Re: [galaxy-dev] Trimmomatic tool is not visible in the workflow editor

2016-09-13 Thread Amarathunga A. Dineli Karunath
I have installed Galaxy using this link : 
https://bitbucket.org/apetkau/galaxy-dist/get/b065a7a.tar.gz I’m using Galaxy 
along with an open source project so this instance is built specifically for 
that project I guess. In that case do you know how I should update it?

Thanks,
Dineli



From: Martin Čech [mailto:mar...@bx.psu.edu]
Sent: Wednesday, September 14, 2016 10:15 AM
To: Amarathunga A. Dineli Karunath; galaxy-...@bx.psu.edu
Subject: Re: [galaxy-dev] Trimmomatic tool is not visible in the workflow editor

I think you might need to update since I believe the trimmomatic tool uses 
features that are not available in the 15.03 Galaxy workflow editor/engine.

M.

On Tue, Sep 13, 2016, 21:45 Amarathunga A. Dineli Karunath 
> 
wrote:
Hi Martin,

It’s 15.03.

Regards,
Dineli

From: Martin Čech [mailto:mar...@bx.psu.edu]
Sent: Tuesday, September 13, 2016 10:31 PM
To: Amarathunga A. Dineli Karunath; 
galaxy-...@bx.psu.edu
Subject: Re: [galaxy-dev] Trimmomatic tool is not visible in the workflow editor

Hi Dineli,

what version of Galaxy do you have installed?

thanks

Martin

On Tue, Sep 13, 2016 at 10:27 AM Amarathunga A. Dineli Karunath 
> 
wrote:

Hi,

I have a local galaxy instance and have installed many tools from the galaxy 
tool shed. Recently I have installed Trimmomatic tool and installation was 
successful but when I go to build a workflow, trimmomatic tool is not visible 
in the tool panel. It works fine in all other places. Could you please help me 
on this? Please refer the attachments I have provided.

Thanks & Regards,

Dineli




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Re: [galaxy-dev] Trimmomatic tool is not visible in the workflow editor

2016-09-13 Thread Amarathunga A. Dineli Karunath
Hi Martin,

It’s 15.03.

Regards,
Dineli

From: Martin Čech [mailto:mar...@bx.psu.edu]
Sent: Tuesday, September 13, 2016 10:31 PM
To: Amarathunga A. Dineli Karunath; galaxy-...@bx.psu.edu
Subject: Re: [galaxy-dev] Trimmomatic tool is not visible in the workflow editor

Hi Dineli,

what version of Galaxy do you have installed?

thanks

Martin

On Tue, Sep 13, 2016 at 10:27 AM Amarathunga A. Dineli Karunath 
> 
wrote:

Hi,

I have a local galaxy instance and have installed many tools from the galaxy 
tool shed. Recently I have installed Trimmomatic tool and installation was 
successful but when I go to build a workflow, trimmomatic tool is not visible 
in the tool panel. It works fine in all other places. Could you please help me 
on this? Please refer the attachments I have provided.

Thanks & Regards,

Dineli




Important: This email is confidential and may be privileged. If you are not the 
intended recipient, please delete it and notify us immediately; you should not 
copy or use it for any purpose, nor disclose its contents to any other person. 
Thank you.
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Re: [galaxy-dev] Trimmomatic tool is not visible in the workflow editor

2016-09-13 Thread Martin Čech
I think you might need to update since I believe the trimmomatic tool uses
features that are not available in the 15.03 Galaxy workflow editor/engine.

M.

On Tue, Sep 13, 2016, 21:45 Amarathunga A. Dineli Karunath <
dineli_karunathil...@nuhs.edu.sg> wrote:

