[Fink-beginners] Re: Installing pymol fails
[EMAIL PROTECTED] said: I am installing 'pymol' but it fails with the message below. --- echo /^LINKPATH=/s%=.*%= % sedscript echo /^BASELIB=/s%=.*%= % sedscript echo /^BASESETUP=/s%=.*%=% sedscript sed -f sedscript ./Makefile.pre.in Makefile.pre cp ./Setup.in Setup /sw/lib/python2.3/config/makesetup \ -m Makefile.pre -c /sw/lib/python2.3/config/config.c.in Setup -n /sw/lib/python2.3/config/Setup.config /sw/lib/python2.3/config/Setup.local /sw/lib/python2.3/config/Setup make -f Makefile do-it-again /sw/lib/python2.3/config/makesetup \ -m Makefile.pre -c /sw/lib/python2.3/config/config.c.in Setup -n /sw/lib/python2.3/config/Setup.config /sw/lib/python2.3/config/Setup.local /sw/lib/python2.3/config/Setup cd modules;make gcc -DNDEBUG -g -O3 -Wall -Wstrict-prototypes -I/sw/include/python2.3 -I/sw/include/python2.3 @DEFS@ -I/sw/include -c ././ExtensionClass.c -o ./ExtensionClass.o gcc: cannot specify -o with -c or -S and multiple compilations Looks like @DEFS@ isn't being properly substituted. make[2]: *** [ExtensionClass.o] Error 1 make[1]: *** [make-modules] Error 2 make: *** [.contrib] Error 2 ### execution of make failed, exit code 2 Failed: compiling pymol-0.86-14 failed dan -- Daniel Macks [EMAIL PROTECTED] http://www.netspace.org/~dmacks --- The SF.Net email is sponsored by EclipseCon 2004 Premiere Conference on Open Tools Development and Integration See the breadth of Eclipse activity. February 3-5 in Anaheim, CA. http://www.eclipsecon.org/osdn ___ Fink-beginners mailing list [EMAIL PROTECTED] https://lists.sourceforge.net/lists/listinfo/fink-beginners
Re: [Fink-beginners] Installing pymol fails
[EMAIL PROTECTED] said: I am installing 'pymol' but it fails with the message below. [within contrib/] cd modules;make gcc -DNDEBUG -g -O3 -Wall -Wstrict-prototypes -I/sw/include/python2.3 -I/sw/include/python2.3 @DEFS@ -I/sw/include -c ././ExtensionClass.c -o ./ExtensionClass.o gcc: cannot specify -o with -c or -S and multiple compilations Looks like @DEFS@ isn't being properly substituted. Okay, it appears the problem is that the Depends for pymol all mention python2.2-specific things and AFAICT building this pacakge really does require python2.2, but then during the compile it uses whatever python /sw/bin/python is, which could be (as on your system) python2.3. I'm cc-ing the package maintainer to see if he feels like fixing this, or wants me to. dan -- Daniel Macks [EMAIL PROTECTED] http://www.netspace.org/~dmacks -- Daniel Macks [EMAIL PROTECTED] http://www.netspace.org/~dmacks --- The SF.Net email is sponsored by EclipseCon 2004 Premiere Conference on Open Tools Development and Integration See the breadth of Eclipse activity. February 3-5 in Anaheim, CA. http://www.eclipsecon.org/osdn ___ Fink-beginners mailing list [EMAIL PROTECTED] https://lists.sourceforge.net/lists/listinfo/fink-beginners
[Fink-beginners] Re: Unable to update bzip2, iconv, others
Matt Crawford said: [...] Finding prebound objects... Bad switch -d Failed: can't make /sw/src/root-libiconv-1.9.1-11/sw/var/lib/fink/prebound/files for libiconv: No such file or directory At that point, fink seems to be trying to run: install -d -m 755 /sw/src/root-libiconv-1.9.1-11/sw/var/lib/fink/prebound/files but the 'install' command it's finding doesn't support the -d flag. That's weird, since I think all the usual variants of the standard install program support that flag. And even weirder, the error messages they give for an invalid flag has a different wording. What is your PATH, which components have an 'install' executable, and are any of them perhaps not part of OS X or fink? dan -- Daniel Macks [EMAIL PROTECTED] http://www.netspace.org/~dmacks --- SF.Net is sponsored by: Speed Start Your Linux Apps Now. Build and deploy apps Web services for Linux with a free DVD software kit from IBM. Click Now! http://ads.osdn.com/?ad_id=1356alloc_id=3438op=click ___ Fink-beginners mailing list [EMAIL PROTECTED] https://lists.sourceforge.net/lists/listinfo/fink-beginners
[Fink-beginners] Re: Unable to update bzip2, iconv, others
Matt Crawford said: On Feb 26, 2004, at 4:05 PM, Daniel Macks wrote: Finding prebound objects... Bad switch -d Failed: can't make /sw/src/root-libiconv-1.9.1-11/sw/var/lib/fink/prebound/files for libiconv: No such file or directory At that point, fink seems to be trying to run: install -d -m 755 [that /sw.../files path] but the 'install' command it's finding doesn't support the -d flag. That's weird, since I think all the usual variants of the standard install program support that flag. And even weirder, the error messages they give for an invalid flag has a different wording. What is your PATH, which components have an 'install' executable, and are any of them perhaps not part of OS X or fink? Ahhh! src 596# (IFS=:$IFS; for d in $PATH; do if [ -f $d/install ]; then ls -l $d/install; fi; done; ) -rwxr-xr-x 1 root wheel 27964 23 Oct 23:13 /Library/OpenAFS/tools/bin/install -r-xr-xr-x 1 root wheel 23692 24 Sep 01:47 /usr/bin/install src 597# /Library/OpenAFS/tools/bin/install -d Bad switch -d Juggle PATH and it works fine. Thanks! Glad you've gotten it working. I just patched fink (in CVS) to use a native mkdir routine instead of system(install -d), so users of future versions of fink won't have to deal with this issue. dan -- Daniel Macks [EMAIL PROTECTED] http://www.netspace.org/~dmacks --- SF.Net is sponsored by: Speed Start Your Linux Apps Now. Build and deploy apps Web services for Linux with a free DVD software kit from IBM. Click Now! http://ads.osdn.com/?ad_id=1356alloc_id=3438op=click ___ Fink-beginners mailing list [EMAIL PROTECTED] https://lists.sourceforge.net/lists/listinfo/fink-beginners
Re: [Fink-devel] Type: NoSource bug (Re: [Fink-beginners] installing KDE-Again!-)
