Decision Support was: MIE-2008

2008-06-14 Thread Thilo Schuler
Hi Hugh and Gerard,

I very much agree that snomed coding should only be done where it adds
value. Since archetypes provide meaning themselves not everything has
to be coded (as opposed to HL7 that relies more on external codes).
Although for export to non-openEHR formats (or data-mining on openEHR
*and* non-EHR data) it could still be useful. But since finding
suitable codes can be very tough, such gimmick coding will probably
rarely happen in the first instance.

Using codes to reduce the number of archetypes is a very valuable use
case. Having a generic archetype as a recording pattern (e.g. lab
archetype) and using codes to specify the actual analyte makes sense.
As mentioned before templates should be used to aggregate these
archetypes in a specific testing 'battery'.

Looking at the openEHR archetype repository, there is a generic lab
archetype and several specialiced ones based on it. However, it seems
to me that the specialisations were done mainly to create battery
type lab results structures (e.g. laboratory-liver_function) I think
keeping the lab archetype to one analyte and aggregating them in a
template would be cleaner and better from a query perspective.
Specialisations of the generic lab archetype should only be used to
add a field that is missing for an unkonventinal lab test.

What do you think?

Again, I would like to point you to the terminology use case section
in the openEHR wiki:
http://www.openehr.org/wiki/display/healthmod/Archetypes+and+Terminology#ArchetypesandTerminology-Usecasesforterminologyreferencesinarchetypes

Lets fill this use case list in a *collaborative* manner. It is better
to have our thoughts in a permanent spot (wiki) than only in a mailing
list thread where they get burried and forgotten after a while.  No
hesitation, add/rearrange etc as you please ... everything is
versioned so nothing gets lost!

Hugh, could you add the fewer archetypes use case please.

Cheers, Thilo




On Fri, Jun 13, 2008 at 10:53 AM, Gerard Freriks gfrer at luna.nl wrote:
 Hi,
 The way I like to think about it is that there is a generic archetype for
 lab-tests as a recurring 'pattern'.
 Each individual lab test procedure is a code from a general coding system.
 The way Lab-test are reported (quantitative data, in what units of
 measurement, precision, normal value ranges, semi quantitative data, in what
 ordinal scale ,etc, etc) will be 'codes' as well, but this time from the
 Laboratory Resource Description System.
 The 'patterns' will probably be a special type of Archetype that is of the
 cluster nature.
 Batteries have  Template nature.
 Gerard


 On 13, Jun, 2008, at 6:11 , Hugh Leslie wrote:

 Hi Daniel

 I was just using that as an example where its not always useful to code
 everything.  I certainly wasn't trying to say that its not useful to
 code anything and the example that you give is where it is useful to code.
 I was just pushing back against those that want to code everything as I
 believe that we need to code those things that make sense.

 In terms of battery archetypes, thats another problem because batterys tend
 to vary between labs (certainly here in Australia anyway.)  I would expect
 that it might be templates that solve this problem with the archetype
 providing something more generic.  Coding of the analytes would then make
 sense so that you can compare different result sets.  This could be also
 solved by producing archetypes for each analyte and then reusing them for
 different batteries.  This would then mean that P-ALAT is the same archetype
 where ever it is used.  Personally, I think the coded solution is better
 here as we would have fewer archetypes to manage.

 regards Hugh


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 Huigsloterdijk 378
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 The Netherlands
 T: +31 252544896
 M: +31 620347088
 E: gfrer at luna.nl

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 Safety, deserve neither Liberty nor Safety. Benjamin Franklin 11 Nov 1755





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Decision Support was: MIE-2008

2008-06-14 Thread Gerard Freriks
Dear all,

It is all about patterns for documenting.

I agree that inspection of the present collection of openEHR  
archetypes and those produce by the NHS are a nice resource.
But we must realize that these were produced for demonstration,  
testing, learning or the collection of information requirements.
The Templates and Archetypes we need must be designed for semantic  
correct, reusable, patient safe recording, retrieval, exchange and  
archiving in mind.
A complete new set of scopes that need explicit requirements.

- Patterns are to be re-used and aggregated in other archetypes or  
templates.
Question: What are the rules to be applied to make that decision?

- A pattern will need a new specialization only when new things have  
to be added to the original pattern.
Question: What are the rules for to decide when  to specialize or when  
to add a new item to the original archetype and create a new version?

- What patterns do we have to have in order to be able to document  
what we need to document?
Will we find the answer when we look at the language aspects of what  
we document?

- Some Archetypes document complex notions.
For example: the Barletts Index.
It is  a collection of Observations about a patient system.
Each of these observations can be recorded using a documentation  
pattern.
The aggregation of observations is expressed as a number using an  
algorithm.
This aggregation is named the Bartletts Index.

All of the observations can be documented using separate archetypes  
using semi-quantitate patterns.
The algorithm can be documented in whatever format.
The result is documented using a semi-quantitative pattern,
either on its own as the professional opinion of the healthcare  
provider,
or as the result of the application of the algorithm, as substitute of  
the healthcare providers subjective estimation.