> Hi Martin,
>
>
>
> It’s 15.03.
>
>
>
> Regards,
>
> Dineli
>
>
>
> *From:* Martin Čech [mailto:mar...@bx.psu.edu]
> *Sent:* Tuesday, September 13, 2016 10:31 PM
> *To:* Amarathunga A. Dineli Karunath; galaxy-...@bx.psu.edu
> *Subject:* Re: [galaxy-dev] Trimmomatic tool is not visible in the
> workflow editor
>
>
>
> Hi Dineli,
>
>
>
> what version of Galaxy do you have installed?
>
>
>
> thanks
>
>
>
> Martin
>
>
>
> On Tue, Sep 13, 2016 at 10:27 AM Amarathunga A. Dineli Karunath <
> dineli_karunathil...@nuhs.edu.sg> wrote:
>
> Hi,
>
> I have a local galaxy instance and have installed many tools from the
> galaxy tool shed. Recently I have installed Trimmomatic tool and
> installation was successful but when I go to build a workflow, trimmomatic
> tool is not visible in the tool panel. It works fine in all other places.
> Could you please help me on this? Please refer the attachments I have
> provided.
>
> Thanks & Regards,
>
> Dineli
>
>
>
>
> --
>
>
> Important: This email is confidential and may be privileged. If you are
> not the intended recipient, please delete it and notify us immediately; you
> should not copy or use it for any purpose, nor disclose its contents to any
> other person. Thank you.
>
> ___
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>
>
> --
>
> Important: This email is confidential and may be privileged. If you are
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Re: [galaxy-dev] Send repeat parameter to code file for multiple select list

2016-09-13 Thread Katherine Beaulieu
If anyone was wondering, I ended up sending the name of the repeat to the
function in the code file which is a list of dictionaries and in the
dictionaries you have an index and the other parameters in the repeat so as
long as you know the name of the parameters you are golden.

On Fri, Sep 2, 2016 at 9:07 PM, Katherine Beaulieu <
katherine.beaulieu...@gmail.com> wrote:

>
>
> On Fri, Sep 2, 2016 at 9:07 PM, Katherine Beaulieu <
> katherine.beaulieu...@gmail.com> wrote:
>
>> Hi Bjorn,
>> Thank you for taking the time to reply to my question. I don't think this
>> quite fits what I am trying to accomplish. I am trying to pass a set of
>> metadata key value pairs, where the user can have as many key value pairs
>> as they want, generated with a repeat parameter. I would need to pass the
>> entire contents of the repeat parameter to the code file to generate a
>> dynamic select list. Do you think this is possible? Perhaps I misread the
>> file you have sent me a link to.
>> Thanks,
>> Katherine
>>
>> On Fri, Sep 2, 2016 at 6:12 PM, Björn Grüning 
>> wrote:
>>
>>> Hi Katherine,
>>>
>>> have a look at this one using repeats:
>>>
>>> https://github.com/bgruening/galaxytools/blob/master/tools/d
>>> eseq2/deseq_helper.py
>>>
>>> Ciao,
>>> Bjoern
>>>
>>>
>>> Am 01.09.2016 um 13:58 schrieb Katherine Beaulieu:
>>> > Hello Galaxy Community,
>>> > I was wondering if anyone had ever come across a situation where they
>>> > have had to pass the contents of a repeat parameter to a code file in a
>>> > Galaxy tool config? Is there any way to do this?
>>> > Katherine
>>> >
>>> >
>>> > ___
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>>> > and other Galaxy lists, please use the interface at:
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>>> >   http://galaxyproject.org/search/mailinglists/
>>> >
>>>
>>
>>
>
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[galaxy-dev] Odd error, solution not understood

2016-09-13 Thread Scott Szakonyi
Hi all,

I'm getting the following error when attempting to do a trackster
visualization:

Error: The requested genome file
(/vectorbase/web/Galaxy/galaxy/tool-data/shared/ucsc/chrom/?.len)
could not be opened. Exiting!
Couldn't open /vectorbase/web/Galaxy/galaxy/tool-data/shared/ucsc/chrom/?.len

I found a discussion related to this error online at
https://biostar.usegalaxy.org/p/6938/, but I'm unsure what the offered
solution actually means in terms of what I need to do. It says "
You'll need to set your dataset's database/dbkey to your custom reference
genome before you can visualize it". Can someone point me in the right
direction to solve this issue?

Thanks in advance,

Scott

-- 
Scott B. Szakonyi
Research Programmer

*Center for Research Computing*
107 Information Technology Center
Notre Dame, IN 46556
http://crc.nd.edu
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Re: [galaxy-dev] Can't log in to Galaxy instance using Safari web browser

2016-09-13 Thread Martin Čech
Stephanie:

can you log in to usegalaxy.org or test.galaxyproject.org using Safari?
Also please try to login to your instance using Safari private window.