On Fri, May 07, 2004 at 03:15:38PM +0200, Martin Costabel wrote: To whoever did this: The Type: field apparently changed from being case insensitive to case sensitive some time ago. There are still quite a few packages in the 10.2-gcc3.3 tree that have Type: NoSource. This is not respected any more, so that fink tries to download a non-existent foo.tar.gz tarball. Please either make this case insensitive again or fix all the packages that still have this. Maybe fields other than Type: are concerned, too? I think this was my doing going into the 0.20.0 release. Was fixed (convert all Type major values to all lowercase) in CVS HEAD several weeks ago, but then never back-ported to the 0.20 branch until a few minutes ago. The situation as you found was that all Type values were suddenly treated in their exact case. I just checked all of 10.2-gcc3.3 and 10.3 for any capitalized Types, and all I found was NoSource in autoconf25 and automake in 10.2-gcc3.3 (both stable and unstable). Which I just lowercase-ified. dan -- Daniel Macks [EMAIL PROTECTED] http://www.netspace.org/~dmacks --- This SF.Net email is sponsored by Sleepycat Software Learn developer strategies Cisco, Motorola, Ericsson Lucent use to deliver higher performing products faster, at low TCO. http://www.sleepycat.com/telcomwpreg.php?From=osdnemail3 ___ Fink-beginners mailing list [EMAIL PROTECTED] https://lists.sourceforge.net/lists/listinfo/fink-beginners
[Fink-beginners] Re: fink 23.5 on 10.2-gcc3.3
[forgot to send to list] In gmane.os.apple.fink.beginners, you said: Since selfupdate wasn't working on my 10.2-gcc3.3 computer at work (on which I only yesterday enabled the unstable trees -- and on which I had a working stable-tree kde installation yesterday), I tried to update-all. This didn't work because the first thing it tried to update was fink Anyhow, how do I beat this one? (My guess is that it depends on something that is not installed, but, hey, I'm a beginner!) Sounds like you're right on with the diagnosis though:) Try installing test-simple-pm560 (assuming '/usr/bin/perl -v' reports itself as v5.6.0). Then see if you can update the fink pkg. dan -- Daniel Macks [EMAIL PROTECTED] http://www.netspace.org/~dmacks --- SF email is sponsored by - The IT Product Guide Read honest candid reviews on hundreds of IT Products from real users. Discover which products truly live up to the hype. Start reading now. http://productguide.itmanagersjournal.com/ ___ Fink-beginners mailing list Fink-beginners@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/fink-beginners
Re: [Fink-beginners] Re: fink 23.5 on 10.2-gcc3.3
On Thu, Dec 23, 2004 at 09:28:45AM +0100, Martin Costabel wrote: Martin Costabel wrote: [] But thirdly, the absence of Test::More does not (or did not for me, in any case) prevent the complete installation of the new fink. It was not treated as an error. I guess the errors that have been observed come up when some version of test-simple-pmXXX is installed, but XXX does not correspond to the installed perl version? I have no idea. I based my suggestion on the observation that all the failed test suites use a Test::More invocation that is not supported by some older versions of some of the Test::* modules but I can't remember which. Nor can I remember which test-*-pm(560) supplies the right combination. Other perl-module packages use the same construct, so user will likely wind up installing these test-* eventually anyway. OTOH, we may as well fix the fink test...no reason for us to cause problems even if everyone else does. dan -- Daniel Macks [EMAIL PROTECTED] http://www.netspace.org/~dmacks --- SF email is sponsored by - The IT Product Guide Read honest candid reviews on hundreds of IT Products from real users. Discover which products truly live up to the hype. Start reading now. http://productguide.itmanagersjournal.com/ ___ Fink-beginners mailing list Fink-beginners@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/fink-beginners
Re: [Fink-beginners] lyx-qt 1.5.0-1 installation fails
Daniel E. Macks said: Mark Reglewski [EMAIL PROTECTED] said: I am trying to install lyx from source and the installation fails. This is the last line of compiler output and the error message: Would also be interesting to see the contents of the config.log file (will have more details about *why* it is yes/no)...you can email it privately or post a file on a website so you don't fill this mailing list with a giant thing. Mark sent me config.log, in which I see: configure:29785: checking for stpcpy configure:29841: gcc -o conftest -O2 -I/sw/include -I/usr/X11/include -framework Carbon -framework OpenGL -framework AGL -framework QuickTime -L/sw/lib conftest.c -lm -liconv -lz -L/usr/X11/lib -R/usr/X11/lib -lX11 5 conftest.c:81: warning: conflicting types for built-in function 'stpcpy' ld: cycle in dylib re-exports with /usr/X11/lib/libGL.dylib collect2: ld returned 1 exit status So the old version would probably build with the usual SetLDFLAGS: -dylib_file game (either the raw or the -Wl, form). No Leopard here to test it. dan -- Daniel Macks [EMAIL PROTECTED] http://www.netspace.org/~dmacks - SF.Net email is sponsored by: The Future of Linux Business White Paper from Novell. From the desktop to the data center, Linux is going mainstream. Let it simplify your IT future. http://altfarm.mediaplex.com/ad/ck/8857-50307-18918-4 ___ Fink-beginners mailing list Fink-beginners@lists.sourceforge.net http://news.gmane.org/gmane.os.apple.fink.beginners
[Fink-beginners] Fwd: gnome update in the stable tree
