdarcy/1p2c_2p2c/CMakeLists.txt:5
(dune_add_test)

Regards,
María.

De: Bernd Flemisch
Enviado: lunes, 16 de julio de 2018 11:56:19
Para: Maria Bonto; DuMuX User Forum
Asunto: Re: [DuMuX] Error while installing dumux

Ok, thank you. Apparently, the constructions that we do in the CMakeLists.txt
of test/multidomain/boundary/stokesdarcy/1p_2p and
test/multidomain/boundary/stokesdarcy/1p2c_2p2c result in problems on your Mac.

As a temporary workaround to get things running, it should be ok to
comment/remove the line
add_subdirectory(stokesdarcy)
from test/multidomain/boundary/CMakeLists.txt, remove the folder build-cmake
from your dumux directory and run the script again.

Meanwhile, we will try to fix the problem in the offending CMakeLists.txt.

Kind regards
Bernd

On 07/16/2018 11:45 AM, Maria Bonto wrote:

Dear Bernd,

I started again from the beginning but I still get the same errors.

Regards,

María.

De: Bernd Flemisch
<mailto:be...@iws.uni-stuttgart.de>
Enviado: lunes, 16 de julio de 2018 11:34:33
Para: Maria Bonto; DuMuX User Forum
Asunto: Re: [DuMuX] Error while installing dumux

Can you maybe try to restart from scratch?

Kind regards
Bernd

On 07/16/2018 11:25 AM, Maria Bonto wrote:

I installed gfortran 4.9.2, but I still get errors. I attach the new console
output.

De: Bernd Flemisch
<mailto:be...@iws.uni-stuttgart.de>
Enviado: lunes, 16 de julio de 2018 10:50:26
Para: Maria Bonto
Asunto: Re: [DuMuX] Error while installing dumux

Ok, you need a Fortran compiler. On Mac, you might want to want to consider
https://scicomp.stackexchange.com/questions/2469/how-should-i-install-a-fortran-compiler-on-a-mac-os-x-10-x-x-4
[https://cdn.sstatic.net/Sites/scicomp/img/apple-touch-i...@2.png?v=935a34102365]<https://scicomp.stackexchange.com/questions/2469/how-should-i-install-a-fortran-compiler-on-a-mac-os-x-10-x-x-4>

How should I install a Fortran compiler on a Mac? (OS X 10
...<https://scicomp.stackexchange.com/questions/2469/how-should-i-install-a-fortran-compiler-on-a-mac-os-x-10-x-x-4>
scicomp.stackexchange.com
Related question: State of the Mac OS in Scientific Computing and HPC A
significant number of software packages in computational science are written in
Fortran, and Fortran isn't going away.

Kind regards
Bernd

On 07/16/2018 10:37 AM, Maria Bonto wrote:

Dear Bernd,

Attached please find a txt. file with the console messages after running the
installation script.

Regards,

María.

De: Bernd Flemisch
<mailto:be...@iws.uni-stuttgart.de>
Enviado: lunes, 16 de julio de 2018 10:28:20
Para: DuMuX User Forum; Maria Bonto
Asunto: Re: [DuMuX] Error while installing dumux

Hi Maria,

can you please also post the console output that you get from the install
script or from running dunecontrol directly?

Kind

Re: [DuMuX] Error while installing dumux

2018-07-16 Thread Bernd Flemisch

Ok, thank you. Apparently, the constructions that we do in the 
CMakeLists.txt of test/multidomain/boundary/stokesdarcy/1p_2p and 
test/multidomain/boundary/stokesdarcy/1p2c_2p2c result in problems on 
your Mac.


As a temporary workaround to get things running, it should be ok to 
comment/remove the line

add_subdirectory(stokesdarcy)
from test/multidomain/boundary/CMakeLists.txt, remove the folder 
build-cmake from your dumux directory and run the script again.


Meanwhile, we will try to fix the problem in the offending CMakeLists.txt.

Kind regards
Bernd

On 07/16/2018 11:45 AM, Maria Bonto wrote:


Dear Bernd,


I started again from the beginning but I still get the same errors.


Regards,


María.


*De:* Bernd Flemisch 
*Enviado:* lunes, 16 de julio de 2018 11:34:33
*Para:* Maria Bonto; DuMuX User Forum
*Asunto:* Re: [DuMuX] Error while installing dumux
Can you maybe try to restart from scratch?