Martin

On Tue, Sep 13, 2016 at 11:33 AM Stephanie LE GRAS  wrote:

> Hi Martin,
>
>
>
> Thank you for your feedback. We don’t have any javascript errors…
>
>
>
> Stephanie
>
>
>
> *De : *Martin Čech 
> *Date : *mardi 13 septembre 2016 16:36
> *À : *Stephanie Le Gras , "
> galaxy-dev@lists.galaxyproject.org" 
> *Objet : *Re: [galaxy-dev] Can't log in to Galaxy instance using Safari
> web browser
>
>
>
> Hello Stephanie,
>
> I have just tested this on 16.07 and on `dev` branch of Galaxy and it
> works for both in my case. Can you please check the browser's console for
> javascript errors?
>
>
>
> Thanks,
>
>
>
> Martin
>
> On Tue, Sep 13, 2016 at 10:22 AM Stephanie LE GRAS 
> wrote:
>
> Hi there (again),
>
>
>
> Another problem we are currently facing is that we cannot log in anymore
> on our galaxy instance using Safari. It’s working with Firefox and Chrome
> but when we are using Safari (with the right password and login) we just
> see a green box saying that we successfully logged in and we go back to the
> log in page.
>
>
>
> This is a problem we are encountering on our test instance that we’ve just
> updated to the latest release release_16.07.
>
>
>
> Any idea about what the problem can be ?
>
>
>
> Many thanks in advance for any help,
>
>
>
> Best regards,
>
>
>
> Stephanie
>
> --
>
> Stephanie Le Gras
>
> INSERM
> Computational scientist - Bioinformatician
> GenomEast platform (former Microarray and Sequencing platform)
> IGBMC
> 1, rue Laurent Fries
> 67404 ILLKIRCH Cedex
> France
> Tel. : +33 (0)3 88 65 32 73
>
>
>
> ___
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>
>
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Re: [galaxy-dev] Can't log in to Galaxy instance using Safari web browser

2016-09-13 Thread Martin Čech
Hello Stephanie,

I have just tested this on 16.07 and on `dev` branch of Galaxy and it works
for both in my case. Can you please check the browser's console for
javascript errors?

Thanks,

Martin

On Tue, Sep 13, 2016 at 10:22 AM Stephanie LE GRAS  wrote:

> Hi there (again),
>
>
>
> Another problem we are currently facing is that we cannot log in anymore
> on our galaxy instance using Safari. It’s working with Firefox and Chrome
> but when we are using Safari (with the right password and login) we just
> see a green box saying that we successfully logged in and we go back to the
> log in page.
>
>
>
> This is a problem we are encountering on our test instance that we’ve just
> updated to the latest release release_16.07.
>
>
>
> Any idea about what the problem can be ?
>
>
>
> Many thanks in advance for any help,
>
>
>
> Best regards,
>
>
>
> Stephanie
>
> --
>
> Stephanie Le Gras
>
> INSERM
> Computational scientist - Bioinformatician
> GenomEast platform (former Microarray and Sequencing platform)
> IGBMC
> 1, rue Laurent Fries
> 67404 ILLKIRCH Cedex
> France
> Tel. : +33 (0)3 88 65 32 73
>
>
> ___
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> and other Galaxy lists, please use the interface at:
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>
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Re: [galaxy-dev] Can't log in to Galaxy instance using Safari web browser

2016-09-13 Thread Stephanie LE GRAS
Hi Martin,

Thank you for your feedback. We don’t have any javascript errors…

Stephanie

De : Martin Čech 
Date : mardi 13 septembre 2016 16:36
À : Stephanie Le Gras , "galaxy-dev@lists.galaxyproject.org" 

Objet : Re: [galaxy-dev] Can't log in to Galaxy instance using Safari web 
browser

Hello Stephanie,

I have just tested this on 16.07 and on `dev` branch of Galaxy and it works for 
both in my case. Can you please check the browser's console for javascript 
errors?

Thanks,

Martin
On Tue, Sep 13, 2016 at 10:22 AM Stephanie LE GRAS 
> wrote:
Hi there (again),

Another problem we are currently facing is that we cannot log in anymore on our 
galaxy instance using Safari. It’s working with Firefox and Chrome but when we 
are using Safari (with the right password and login) we just see a green box 
saying that we successfully logged in and we go back to the log in page.

This is a problem we are encountering on our test instance that we’ve just 
updated to the latest release release_16.07.

Any idea about what the problem can be ?