Forwarded message from David R. Morrison [EMAIL PROTECTED]: Last night, the massive gnome update which has been in process for many months was merged into fink's unstable tree. This is well tested, and updates by users appear to be going fairly smoothly. Today, we will merge the gnome update into the stable tree. Because we have been unable to test the dependencies of these new packages in the stable tree in advance, users can expect the stable tree to be not so stable during the next few weeks, while the bugs get worked out. If you are eager to start using this massive gnome update immediately, we suggest that you switch to the unstable tree. If not, we suggest that you hold off running fink selfupdate for a while (perhaps a week or two) until things have again stabilized. Watch this list for progress reports. -- Dave - This SF.Net email is sponsored by the Moblin Your Move Developer's challenge Build the coolest Linux based applications with Moblin SDK win great prizes Grand prize is a trip for two to an Open Source event anywhere in the world http://moblin-contest.org/redirect.php?banner_id=100url=/ ___ Fink-beginners mailing list Fink-beginners@lists.sourceforge.net http://news.gmane.org/gmane.os.apple.fink.beginners
Re: [Fink-beginners] Problem compiling libx264-57-shlibs
On Tue, Feb 03, 2009 at 08:54:12AM +0100, Martin Costabel wrote: Martin Costabel wrote: Daniel E. Macks wrote: [] Wonder if there are some important env vars getting nuked by sudo (maybe XDG_* to locate some mimetype data-files)? Try: sudo -s . /sw/bin/init.sh ./test_gio_mime /sw/share/zenmap/pixmaps/radialnet/wireless.png Yes, it is the env var XDG_DATA_DIRS. Set it to /sw/share and it works, set it to and it doesn't. The file that needs to be found appears to be /sw/share/mime/mime.cache. All this does not explain, of course, why the code in gtk+2-2.14.7-2 is not working. To clarify my response: This observation (works / doesn't work) concerns the test_gio_mime program and also the *patched* version of gtk+2-shlibs with Ian Allison's patch for gdk-pixbuf/gdk-pixbuf-io.c. It does not concern the unpatched gtk+2-shlibs-2.14.7-2 package that is still in Fink. This one is still broken, independent of those env variables. We worked a bit on #fink last night, and found that the variables appear to be passed correctly into the libx264-57 build. We also found that the build-bug in that package was reproduced on a ppc machine, which rules out endian while reading file contents (for analysis vs the mime database or whatever). So now we're down to mime database couldn't be loaded. I think there are source files that are cached and the cache is used at runtime, so either the data files are missing or they aren't cached properly. On the machines where the build fails, is the shared-mime-info package installed? dan -- Daniel Macks dma...@netspace.org http://www.netspace.org/~dmacks -- Create and Deploy Rich Internet Apps outside the browser with Adobe(R)AIR(TM) software. With Adobe AIR, Ajax developers can use existing skills and code to build responsive, highly engaging applications that combine the power of local resources and data with the reach of the web. Download the Adobe AIR SDK and Ajax docs to start building applications today-http://p.sf.net/sfu/adobe-com ___ Fink-beginners mailing list Fink-beginners@lists.sourceforge.net http://news.gmane.org/gmane.os.apple.fink.beginners
Re: [Fink-beginners] Problem compiling libx264-57-shlibs
On Tue, Feb 03, 2009 at 11:11:14AM -0500, Alexander Hansen wrote: Daniel Macks wrote: On Tue, Feb 03, 2009 at 08:54:12AM +0100, Martin Costabel wrote: Martin Costabel wrote: Daniel E. Macks wrote: [] Wonder if there are some important env vars getting nuked by sudo (maybe XDG_* to locate some mimetype data-files)? Try: sudo -s . /sw/bin/init.sh ./test_gio_mime /sw/share/zenmap/pixmaps/radialnet/wireless.png Yes, it is the env var XDG_DATA_DIRS. Set it to /sw/share and it works, set it to and it doesn't. The file that needs to be found appears to be /sw/share/mime/mime.cache. All this does not explain, of course, why the code in gtk+2-2.14.7-2 is not working. To clarify my response: This observation (works / doesn't work) concerns the test_gio_mime program and also the *patched* version of gtk+2-shlibs with Ian Allison's patch for gdk-pixbuf/gdk-pixbuf-io.c. It does not concern the unpatched gtk+2-shlibs-2.14.7-2 package that is still in Fink. This one is still broken, independent of those env variables. We worked a bit on #fink last night, and found that the variables appear to be passed correctly into the libx264-57 build. We also found that the build-bug in that package was reproduced on a ppc machine, which rules out endian while reading file contents (for analysis vs the mime database or whatever). So now we're down to mime database couldn't be loaded. I think there are source files that are cached and the cache is used at runtime, so either the data files are missing or they aren't cached properly. On the machines where the build fails, is the shared-mime-info package installed? dan For libx264-57-shlibs, shared-mime-info has to be installed, since it's in the dep tree for gtk+2-shlibs, which in turn is in the build-dep tree for libx264-shlibs. That doesn't guarantee against some problem in the installation, of course... Yup. libx264-57-shlibs is a fairly old package, so it only specifies dependencies on older versions of the gnome packages. Possible that gtk+2-shlibs:Depends:shared-mime-info was only added recently I guess. dan -- Daniel Macks dma...@netspace.org http://www.netspace.org/~dmacks -- Create and Deploy Rich Internet Apps outside the browser with Adobe(R)AIR(TM) software. With Adobe AIR, Ajax developers can use existing skills and code to build responsive, highly engaging applications that combine the power of local resources and data with the reach of the web. Download the Adobe AIR SDK and Ajax docs to start building applications today-http://p.sf.net/sfu/adobe-com ___ Fink-beginners mailing list Fink-beginners@lists.sourceforge.net http://news.gmane.org/gmane.os.apple.fink.beginners
Re: [Fink-beginners] phase compiling: msmtp-ssl-1.4.17-1004 failed