Kind regards
Bernd

On 07/16/2018 11:25 AM, Maria Bonto wrote:


I installed gfortran 4.9.2, but I still get errors. I attach the new 
console output.






*De:* Bernd Flemisch  
<mailto:be...@iws.uni-stuttgart.de>

*Enviado:* lunes, 16 de julio de 2018 10:50:26
*Para:* Maria Bonto
*Asunto:* Re: [DuMuX] Error while installing dumux
Ok, you need a Fortran compiler. On Mac, you might want to want to 
consider
https://scicomp.stackexchange.com/questions/2469/how-should-i-install-a-fortran-compiler-on-a-mac-os-x-10-x-x-4 


<https://scicomp.stackexchange.com/questions/2469/how-should-i-install-a-fortran-compiler-on-a-mac-os-x-10-x-x-4>

How should I install a Fortran compiler on a Mac? (OS X 10 ... 
<https://scicomp.stackexchange.com/questions/2469/how-should-i-install-a-fortran-compiler-on-a-mac-os-x-10-x-x-4>

scicomp.stackexchange.com
Related question: State of the Mac OS in Scientific Computing and HPC 
A significant number of software packages in computational science 
are written in Fortran, and Fortran isn't going away.





Kind regards
Bernd

On 07/16/2018 10:37 AM, Maria Bonto wrote:


Dear Bernd,


Attached please find a txt. file with the console messages after 
running the installation script.



Regards,

María.



*De:* Bernd Flemisch  
<mailto:be...@iws.uni-stuttgart.de>

*Enviado:* lunes, 16 de julio de 2018 10:28:20
*Para:* DuMuX User Forum; Maria Bonto
*Asunto:* Re: [DuMuX] Error while installing dumux
Hi Maria,

can you please also post the console output that you get from the 
install script or from running dunecontrol directly?


Kind regards
Bernd

On 07/16/2018 10:13 AM, Maria Bonto wrote:


Dear Sir/Madam,


I was trying to install dumux on a Mac OS X 10.10 for the dumux 
course but I get the following error: failed to build the dune 
libraries.



I am attaching the error log file I get.


Thank you in advance.


Best regards,

María.



___
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<mailto:Dumux@listserv.uni-stuttgart.de>

https://listserv.uni-stuttgart.de/mailman/listinfo/dumux


--
___

Bernd Flemisch phone: +49 711 685 69162
IWS, Universität Stuttgart fax:   +49 711 685 60430
Pfaffenwaldring 61email:be...@iws.uni-stuttgart.de 
<mailto:be...@iws.uni-stuttgart.de>
D-70569 Stuttgarturl:www.hydrosys.uni-stuttgart.de 
<http://www.hydrosys.uni-stuttgart.de>
___


--
___

Bernd Flemisch phone: +49 711 685 69162
IWS, Universität Stuttgart fax:   +49 711 685 60430
Pfaffenwaldring 61email:be...@iws.uni-stuttgart.de 
<mailto:be...@iws.uni-stuttgart.de>
D-70569 Stuttgarturl:www.hydrosys.uni-stuttgart.de 
<http://www.hydrosys.uni-stuttgart.de>
___


--
___

Bernd Flemisch phone: +49 711 685 69162
IWS, Universität Stuttgart fax:   +49 711 685 60430
Pfaffenwaldring 61email:be...@iws.uni-stuttgart.de 
<mailto:be...@iws.uni-stuttgart.de>
D-70569 Stuttgarturl:www.hydrosys.uni-stuttgart.de 
<http://www.hydrosys.uni-stuttgart.de>
___


--
___

Bernd Flemisch phone: +49 711 685 69162
IWS, Universität Stuttgart fax:   +49 711 685 60430
Pfaffenwaldring 61email: be...@iws.uni-stuttgart.

Re: [DuMuX] Error while installing dumux

2018-07-16 Thread Maria Bonto

Dear Bernd,


I started again from the beginning but I still get the same errors.


Regards,


María.


De: Bernd Flemisch 
Enviado: lunes, 16 de julio de 2018 11:34:33
Para: Maria Bonto; DuMuX User Forum
Asunto: Re: [DuMuX] Error while installing dumux

Can you maybe try to restart from scratch?

Kind regards
Bernd

On 07/16/2018 11:25 AM, Maria Bonto wrote:

I installed gfortran 4.9.2, but I still get errors. I attach the new console 
output.