Many thanks in advance for any help,

Best regards,

Stephanie
--
Stephanie Le Gras
INSERM
Computational scientist - Bioinformatician
GenomEast platform (former Microarray and Sequencing platform)
IGBMC
1, rue Laurent Fries
67404 ILLKIRCH Cedex
France
Tel. : +33 (0)3 88 65 32 73

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Re: [galaxy-dev] apache on ubuntu

2016-09-13 Thread Jochen Bick
Hi Keith,


> You say you can see the Apache instance from other machines on the network. I 
> assume you are accessing your machine via its local IP address (something 
> like 192.168.1.x); what happens when you try to access Galaxy via 
> http://192.168.1.x:8080?
> 
Yes I used my local IP and checked it from another PC inside the local
network. I just saw the apache running. Changing the to the correct port
did not give me access to my running galaxy.


> I see you are editing the config file in /etc/apache2/sites-available; have 
> you enabled this site?  That is, do you also see the config file in 
> /etc/apache2/sites-enabled?
> 

I have to check again but I think I also saw the sides-enabled.

Cheers Jochen
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[galaxy-dev] bowtie2 data_manager issue

2016-09-13 Thread Joseph Sarro
I am indexing reference genomes for bowtie2/tophat2, using the
corresponding data manager. I am getting some successful indexes and others
are giving an error. For the successful ones I see the genomes are
appearing in the "built in index" drop down for both bowtie2 and tophat2.
For the unsuccessful ones I am seeing them in the bowtie2 drop down but not
tophat2. Any ideas on what could be causing this issue?

The error message is as follows

Thanks in advance.

Traceback (most recent call last):
  File "/vectorbase/web/Galaxy/galaxy-dist/lib/galaxy/jobs/runners/local.py",
line 128, in queue_job
job_wrapper.finish( stdout, stderr, exit_code )
  File "/vectorbase/web/Galaxy/galaxy-dist/lib/galaxy/jobs/__init__.py",
line 1375, in finish
self.tool.exec_after_process( self.queue.app, inp_data, out_data,
param_dict, job=job )
  File "/vectorbase/web/Galaxy/galaxy-dist/lib/galaxy/tools/__init__.py",
line 2107, in exec_after_process
data_manager.process_result( out_data )
  File 
"/vectorbase/web/Galaxy/galaxy-dist/lib/galaxy/tools/data_manager/manager.py",
line 303, in process_result
self.process_move( data_table_name, name, output_ref_values[ name
].extra_files_path, **data_table_value )
  File "/vectorbase/web/Galaxy/galaxy-dist/lib/galaxy/model/__init__.py",
line 1891, in extra_files_path
return self.dataset.extra_files_path
  File "/vectorbase/web/Galaxy/galaxy-dist/lib/galaxy/model/__init__.py",
line 1707, in get_extra_files_path
return self.object_store.get_filename( self, dir_only=True,
extra_dir=self._extra_files_path or "dataset_%d_files" % self.id )
  File "/vectorbase/web/Galaxy/galaxy-dist/lib/galaxy/objectstore/__init__.py",
line 487, in get_filename
return self._call_method('get_filename', obj, ObjectNotFound,
True, **kwargs)
  File "/vectorbase/web/Galaxy/galaxy-dist/lib/galaxy/objectstore/__init__.py",
line 508, in _call_method
% ( method, str( obj ), str( kwargs ) ) )
ObjectNotFound: objectstore, _call_method failed: get_filename on
, kwargs: {'dir_only':
True, 'extra_dir': 'dataset_19568_files'}
Tool execution generated the following error message:
Unable to finish job
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Re: [galaxy-dev] apache on ubuntu

2016-09-13 Thread Suderman Keith
Jochen,

Two quick questions for you:

You say you can see the Apache instance from other machines on the network. I 
assume you are accessing your machine via its local IP address (something like 
192.168.1.x); what happens when you try to access Galaxy via 
http://192.168.1.x:8080?

I see you are editing the config file in /etc/apache2/sites-available; have you 
enabled this site?  That is, do you also see the config file in 
/etc/apache2/sites-enabled?