On Tue, 02 Oct 2012 15:13:06 -0400, Hanspeter Niederstrasser f...@snaggledworks.com wrote: On 10/2/2012 7:59 AM, Andrew Buckeridge wrote: Did fink self-update and then fink update-all, but it failed. See attached. gcc -std=gnu99 -DHAVE_CONFIG_H -DSYSCONFDIR=\/sw/etc\ -DLOCALEDIR=\/sw/share/locale\ -I. -I.. -I../gnulib -I../gnulib -I/sw/include -g -O2 -MT tls.o -MD -MP -MF .deps/tls.Tpo -c -o tls.o tls.c tls.c: In function 'tls_check_cert': tls.c:816: error: 'STACK' undeclared (first use in this function) tls.c:816: error: (Each undeclared identifier is reported only once tls.c:816: error: for each function it appears in.) tls.c:816: error: 'subj_alt_names' undeclared (first use in this function) tls.c: In function 'tls_init': tls.c:1100: warning: assignment discards qualifiers from pointer target type I can confirm this on 10.6/i386 (no other combo tested). msmtp-ssl now uses openssl100-dev. If I downgrade to openssl098-dev, the build succeeds. Dan, you committed the update to openssl100. Did it work for you? Worked for me at the time. STACK looks like it was deprecated a while ago but maybe still existed in older openssl100 versions? I pushed an upstream patch to tls.c and now it compiles for me again (tested on 10.6/i386 and 10.7). There is a newer upstream release but it adds a lot of new things (like optional gnome/glib use?) so I didn't push it because I'm not maintainer. He might also want to address the lack of swappability (seems like the msmtp and msmtp-ssl variants should be able to displace each other using Conflicts/Replaces tags). dan -- Daniel Macks dma...@netspace.org -- Don't let slow site performance ruin your business. Deploy New Relic APM Deploy New Relic app performance management and know exactly what is happening inside your Ruby, Python, PHP, Java, and .NET app Try New Relic at no cost today and get our sweet Data Nerd shirt too! http://p.sf.net/sfu/newrelic-dev2dev ___ Fink-beginners mailing list Fink-beginners@lists.sourceforge.net List archive: http://news.gmane.org/gmane.os.apple.fink.beginners Subscription management: https://lists.sourceforge.net/lists/listinfo/fink-beginners
Re: [Fink-beginners] phase compiling: msmtp-ssl-1.4.17-1004 failed
I have confirmation from another user that it *did* now build successfully. What version of this package are you using? If it's 1.4.17-1004 rather than 1.4.17-1005, your selfupdate did not yet pick up the latest fixes. dan On Wed, 3 Oct 2012 12:47:45 +1000, Andrew Buckeridge andr...@bgc.com.au wrote: Did selfupdate, but build of msmtp-ssl still failed due to change in API of openssl100-dev which is apparently now fixed upstream. If API is deprecated then msmtp-ssl could just depend on old openssl098-dev. Any security or other show stoppers with openssl098-dev? On Tue, 02 Oct 2012 17:05:44 -0400 Daniel Macks dma...@netspace.org wrote: On Tue, 02 Oct 2012 15:13:06 -0400, Hanspeter Niederstrasser f...@snaggledworks.com wrote: On 10/2/2012 7:59 AM, Andrew Buckeridge wrote: Did fink self-update and then fink update-all, but it failed. See attached. gcc -std=gnu99 -DHAVE_CONFIG_H -DSYSCONFDIR=\/sw/etc\ -DLOCALEDIR=\/sw/share/locale\ -I. -I.. -I../gnulib -I../gnulib -I/sw/include -g -O2 -MT tls.o -MD -MP -MF .deps/tls.Tpo -c -o tls.o tls.c tls.c: In function 'tls_check_cert': tls.c:816: error: 'STACK' undeclared (first use in this function) tls.c:816: error: (Each undeclared identifier is reported only once tls.c:816: error: for each function it appears in.) tls.c:816: error: 'subj_alt_names' undeclared (first use in this function) tls.c: In function 'tls_init': tls.c:1100: warning: assignment discards qualifiers from pointer target type I can confirm this on 10.6/i386 (no other combo tested). msmtp-ssl now uses openssl100-dev. If I downgrade to openssl098-dev, the build succeeds. Dan, you committed the update to openssl100. Did it work for you? Worked for me at the time. STACK looks like it was deprecated a while ago but maybe still existed in older openssl100 versions? I pushed an upstream patch to tls.c and now it compiles for me again (tested on 10.6/i386 and 10.7). There is a newer upstream release but it adds a lot of new things (like optional gnome/glib use?) so I didn't push it because I'm not maintainer. He might also want to address the lack of swappability (seems like the msmtp and msmtp-ssl variants should be able to displace each other using Conflicts/Replaces tags). dan -- Daniel Macks dma...@netspace.org Depends on openssl100-dev, but that does not provide same API. Fixed upstream bash-3.2# fink install openssl098-dev Information about 11975 packages read in 1 seconds. The following package will be installed or updated: openssl098-dev Reading buildlock packages... /sw/bin/dpkg-lockwait -i /sw/fink/dists/stable/main/binary-darwin-i386/crypto/openssl098-dev_0.9.8x-1_darwin-i386.deb Selecting previously deselected package openssl098-dev. dpkg: considering removing openssl100-dev in favour of openssl098-dev ... dpkg: yes, will remove openssl100-dev in favour of openssl098-dev. (Reading database ... 61940 files and directories currently installed.) Unpacking openssl098-dev (from .../openssl098-dev_0.9.8x-1_darwin-i386.deb) ... Setting up openssl098-dev (0.9.8x-1) ... bash-3.2# fink install msmtp-ssl Information about 11975 packages read in 1 seconds. The following package will be installed or updated: msmtp-ssl The following additional package will be installed: openssl100-dev Do you want to continue? [Y/n] y ... gcc -std=gnu99 -DHAVE_CONFIG_H -DSYSCONFDIR=\/sw/etc\ -DLOCALEDIR=\/sw/share/locale\ -I. -I.. -I../gnulib -I../gnulib -I/sw/include -g -O2 -MT tls.o -MD -MP -MF .deps/tls.Tpo -c -o tls.o tls.c tls.c: In function 'tls_check_cert': tls.c:816: error: 'STACK' undeclared (first use in this function) tls.c:816: error: (Each undeclared identifier is reported only once tls.c:816: error: for each function it appears in.) tls.c:816: error: 'subj_alt_names' undeclared (first use in this function) tls.c: In function 'tls_init': tls.c:1100: warning: assignment discards qualifiers from pointer target type make[2]: *** [tls.o] Error 1 msmtp-ssl depends on openssl100-dev, but openssl100-dev does not provide required API. -- Daniel Macks dma...