De: Bernd Flemisch 
<mailto:be...@iws.uni-stuttgart.de>
Enviado: lunes, 16 de julio de 2018 10:50:26
Para: Maria Bonto
Asunto: Re: [DuMuX] Error while installing dumux

Ok, you need a Fortran compiler. On Mac, you might want to want to consider
https://scicomp.stackexchange.com/questions/2469/how-should-i-install-a-fortran-compiler-on-a-mac-os-x-10-x-x-4
[https://cdn.sstatic.net/Sites/scicomp/img/apple-touch-i...@2.png?v=935a34102365]<https://scicomp.stackexchange.com/questions/2469/how-should-i-install-a-fortran-compiler-on-a-mac-os-x-10-x-x-4>

How should I install a Fortran compiler on a Mac? (OS X 10 
...<https://scicomp.stackexchange.com/questions/2469/how-should-i-install-a-fortran-compiler-on-a-mac-os-x-10-x-x-4>
scicomp.stackexchange.com
Related question: State of the Mac OS in Scientific Computing and HPC A 
significant number of software packages in computational science are written in 
Fortran, and Fortran isn't going away.




Kind regards
Bernd

On 07/16/2018 10:37 AM, Maria Bonto wrote:

Dear Bernd,


Attached please find a txt. file with the console messages after running the 
installation script.


Regards,

María.



De: Bernd Flemisch 
<mailto:be...@iws.uni-stuttgart.de>
Enviado: lunes, 16 de julio de 2018 10:28:20
Para: DuMuX User Forum; Maria Bonto
Asunto: Re: [DuMuX] Error while installing dumux

Hi Maria,

can you please also post the console output that you get from the install 
script or from running dunecontrol directly?

Kind regards
Bernd

On 07/16/2018 10:13 AM, Maria Bonto wrote:

Dear Sir/Madam,


I was trying to install dumux on a Mac OS X 10.10 for the dumux course but I 
get the following error: failed to build the dune libraries.


I am attaching the error log file I get.


Thank you in advance.


Best regards,

María.



___
Dumux mailing list
Dumux@listserv.uni-stuttgart.de<mailto:Dumux@listserv.uni-stuttgart.de>
https://listserv.uni-stuttgart.de/mailman/listinfo/dumux



--
___

Bernd Flemisch phone: +49 711 685 69162
IWS, Universität Stuttgart fax:   +49 711 685 60430
Pfaffenwaldring 61email: 
be...@iws.uni-stuttgart.de<mailto:be...@iws.uni-stuttgart.de>
D-70569 Stuttgarturl: 
www.hydrosys.uni-stuttgart.de<http://www.hydrosys.uni-stuttgart.de>
___



--
___

Bernd Flemisch phone: +49 711 685 69162
IWS, Universität Stuttgart fax:   +49 711 685 60430
Pfaffenwaldring 61email: 
be...@iws.uni-stuttgart.de<mailto:be...@iws.uni-stuttgart.de>
D-70569 Stuttgarturl: 
www.hydrosys.uni-stuttgart.de<http://www.hydrosys.uni-stuttgart.de>
___



--
___

Bernd Flemisch phone: +49 711 685 69162
IWS, Universität Stuttgart fax:   +49 711 685 60430
Pfaffenwaldring 61email: 
be...@iws.uni-stuttgart.de<mailto:be...@iws.uni-stuttgart.de>
D-70569 Stuttgarturl: 
www.hydrosys.uni-stuttgart.de<http://www.hydrosys.uni-stuttgart.de>
___

___
Dumux mailing list
Dumux@listserv.uni-stuttgart.de
https://listserv.uni-stuttgart.de/mailman/listinfo/dumux

Re: [DuMuX] Error while installing dumux

2018-07-16 Thread Bernd Flemisch


Can you maybe try to restart from scratch?

Kind regards
Bernd

On 07/16/2018 11:25 AM, Maria Bonto wrote:


I installed gfortran 4.9.2, but I still get errors. I attach the new 
console output.






*De:* Bernd Flemisch 
*Enviado:* lunes, 16 de julio de 2018 10:50:26
*Para:* Maria Bonto
*Asunto:* Re: [DuMuX] Error while installing dumux
Ok, you need a Fortran compiler. On Mac, you might want to want to 
consider
https://scicomp.stackexchange.com/questions/2469/how-should-i-install-a-fortran-compiler-on-a-mac-os-x-10-x-x-4 


<https://scicomp.stackexchange.com/questions/2469/how-should-i-install-a-fortran-compiler-on-a-mac-os-x-10-x-x-4>

How should I install a Fortran compiler on a Mac? (OS X 10 ... 
<https://scicomp.stackexchange.com/questions/2469/how-should-i-install-a-fortran-compiler-on-a-mac-os-x-10-x-x-4>

scicomp.stackexchange.com
Related question: State of the Mac OS in Scientific Computing and HPC 
A significant number of software packages in computational science are 
written in Fortran, and Fortran isn't going away.