Keith

> On Sep 2, 2016, at 5:32 AM, Jochen Bick  wrote:
> 
> Hi Ray,
> 
> yes exactly. So my problem is that I have no idea where to copy those 
> settings. I have tutorial how it works on Centos but the file structure is 
> different on Ubuntu.
> 
> So I have my galaxy instance running on localhost:8080 (can also be moved to 
> something else). If I run localhost or my local ip in a browser I see the 
> apache also from a different PC in my network. So my idea is to redirect the 
> apache or galaxy to my IP so that everyone in the network can see and use it 
> (ssl encrypted if possible)
> 
> Cheers Jochen
> 
> On 02.09.2016 06:02, Raymond Wan wrote:
>> Hi Jochen,
>> 
>> I presume you looked at this already:
>> 
>> https://wiki.galaxyproject.org/Admin/Config/ApacheProxy
>> 
>> Those instructions work for Ubuntu as well.  What do your Apache2
>> error logs says (in /var/log/apache2/)?  And what have you tried in
>> your configuration files?
>> 
>> And are you trying to forward port 80 to 8080, 443 to 8080 or something else?
>> 
>> Ray
>> 
>> 
>> 
>> On Fri, Sep 2, 2016 at 5:53 AM, Jochen Bick  wrote:
>>> Hi,
>>> 
>>> I'm having trouble setting up the apache to redirect my local running galaxy
>>> which runs on localhost:8080
>>> I would like that people could have access inside the lab knowing my local
>>> ip address. I read plenty of tutorials, can anyone help setting it up on
>>> Ubuntu? The files I have to modify are located at:
>>> /etc/apache2/sites-available/
>>> 000-default.conf and default-ssl.config ?
>>> 
>>> apache is up and running.
>>> 
>>> Cheers Jochen
>>> ___
>>> Please keep all replies on the list by using "reply all"
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--
Research Associate
Department of Computer Science
Vassar College
Poughkeepsie, NY



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Re: [galaxy-dev] Trimmomatic tool is not visible in the workflow editor

2016-09-13 Thread Martin Čech
Hi Dineli,

what version of Galaxy do you have installed?

thanks

Martin

On Tue, Sep 13, 2016 at 10:27 AM Amarathunga A. Dineli Karunath <
dineli_karunathil...@nuhs.edu.sg> wrote:

> Hi,
>
> I have a local galaxy instance and have installed many tools from the
> galaxy tool shed. Recently I have installed Trimmomatic tool and
> installation was successful but when I go to build a workflow, trimmomatic
> tool is not visible in the tool panel. It works fine in all other places.
> Could you please help me on this? Please refer the attachments I have
> provided.
>
> Thanks & Regards,
>
> Dineli
>
>
>
> --
>
> Important: This email is confidential and may be privileged. If you are
> not the intended recipient, please delete it and notify us immediately; you
> should not copy or use it for any purpose, nor disclose its contents to any
> other person. Thank you.
> ___
> Please keep all replies on the list by using "reply all"
> in your mail client.  To manage your subscriptions to this
> and other Galaxy lists, please use the interface at:
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[galaxy-dev] Can't display tools in the middle panel of Galaxy

2016-09-13 Thread Stephanie LE GRAS
Hi there (again again),

The last problem we are facing is that sometime when clicking on a tool name in 
the tool panel, the form don’t get displayed in the middle panel. We’ve checked 
the log of galaxy and it seems that the HTML request arrives but nothing 
happens.
We have noticed that this seems to occur more ofter when the history is empty 
and we can correct the phenomenon if we use a non empty url such as : 
http://use.galaxeast.fr/root?job_id=c72a8935c65f68c1 or if we load an history 
and click on the [i] (view details) of a dataset.

Versions of Galaxy : release_16.04 (production instance), release_16.07 (test 
instance).

Any idea about what the problem can be ?

Many thanks in advance for any help,

Best regards,

Stephanie
--
Stephanie Le Gras
INSERM
Computational scientist - Bioinformatician
GenomEast platform (former Microarray and Sequencing platform)
IGBMC
1, rue Laurent Fries
67404 ILLKIRCH Cedex
France
Tel. : +33 (0)3 88 65 32 73

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[galaxy-dev] Can't log in to Galaxy instance using Safari web browser

2016-09-13 Thread Stephanie LE GRAS
Hi there (again),

Another problem we are currently facing is that we cannot log in anymore on our 
galaxy instance using Safari. It’s working with Firefox and Chrome but when we 
are using Safari (with the right password and login) we just see a green box 
saying that we successfully logged in and we go back to the log in page.

This is a problem we are encountering on our test instance that we’ve just 
updated to the latest release release_16.07.

Any idea about what the problem can be ?

Many thanks in advance for any help,

Best regards,

Stephanie
--
Stephanie Le Gras
INSERM
Computational scientist - Bioinformatician
GenomEast platform (former Microarray and Sequencing platform)
IGBMC
1, rue Laurent Fries
67404 ILLKIRCH Cedex
France
Tel. : +33 (0)3 88 65 32 73

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[galaxy-dev] Problem downloading HTML datasets

2016-09-13 Thread Stephanie LE GRAS
Hi there,

I’m currently facing several problems with the galaxy instance I’m managing. 
I’m going to send a mail per problem so sorry in advance : for flooding !