@netspace.org -- Don't let slow site performance ruin your business. Deploy New Relic APM Deploy New Relic app performance management and know exactly what is happening inside your Ruby, Python, PHP, Java, and .NET app Try New Relic at no cost today and get our sweet Data Nerd shirt too! http://p.sf.net/sfu/newrelic-dev2dev ___ Fink-beginners mailing list Fink-beginners@lists.sourceforge.net List archive: http://news.gmane.org/gmane.os.apple.fink.beginners Subscription management: https://lists.sourceforge.net/lists/listinfo/fink-beginners
Re: [Fink-beginners] build issue with w3m, was Re: Problems updatingfink
On Mon, 05 Nov 2012 11:59:24 -0700, Alexander Hansen alexanderk.han...@gmail.com wrote: On 11/5/12 8:44 AM, Jonathan Grimes wrote: Problems updating fink. I have used and updated fink over the last 2 years with no problems. Last week I tried to update fink but failed. i cant remember having changed anything on my macbook air. could i get some advice on what is going wrong. = Package manager version: 0.34.4 Distribution version: selfupdate-rsync Mon Nov 5 15:33:47 2012, 10.6, x86_64 Trees: local/main stable/main stable/crypto unstable/main unstable/crypto Xcode.app: 3.2.5 Xcode command-line tools: 3.2.5 Max. Fink build jobs: 1 = last lines of the compilation are given below. cd x11 make CC=gcc OPTS= gcc -I../.. -I../.. -I. -g -O2 -I./libwc -I/sw/lib/system-openssl/include -I/sw/lib/system-openssl/include -I/sw/include/gc -I/sw/include -DHAVE_CONFIG_H -I/sw/include -c x11_w3mimg.c gcc -I.. -I.. -I. -g -O2 -I./libwc -I/sw/lib/system-openssl/include -I/sw/lib/system-openssl/include -I/sw/include/gc -I/sw/include -DHAVE_CONFIG_H -I/sw/include -c w3mimg.c ar rv w3mimg.a w3mimg.o x11/x11_w3mimg.o ar: creating archive w3mimg.a a - w3mimg.o a - x11/x11_w3mimg.o ranlib w3mimg.a gcc -I. -I. -g -O2 -I./libwc -I/sw/lib/system-openssl/include -I/sw/lib/system-openssl/include -I/sw/include/gc -I/sw/include -DHAVE_CONFIG_H -DAUXBIN_DIR=\/sw/lib/w3m\ -DCGIBIN_DIR=\/sw/lib/w3m/cgi-bin\ -DHELP_DIR=\/sw/share/w3m\ -DETC_DIR=\/sw/etc\ -DCONF_DIR=\/sw/etc/w3m\ -DRC_DIR=\~/.w3m\ -DLOCALEDIR=\/sw/share/locale\ -o w3mimgdisplay w3mimgdisplay.o w3mimg/w3mimg.a -L/sw/lib/system-openssl/lib -L/sw/lib -L/sw/lib -lImlib2 -L/sw/lib -lfreetype -L/usr/X11/lib -R/usr/X11/lib -lX11 -lXext -ldl -lm gcc -I. -I. -g -O2 -I./libwc -I/sw/lib/system-openssl/include -I/sw/lib/system-openssl/include -I/sw/include/gc -I/sw/include -DHAVE_CONFIG_H -DAUXBIN_DIR=\/sw/lib/w3m\ -DCGIBIN_DIR=\/sw/lib/w3m/cgi-bin\ -DHELP_DIR=\/sw/share/w3m\ -DETC_DIR=\/sw/etc\ -DCONF_DIR=\/sw/etc/w3m\ -DRC_DIR=\~/.w3m\ -DLOCALEDIR=\/sw/share/locale\ -o inflate.o -c ./inflate.c gcc -I. -I. -g -O2 -I./libwc -I/sw/lib/system-openssl/include -I/sw/lib/system-openssl/include -I/sw/include/gc -I/sw/include -DHAVE_CONFIG_H -DAUXBIN_DIR=\/sw/lib/w3m\ -DCGIBIN_DIR=\/sw/lib/w3m/cgi-bin\ -DHELP_DIR=\/sw/share/w3m\ -DETC_DIR=\/sw/etc\ -DCONF_DIR=\/sw/etc/w3m\ -DRC_DIR=\~/.w3m\ -DLOCALEDIR=\/sw/share/locale\ -o inflate inflate.o -L/sw/lib/system-openssl/lib -L/sw/lib -lz for dir in scripts; \ do \ (cd $dir make PERL='/usr/bin/perl' MKDIR='mkdir -p' BIN_DIR='/sw/bin' AUXBIN_DIR='/sw/lib/w3m' CGIBIN_DIR='/sw/lib/w3m/cgi-bin' HELP_DIR='/sw/share/w3m' MAN_DIR='/sw/share/man' ETC_DIR='/sw/etc' CONF_DIR='/sw/etc/w3m' RC_DIR='~/.w3m' DESTDIR='' KEYBIND_SRC='keybind.c'); \ done generating w3mhelp-funcname.pl... done generating w3mhelp-funcdesc*.pl... done for subdir in multipart w3mman; \ do \ (cd $subdir make); \ done make[2]: Nothing to be done for `all'. make[2]: Nothing to be done for `all'. for subdir in multipart w3mman; \ do \ (cd $subdir make); \ done make[2]: Nothing to be done for `all'. make[2]: Nothing to be done for `all'. (cd po make) test ! -f ./w3m.pot || \ test -z ja.gmo || make ja.gmo rm -f ja.gmo /sw/bin/msgfmt -c --statistics --verbose -o ja.gmo ja.po ja.po: 214 translated messages. touch stamp-po fink-package-precedence --depfile-ext='\.d' . Scanning /\.d$/ dependency files... No dependency files found. ### execution of fink-package-precedence failed, exit code 255 ### execution of /tmp/fink.QY769 failed, exit code 255 Removing runtime build-lock... Removing build-lock package... /sw/bin/dpkg-lockwait -r fink-buildlock-w3m-0.5.3-3 (Reading database ... 130411 files and directories currently installed.) Removing fink-buildlock-w3m-0.5.3-3 ... Failed: phase compiling: w3m-0.5.3-3 failed It's easier for people looking up the thread later if the subject specifically references the package which isn't working--you aren't having problems with the fink package manager. What appears to be going wrong is that your compiler isn't generating the dependency files. I'll cc the developer who last modified the package, since the listed maintainer isn't actually active any more. Fixed. I had mis-copied some flags between the different distros. dan -- Daniel Macks dma...@netspace.org -- LogMeIn Central: Instant, anywhere, Remote PC access and management. Stay in control, update software, and manage PCs from one command center Diagnose problems and improve visibility
Re: [Fink-beginners] Webkit-1.0.2-1.2.7-4 build fails on 10.9
On Sun, 1 Dec 2013 06:40:52 -0500, Kevin Horton khorto...@rogers.com wrote:
On November 30, 2013 at 10:00:30 PM, Mark D. McKean
(qpa...@quantumpanda.com) wrote:
(A message about this exact same set of errors was posted to
fink-users by someone else on November 10, but I cannot find any
response having posted.)
