[galaxy-dev] strange issues with tool list
Hi all, currently I face some strange behaviour of the tool panel in Galaxy if I add top-level label tags to the tool_conf.xml. The problem is that the labels stay forever, even if I remove them again from the tool_conf.xml and they also appear three section earlier than where I put them. I tried to remove all tool configs except the one tool_conf.xml. I used just the unchanged tool_conf.xml.main, which added more labels that now stay, and I emptied the tmp directory. Nothing helped. Any help is very much appreciated. Best regards, Sarah ___ Please keep all replies on the list by using reply all in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/
Re: [galaxy-dev] strange issues with tool list
Hello Sarah, This section of the Galaxy tool shed wiki should provide the information you need. Let me know if you bump into any additional questions. http://wiki.g2.bx.psu.edu/Tool%20Shed#Managing_the_layout_of_your_Galaxy_tool_panel Thanks! Greg Von Kuster On May 24, 2012, at 8:15 AM, Sarah Diehl wrote: Hi all, currently I face some strange behaviour of the tool panel in Galaxy if I add top-level label tags to the tool_conf.xml. The problem is that the labels stay forever, even if I remove them again from the tool_conf.xml and they also appear three section earlier than where I put them. I tried to remove all tool configs except the one tool_conf.xml. I used just the unchanged tool_conf.xml.main, which added more labels that now stay, and I emptied the tmp directory. Nothing helped. Any help is very much appreciated. Best regards, Sarah ___ Please keep all replies on the list by using reply all in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/ ___ Please keep all replies on the list by using reply all in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/
Re: [galaxy-dev] strange issues with tool list
Thanks for pointing that out. I missed that there's now a seperate file to organize everything. However, it still seems to have some problems when installing tools from the shed. I just replaced some of my old manual installations of tools with an automatic installation from the shed, but some of the tools don't show up in the list or disappear after I install the next one. After deleting the integrated_tool_panel.xml again and restarting it seems to be fine for now. On 05/24/2012 02:57 PM, Greg Von Kuster wrote: Hello Sarah, This section of the Galaxy tool shed wiki should provide the information you need. Let me know if you bump into any additional questions. http://wiki.g2.bx.psu.edu/Tool%20Shed#Managing_the_layout_of_your_Galaxy_tool_panel Thanks! Greg Von Kuster On May 24, 2012, at 8:15 AM, Sarah Diehl wrote: Hi all, currently I face some strange behaviour of the tool panel in Galaxy if I add top-level label tags to the tool_conf.xml. The problem is that the labels stay forever, even if I remove them again from the tool_conf.xml and they also appear three section earlier than where I put them. I tried to remove all tool configs except the one tool_conf.xml. I used just the unchanged tool_conf.xml.main, which added more labels that now stay, and I emptied the tmp directory. Nothing helped. Any help is very much appreciated. Best regards, Sarah ___ Please keep all replies on the list by using reply all in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/ ___ Please keep all replies on the list by using reply all in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/