The first problem I’m facing is that we can’t download HTML datasets from 
Galaxy. Here is the error I got when I try to do download an HTML dataset :

URL: http://use.galaxeast.fr/datasets/ff16fe18e3db62e7/display?to_ext=html
File 
'/data2/galaxy/production/galaxy/.venv/lib/python2.7/site-packages/weberror/evalexception.py',
 line 431 in respond
  app_iter = self.application(environ, detect_start_response)
File 
'/data2/galaxy/production/galaxy/.venv/lib/python2.7/site-packages/paste/recursive.py',
 line 85 in __call__
  return self.application(environ, start_response)
File 
'/data2/galaxy/production/galaxy/.venv/lib/python2.7/site-packages/paste/httpexceptions.py',
 line 640 in __call__
  return self.application(environ, start_response)
File '/data2/galaxy/production/galaxy/lib/galaxy/web/framework/base.py', line 
131 in __call__
  return self.handle_request( environ, start_response )
File '/data2/galaxy/production/galaxy/lib/galaxy/web/framework/base.py', line 
190 in handle_request
  body = method( trans, **kwargs )
File 
'/data2/galaxy/production/galaxy/lib/galaxy/webapps/galaxy/controllers/dataset.py',
 line 245 in display
  return data.datatype.display_data(trans, data, preview, filename, to_ext, 
offset=offset, ck_size=ck_size, **kwd)
File '/data2/galaxy/production/galaxy/lib/galaxy/datatypes/data.py', line 353 
in display_data
  return self._archive_composite_dataset( trans, data, **kwd )
File '/data2/galaxy/production/galaxy/lib/galaxy/datatypes/data.py', line 235 
in _archive_composite_dataset
  params = util.Params( kwd )
File '/data2/galaxy/production/galaxy/lib/galaxy/util/__init__.py', line 683 in 
__init__
  self.__dict__[ key ] = sanitize_param( value )
File '/data2/galaxy/production/galaxy/lib/galaxy/util/__init__.py', line 488 in 
sanitize_param
  raise Exception('Unknown parameter type (%s)' % ( type( value ) ))
Exception: Unknown parameter type ()

We don’t want to disable the sanitize process and we try to add some tools that 
generate HTML datasets into the whitelist but it didn’t solve our problem.

Version of Galaxy : release_16.04

Any idea about what the problem can be ?

Many thanks in advance for any help,

Best regards,

Stephanie

--
Stephanie Le Gras
INSERM
Computational scientist - Bioinformatician
GenomEast platform (former Microarray and Sequencing platform)
IGBMC
1, rue Laurent Fries
67404 ILLKIRCH Cedex
France
Tel. : +33 (0)3 88 65 32 73

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Re: [galaxy-dev] apache on ubuntu

2016-09-13 Thread Will Holtz
a2enmod adds an apache module to your list of enabled modules. Previously
enabled modules will remain enabled.

-Will

On Tue, Sep 13, 2016 at 12:10 AM, Jochen Bick 
wrote:

> Hi Will and Ray,
>
>
> > You may need to load the mod_rewrite module. This can be done via:
> > sudo a2enmod rewrite
>
> I will try that. Is this also resetting the modules of apache?
>
> >
> > -Will
> >
>
>
> >>
> >> I presume you've restarted the web server after making this change?
> >>
> >> Apache's mod_rewrite (the module you are using to achieve the above)
> >> has a logging facility, which you might want to read about:
> >>
>
> Yes I did a restart. Maybe I put the code to the wrong position?
>
> I think I will also ask somewhere else for help.
>
> Cheers Jochen
>



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Re: [galaxy-dev] apache on ubuntu

2016-09-13 Thread Jochen Bick
Hi Will and Ray,


> You may need to load the mod_rewrite module. This can be done via:
> sudo a2enmod rewrite

I will try that. Is this also resetting the modules of apache?

> 
> -Will
> 


>>
>> I presume you've restarted the web server after making this change?
>>
>> Apache's mod_rewrite (the module you are using to achieve the above)
>> has a logging facility, which you might want to read about:
>>

Yes I did a restart. Maybe I put the code to the wrong position?

I think I will also ask somewhere else for help.

Cheers Jochen
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