Compiling webkit-1.0.2-1.2.7-4 on 10.9 fails with the following error:
===
In file included from WebCore/accessibility/AXObjectCache.cpp:30:
In file included from ./WebCore/accessibility/AXObjectCache.h:29:
In file included from ./WebCore/accessibility/AccessibilityObject.h:34:
In file included from ./WebCore/dom/Range.h:29:
In file included from ./WebCore/dom/RangeBoundaryPoint.h:29:
In file included from ./WebCore/dom/Node.h:28:
In file included from ./WebCore/dom/EventTarget.h:36:
In file included from ./WebCore/dom/EventNames.h:26:
In file included from ./WebCore/platform/ThreadGlobalData.h:31:
In file included from ./JavaScriptCore/wtf/HashMap.h:24:
./JavaScriptCore/wtf/HashTable.h:274:85: error: call to 'swap' is ambiguous
...MoverT, true { static void move(T from, T to) { swap(from, to); } };
^~~~
===
This error appears three times during the build, identically each time.
The remaining info:
===
2 warnings and 3 errors generated.
make[1]: ***
[WebCore/accessibility/libwebkit_1_0_la-AXObjectCache.lo] Error 1
make[1]: Leaving directory
`/sw/src/fink.build/webkit-1.0.2-1.2.7-4/webkit-1.2.7'
make: *** [all] Error 2
make: Leaving directory
`/sw/src/fink.build/webkit-1.0.2-1.2.7-4/webkit-1.2.7'
### execution of /tmp/fink.NC1WU failed, exit code 2
### execution of /tmp/fink.dw5o8 failed, exit code 2
Removing runtime build-lock...
Removing build-lock package...
/sw/bin/dpkg-lockwait -r fink-buildlock-webkit-1.0.2-1.2.7-4
(Reading database ... 51159 files and directories currently installed.)
Removing fink-buildlock-webkit-1.0.2-1.2.7-4 ...
Failed: phase compiling: webkit-1.0.2-1.2.7-4 failed
Package manager version: 0.36.1
Distribution version: selfupdate-rsync Sat Nov 30 18:32:24 2013,
10.9, x86_64
Trees: local/main stable/main
Xcode.app: 5.0.2
Xcode command-line tools: 5.0.1.0.1.1382131676
webkit-1.0.2-1.2.7-4 is set to build with only one job.
===
Mark D. McKean
qpa...@quantumpanda.com
I was the one who reported the previous errors, and I never did
resolve the problem. I get the exact same failures on both my
computers, both running 10.9 with xcode command line tools
5.0.1.0.1.1382131676.
Unfortunately I don't have a 10.9 machine to test. If anyone is able to
solve this, please send me a patch or other info and I'll get it
committed right away.
dan
--
Daniel Macks
dma...@netspace.org
--
Rapidly troubleshoot problems before they affect your business. Most IT
organizations don't have a clear picture of how application performance
affects their revenue. With AppDynamics, you get 100% visibility into your
Java,.NET, PHP application. Start your 15-day FREE TRIAL of AppDynamics Pro!
http://pubads.g.doubleclick.net/gampad/clk?id=84349351iu=/4140/ostg.clktrk
___
Fink-beginners mailing list
Fink-beginners@lists.sourceforge.net
List archive:
http://news.gmane.org/gmane.os.apple.fink.beginners
Subscription management:
https://lists.sourceforge.net/lists/listinfo/fink-beginners
Re: [Fink-beginners] Webkit-1.0.2-1.2.7-4 build fails on 10.9
On Sun, 01 Dec 2013 21:46:21 +0100, Martin Costabel costa...@wanadoo.fr wrote: On 1/12/13 18:42, Daniel Macks wrote: On Sun, 1 Dec 2013 06:40:52 -0500, Kevin Horton khorto...@rogers.com wrote: [] Unfortunately I don't have a 10.9 machine to test. If anyone is able to solve this, please send me a patch or other info and I'll get it committed right away. I have such a patch. For simplicity, I checked it directly into CVS. You can always pull it out again :-) The patch consists of some pieces from the 10.9 patch for qtwebkit that was added for solving the same call to 'swap' is ambiguous problem, plus some additional #include locale.h for files that use setlocale(). I don't know why the latter is not needed on 10.8. Anyway, it should now build on 10.9. Thanks! Should have thought to look at qtwebkit. Not sure about that locale issue either, but as long as it Works, we're all set for now. dan -- Daniel Macks dma...@netspace.org -- Rapidly troubleshoot problems before they affect your business. Most IT organizations don't have a clear picture of how application performance affects their revenue. With AppDynamics, you get 100% visibility into your Java,.NET, PHP application. Start your 15-day FREE TRIAL of AppDynamics Pro! http://pubads.g.doubleclick.net/gampad/clk?id=84349351iu=/4140/ostg.clktrk ___ Fink-beginners mailing list Fink-beginners@lists.sourceforge.net List archive: http://news.gmane.org/gmane.os.apple.fink.beginners Subscription management: https://lists.sourceforge.net/lists/listinfo/fink-beginners
Re: [Fink-beginners] vigra4-1.9.0-5 fails to compile
