Re: [galaxy-dev] jobid exception
Hi Rémy, Do you have some process that restarts Galaxy if it dies? It should not do this itself. Is there anything being logged right before the server restarts that indicates the problem? --nate On Oct 16, 2013, at 4:10 AM, Rémy Dernat wrote: > Hi, > > About the last updates on DRMAA: now the job is submitted, it seems to work. > However, galaxy is "restarting" constantly... So it became very unusable. > I hope you will fix this. > > Regards. > > > 2013/10/14 Rémy Dernat > Hi, > > After a big upgrade, I have an error when I submit job to SGE through drmaa > > Here is the error I get: > galaxy.jobs.runners.drmaa WARNING 2013-10-14 11:26:08,075 (15615/68154) job > check resulted in InvalidJobException: code 18: The job specified by the > 'jobid' does not exist. > > The job is launch to sge because I see it with "qstat" SGE command. On the > galaxy Web interface, the job is stuck in yellow (running state), although it > is finished. > > When I submit job by using "local" destination it works fine. > > > Here is my job_conf.xml file : > > > > > > load="galaxy.jobs.runners.drmaa:DRMAAJobRunner"/> > load="galaxy.jobs.runners.local:LocalJobRunner" workers="4"/> > > > > > > > > -q all.q -V > > > > > > > Any help would be usefull. > > Regards, > Rem > > > > > > ___ > Please keep all replies on the list by using "reply all" > in your mail client. To manage your subscriptions to this > and other Galaxy lists, please use the interface at: > http://lists.bx.psu.edu/ > > To search Galaxy mailing lists use the unified search at: > http://galaxyproject.org/search/mailinglists/ ___ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/ To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/mailinglists/
Re: [galaxy-dev] jobid exception
Hi, About the last updates on DRMAA: now the job is submitted, it seems to work. However, galaxy is "restarting" constantly... So it became very unusable. I hope you will fix this. Regards. 2013/10/14 Rémy Dernat > Hi, > > After a big upgrade, I have an error when I submit job to SGE through drmaa > > Here is the error I get: > galaxy.jobs.runners.drmaa WARNING 2013-10-14 11:26:08,075 (15615/68154) > job check resulted in InvalidJobException: code 18: The job specified by > the 'jobid' does not exist. > > The job is launch to sge because I see it with "qstat" SGE command. On the > galaxy Web interface, the job is stuck in yellow (running state), although > it is finished. > > When I submit job by using "local" destination it works fine. > > > Here is my job_conf.xml file : > > > > > > load="galaxy.jobs.runners.drmaa:DRMAAJobRunner"/> > load="galaxy.jobs.runners.local:LocalJobRunner" workers="4"/> > > > > > > > > -q all.q -V > > > > > > > Any help would be usefull. > > Regards, > Rem > > > > > ___ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/ To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/mailinglists/
[galaxy-dev] jobid exception
Hi, After a big upgrade, I have an error when I submit job to SGE through drmaa Here is the error I get: galaxy.jobs.runners.drmaa WARNING 2013-10-14 11:26:08,075 (15615/68154) job check resulted in InvalidJobException: code 18: The job specified by the 'jobid' does not exist. The job is launch to sge because I see it with "qstat" SGE command. On the galaxy Web interface, the job is stuck in yellow (running state), although it is finished. When I submit job by using "local" destination it works fine. Here is my job_conf.xml file : -q all.q -V Any help would be usefull. Regards, Rem ___ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/ To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/mailinglists/