Kind regards
Bernd

On 07/16/2018 10:37 AM, Maria Bonto wrote:


Dear Bernd,


Attached please find a txt. file with the console messages after 
running the installation script.



Regards,

María.



*De:* Bernd Flemisch  
<mailto:be...@iws.uni-stuttgart.de>

*Enviado:* lunes, 16 de julio de 2018 10:28:20
*Para:* DuMuX User Forum; Maria Bonto
*Asunto:* Re: [DuMuX] Error while installing dumux
Hi Maria,

can you please also post the console output that you get from the 
install script or from running dunecontrol directly?


Kind regards
Bernd

On 07/16/2018 10:13 AM, Maria Bonto wrote:


Dear Sir/Madam,


I was trying to install dumux on a Mac OS X 10.10 for the dumux 
course but I get the following error: failed to build the dune 
libraries.



I am attaching the error log file I get.


Thank you in advance.


Best regards,

María.



___
Dumux mailing list
Dumux@listserv.uni-stuttgart.de <mailto:Dumux@listserv.uni-stuttgart.de>
https://listserv.uni-stuttgart.de/mailman/listinfo/dumux


--
___

Bernd Flemisch phone: +49 711 685 69162
IWS, Universität Stuttgart fax:   +49 711 685 60430
Pfaffenwaldring 61email:be...@iws.uni-stuttgart.de 
<mailto:be...@iws.uni-stuttgart.de>
D-70569 Stuttgarturl:www.hydrosys.uni-stuttgart.de 
<http://www.hydrosys.uni-stuttgart.de>
___


--
___

Bernd Flemisch phone: +49 711 685 69162
IWS, Universität Stuttgart fax:   +49 711 685 60430
Pfaffenwaldring 61email:be...@iws.uni-stuttgart.de 
<mailto:be...@iws.uni-stuttgart.de>
D-70569 Stuttgarturl:www.hydrosys.uni-stuttgart.de 
<http://www.hydrosys.uni-stuttgart.de>
___


--
___

Bernd Flemisch phone: +49 711 685 69162
IWS, Universität Stuttgart fax:   +49 711 685 60430
Pfaffenwaldring 61email: be...@iws.uni-stuttgart.de
D-70569 Stuttgarturl: www.hydrosys.uni-stuttgart.de
___

___
Dumux mailing list
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https://listserv.uni-stuttgart.de/mailman/listinfo/dumux

Re: [DuMuX] Error while installing dumux

2018-07-16 Thread Bernd Flemisch


Hi Maria,

can you please also post the console output that you get from the 
install script or from running dunecontrol directly?


Kind regards
Bernd

On 07/16/2018 10:13 AM, Maria Bonto wrote:


Dear Sir/Madam,


I was trying to install dumux on a Mac OS X 10.10 for the dumux course 
but I get the following error: failed to build the dune libraries.



I am attaching the error log file I get.


Thank you in advance.


Best regards,

María.



___
Dumux mailing list
Dumux@listserv.uni-stuttgart.de
https://listserv.uni-stuttgart.de/mailman/listinfo/dumux


--
___

Bernd Flemisch phone: +49 711 685 69162
IWS, Universität Stuttgart fax:   +49 711 685 60430
Pfaffenwaldring 61email: be...@iws.uni-stuttgart.de
D-70569 Stuttgarturl: www.hydrosys.uni-stuttgart.de
___

___
Dumux mailing list
Dumux@listserv.uni-stuttgart.de
https://listserv.uni-stuttgart.de/mailman/listinfo/dumux

[DuMuX] Error while installing dumux

2018-07-16 Thread Maria Bonto

Dear Sir/Madam,


I was trying to install dumux on a Mac OS X 10.10 for the dumux course but I 
get the following error: failed to build the dune libraries.


I am attaching the error log file I get.


Thank you in advance.


Best regards,

María.


CMakeError.log
Description: CMakeError.log


CMakeOutput.log
Description: CMakeOutput.log
___
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Re: [DuMux] Error in installing Dumux

[DuMux] Error in installing Dumux

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