On Mon, 24 Mar 2014 05:50:47 -0500, Hanspeter Niederstrasser f...@snaggledworks.com wrote: On 3/23/2014 9:08 PM, Daniel Macks wrote: Building on 10.8, with MaxBuildJobs=1, Xcode.app: 5.0.2 Xcode command-line tools: 5.0.1.0.1.1377666378 Sorry about the length here...the problem is one of recursion... [ 54%] Building CXX object vigranumpy/src/core/CMakeFiles/vigranumpy_analysis.dir/accumulator.cxx.o cd /sw/build.build/vigra4-1.9.0-5/vigra-1.9.0/finkbuild/vigranumpy/src/core /sw/var/lib/fink/path-prefix-clang/g++ -MD -DHasHDF5 -Dvigranumpy_analysis_EXPORTS -O3 -DNDEBUG -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.8.sdk -mmacosx-version-min=10.8 -fPIC -I/sw/build.build/vigra4-1.9.0-5/vigra-1.9.0/include -I/sw/include/python2.7 -I/sw/include/boost-1_53 -I/sw/lib/python2.7/site-packages/numpy/core/include -I/sw/include-o CMakeFiles/vigranumpy_analysis.dir/accumulator.cxx.o -c /sw/build.build/vigra4-1.9.0-5/vigra-1.9.0/vigranumpy/src/core/accumulator.cxx In file included from /sw/build.build/vigra4-1.9.0-5/vigra-1.9.0/vigranumpy/src/core/accumulator.cxx:39: In file included from /sw/build.build/vigra4-1.9.0-5/vigra-1.9.0/vigranumpy/src/core/pythonaccumulator.hxx:43: In file included from /sw/build.build/vigra4-1.9.0-5/vigra-1.9.0/include/vigra/numpy_array.hxx:42: In file included from /sw/lib/python2.7/site-packages/numpy/core/include/numpy/arrayobject.h:4: In file included from /sw/lib/python2.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:17: In file included from /sw/lib/python2.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1760: /sw/lib/python2.7/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning: Using deprecated NumPy API, disable it by #defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION [-W#warnings] #warning Using deprecated NumPy API, disable it by \ ^ In file included from /sw/build.build/vigra4-1.9.0-5/vigra-1.9.0/vigranumpy/src/core/accumulator.cxx:39: In file included from /sw/build.build/vigra4-1.9.0-5/vigra-1.9.0/vigranumpy/src/core/pythonaccumulator.hxx:45: /sw/build.build/vigra4-1.9.0-5/vigra-1.9.0/include/vigra/accumulator.hxx:2884:26: fatal error: recursive template instantiation exceeded maximum depth of 128 typedef typename LookupTag::type FindDataIndex; vigra5 had the same failure with Xcode 5. Please try adding SetCXXFLAGS: -ftemplate-depth-1024. If it works, please commit since I can't test Xcode 5. That worked. Committed. Thanks! dan -- Daniel Macks dma...@netspace.org -- Learn Graph Databases - Download FREE O'Reilly Book Graph Databases is the definitive new guide to graph databases and their applications. Written by three acclaimed leaders in the field, this first edition is now available. Download your free book today! http://p.sf.net/sfu/13534_NeoTech ___ Fink-beginners mailing list Fink-beginners@lists.sourceforge.net List archive: http://news.gmane.org/gmane.os.apple.fink.beginners Subscription management: https://lists.sourceforge.net/lists/listinfo/fink-beginners
Re: [Fink-beginners] libmpfr4-shlibs can not install
On Sun, 06 Apr 2014 18:36:40 +0200, Nikita Kalinin nikaan...@gmail.com wrote: nikaan:trunk nikitakalinin$ fink install libmpfr4 Information about 8420 packages read in 0 seconds. The following package will be installed or updated: libmpfr4 The following 7 additional packages will be installed: coreutils help2man-perl5162 liblzma5-shlibs libmpfr4-shlibs locale-gettext-pm5162 texinfo xz Do you want to continue? [Y/n] Y Setting runtime build-lock... dpkg-deb -b /sw/src/fink.build/root-fink-buildlock-locale-gettext-pm5162-1.05-3 /sw/src/fink.build dpkg-deb: building package `fink-buildlock-locale-gettext-pm5162-1.05-3' in `/sw/src/fink.build/fink-buildlock-locale-gettext-pm5162-1.05-3_2014.04.06-18.31.41_darwin-x86_64.deb'. Installing build-lock package... /sw/bin/dpkg-lockwait -i /sw/src/fink.build/fink-buildlock-locale-gettext-pm5162-1.05-3_2014.04.06-18.31.41_darwin-x86_64.deb Selecting previously deselected package fink-buildlock-locale-gettext-pm5162-1.05-3. (Reading database ... 6520 files and directories currently installed.) Unpacking fink-buildlock-locale-gettext-pm5162-1.05-3 (from .../fink-buildlock-locale-gettext-pm5162-1.05-3_2014.04.06-18.31.41_darwin-x86_64.deb) ... Setting up fink-buildlock-locale-gettext-pm5162-1.05-3 (2014.04.06-18.31.41) ... sudo -u fink-bld [ENV] sh -c /tmp/fink.JyFYl env LANG=C LC_ALL=C /sw/bin/tar --no-same-owner --no-same-permissions -xf /sw/src/locale-gettext-pm-1.05.tar.gz sudo -u fink-bld [ENV] sh -c /tmp/fink.7nolW [ -r /sw/fink/dists/stable/main/finkinfo/libs/perlmods/locale-gettext-pm.patch ] sudo -u fink-bld [ENV] sh -c /tmp/fink.vOFfW patch -p1 /sw/fink/dists/stable/main/finkinfo/libs/perlmods/locale-gettext-pm.patch patching file Makefile.PL sudo -u fink-bld [ENV] sh -c /tmp/fink.wbvjZ if [ -e /usr/local/lib/libintl.a -o -e /usr/local/lib/libintl.dylib ]; then echo locale-gettext-pm5162 often builds incorrectly if /usr/local/lib/libintl.*; echo exists. Please move aside /usr/local and try again.; exit 1; fi locale-gettext-pm5162 often builds incorrectly if /usr/local/lib/libintl.* exists. Please move aside /usr/local and try again. ### execution of if failed, exit code 1 ### execution of /tmp/fink.wbvjZ failed, exit code 1 Removing runtime build-lock... Removing build-lock package... /sw/bin/dpkg-lockwait -r fink-buildlock-locale-gettext-pm5162-1.05-3 (Reading database ... 6521 files and directories currently installed.) Removing fink-buildlock-locale-gettext-pm5162-1.05-3 ... Failed: phase compiling: locale-gettext-pm5162-1.05-3 failed Please try exactly what the error itself tells you: locale-gettext-pm5162 often builds incorrectly if /usr/local/lib/libintl.* exists. Please move aside /usr/local and try again. dan -- Daniel Macks dma...@netspace.org -- ___ Fink-beginners mailing list Fink-beginners@lists.sourceforge.net List archive: http://news.gmane.org/gmane.os.apple.fink.beginners Subscription management: https://lists.sourceforge.net/lists/listinfo/fink-beginners
Re: [Fink-beginners] phase compiling: fcgi-pm5124-0.74-1 failed
On Nov 26, 2014, at 6:38 PM, Prabhjeet Basra prabhjeetba...@cmail.carleton.ca wrote: I am using: Package manager version: 0.38.2 Distribution version: selfupdate-rsync Wed Nov 26 20:33:40 2014, 10.9, x86_64 Trees: local/main stable/main Xcode.app: 6.1 And I'm trying to install BioPerl and I keep getting this error snip Generating FCGI.pm cp FCGI.pm blib/arch/FCGI.pm /usr/bin/arch -x86_64 perl5.12.4 -x86_64 perl5.12.4 -Iblib/arch -Iblib/lib FCGI.XL FCGI.xs /usr/bin/arch -x86_64 perl5.12.4 -x86_64 perl5.12.4 -Iblib/arch -Iblib/lib echo.PL echo.fpl /usr/bin/arch -x86_64 perl5.12.4 -x86_64 perl5.12.4 -Iblib/arch -Iblib/lib remote.PL remote.fpl Can't open perl script perl5.12.4: No such file or directory Can't open perl script perl5.12.4: No such file or directory Can't open perl script perl5.12.4: No such file or directory snip Failed: phase compiling: fcgi-pm5124-0.74-1 failed On Fri, 28 Nov 2014 10:15:29 -0800, Alexander Hansen alexanderk.han...@gmail.com wrote: I don’t reproduce this. On my own 10.9/Xcode 6.1 setup I get: Generating FCGI.pm cp FCGI.pm blib/arch/FCGI.pm /usr/bin/arch -x86_64 perl5.12.4 -Iblib/arch -Iblib/lib FCGI.XL FCGI.xs Prabhjeet: was your computer previously running OS X 10.8 and then you updated it to 10.9? dan -- Daniel Macks dma...@netspace.org -- Download BIRT iHub F-Type - The Free Enterprise-Grade BIRT Server from Actuate! Instantly Supercharge Your Business Reports and Dashboards with Interactivity, Sharing, Native Excel Exports, App Integration more Get technology previously reserved for billion-dollar corporations, FREE http://pubads.g.doubleclick.net/gampad/clk?id=157005751iu=/4140/ostg.clktrk ___ Fink-beginners mailing list Fink-beginners@lists.sourceforge.net List archive: http://news.gmane.org/gmane.os.apple.fink.beginners Subscription management: https://lists.sourceforge.net/lists/listinfo/fink-beginners
Re: [Fink-beginners] phase compiling: fcgi-pm5124-0.74-1 failed
On Sat, 29 Nov 2014 12:00:40 -0800, Alexander Hansen alexanderk.han...@gmail.com wrote: On Nov 29, 2014, at 9:23 AM, Alexander Hansen alexanderk.han...@gmail.com wrote: On Nov 28, 2014, at 9:53 PM, Jessilyn Dunn jessilyn.d...@gmail.com wrote: Hi, I am having a similar problem installing Bioperl (I used $ fink install bioperl-pm5162) and received the error: Failed: phase compiling: fcgi-pm5162-0.74-1 failed (before this error, everything seemed to be running smoothly... see below) New package: dists/stable/main/binary-darwin-x86_64/web/libtidyp-dev_1.04-1_darwin-x86_64.deb New package: dists/stable/main/binary-darwin-x86_64/web/libtidyp-shlibs_1.04-1_darwin-x86_64.deb New package: dists/stable/main/binary-darwin-x86_64/web/tidyp_1.04-1_darwin-x86_64.deb New package: dists/stable/main/binary-darwin-x86_64/x11/xdg-base_0.8-2_darwin-x86_64.deb For further details, my system information is: Package manager version: 0.38.2 Distribution version: selfupdate-rsync Fri Nov 28 18:47:48 2014, 10.10, x86_64 Trees: local/main stable/main stable/crypto Xcode.app: 6.1 Xcode command-line tools: 6.1.0.0.1.1413057044 Max. Fink build jobs: 4 Thank you! Jessilyn I get the following (similar setup): Generating FCGI.pm 2 warnings generated. cp FCGI.pm blib/arch/FCGI.pm /usr/bin/arch -x86_64 perl5.16.2 -x86_64 perl5.16.2 -Iblib/arch -Iblib/lib FCGI.XL FCGI.xs /usr/bin/arch -x86_64 perl5.16.2 -x86_64 perl5.16.2 -Iblib/arch -Iblib/lib echo.PL echo.fpl /usr/bin/arch -x86_64 perl5.16.2 -x86_64 perl5.16.2 -Iblib/arch -Iblib/lib remote.PL remote.fpl Can't open perl script perl5.16.2: No such file or directory Can't open perl script perl5.16.2: No such file or directory Can't open perl script perl5.16.2: No such file or directory make: *** [remote.fpl] Error 2 This machine was updated from 10.9 to 10.10. I see essentially the same error when attempting fcgi-pm5182. Let me know if the configure log will help debug this. -- Alexander Hansen, Ph.D. Fink User Liaison We’ve found a workaround, which is to use “fink remove extutils-makemaker-pm5162” and then to build fcgi-pm5162. There's a new version (0.77) of the fcgi-pm* packages propagating through the selfupdate servers that might resolve the build problem. dan -- Daniel Macks dma...@netspace.org -- Download BIRT iHub F-Type - The Free Enterprise-Grade BIRT Server from Actuate! Instantly Supercharge Your Business Reports and Dashboards with Interactivity, Sharing, Native Excel Exports, App Integration more Get technology previously reserved for billion-dollar corporations, FREE http://pubads.g.doubleclick.net/gampad/clk?id=157005751iu=/4140/ostg.clktrk ___ Fink-beginners mailing list Fink-beginners@lists.sourceforge.net List archive: http://news.gmane.org/gmane.os.apple.fink.beginners Subscription management: https://lists.sourceforge.net/lists/listinfo/fink-beginners