So the Bartletts Index can be a subjective statement of the class of  
Evaluation Archetypes based on Observations,
or the a subjective statement (Evaluation) by a healthcare provider  
without any reference to feeding observations,

What will we do when new observation elements are added to the  
Bartletts Index?
What will we do when a new algorithm is used to do the calculations?

Is this line of reasoning not leading to the following statements:
Observations are observations and end  up in Observation Archetypes  
and are recorded in the EHR, as such.
The Bartlett Index is a derivative that either is an Evaluation of  
Risk expressed as the ARchetype Index as perceived by the documenting  
healthcare provider,
or, the Bartletts Index is a formalism (algorithm) applied to a set of  
documented Observations leading to a risk index that has to be  
documented as an Evaluation.

I might even argue that the Bartletts Index is an agreed Common  
Template to express risk for the new born, that could change over time  
as it is the result of present opinions that can change.
This means that there are two versions of the Bartlett Index that  
express the same notion.
One is the professional opinion of the risk for the newborn by the  
healthcare provider is a certain number.
And that the risk is calculated by a specified algorithm using a  
defined set of observations.

Question: Is the Bartlett Index an Observation or an Evaluation?
Question: Are there two kinds of Indexes?
Question: Is the Bartlett Index an Archetype or Template?

Or more general:
Are Archetype about recording patterns?
Are Templates about context (location, time and culture) dependent  
collection of constituting archetypes?

Gerard













On 14, Jun, 2008, at 15:55 , Thilo Schuler wrote:

 Looking at the openEHR archetype repository, there is a generic lab
 archetype and several specialiced ones based on it. However, it seems
 to me that the specialisations were done mainly to create battery
 type lab results structures (e.g. laboratory-liver_function) I think
 keeping the lab archetype to one analyte and aggregating them in a
 template would be cleaner and better from a query perspective.
 Specialisations of the generic lab archetype should only be used to
 add a field that is missing for an unkonventinal lab test.

 What do you think?




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T: +31 252544896
M: +31 620347088
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Decision Support was: MIE-2008

2008-06-13 Thread Gerard Freriks
Hi,

The way I like to think about it is that there is a generic archetype  
for lab-tests as a recurring 'pattern'.
Each individual lab test procedure is a code from a general coding  
system.
The way Lab-test are reported (quantitative data, in what units of  
measurement, precision, normal value ranges, semi quantitative data,  
in what ordinal scale ,etc, etc) will be 'codes' as well, but this  
time from the Laboratory Resource Description System.

The 'patterns' will probably be a special type of Archetype that is of  
the cluster nature.
Batteries have  Template nature.

Gerard



On 13, Jun, 2008, at 6:11 , Hugh Leslie wrote:

 Hi Daniel

 I was just using that as an example where its not always useful to  
 code everything.  I certainly wasn't trying to say that its not  
 useful to code anything and the example that you give is where it is  
 useful to code.  I was just pushing back against those that want to  
 code everything as I believe that we need to code those things that  
 make sense.

 In terms of battery archetypes, thats another problem because  
 batterys tend to vary between labs (certainly here in Australia  
 anyway.)  I would expect that it might be templates that solve this  
 problem with the archetype providing something more generic.  Coding  
 of the analytes would then make sense so that you can compare  
 different result sets.  This could be also solved by producing  
 archetypes for each analyte and then reusing them for different  
 batteries.  This would then mean that P-ALAT is the same archetype  
 where ever it is used.  Personally, I think the coded solution is  
 better here as we would have fewer archetypes to manage.

 regards Hugh



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Huigsloterdijk 378
2158 LR Buitenkaag
The Netherlands

T: +31 252544896
M: +31 620347088
E: gfrer at luna.nl


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Decision Support was: MIE-2008

2008-06-12 Thread Hugh Leslie
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Decision Support was: MIE-2008

2008-06-12 Thread Daniel Karlsson
Hi Hugh,

ok, you got me ;), I tried but I could not find a case were there would
have been a value in knowing that two standings are (more or less) the
same, I think because the word standing is so obviously *well-enough*
defined in everyday English, even for a Swede! But what about e.g. the
various laboratory battery archetypes? I would think that to know when
there is an overlap between batteries is a good thing. E.g.
P-ALAT;cat.c. would be in at least a couple of batteries.

Also, I do not see this as a problem of bad or good archetyping, but as
an archetyping reproducibility problem.

Hi Gerard,

the problem, as I see it, is that the vocabulary have semantic
structures attached whether it is represented or not and these semantics
may interact with the semantics of the archetype, hence the grey zone.
As it is hard to draw the line reproducibly and as the boundaries may
move as both archetypes and terminologies evolve, some overlap may be
another good thing.

As a conclusion I would like to agree with Hugh that terminology needs
information models and vice versa and that the focus now should be to
build consensus on the areas surrounding the grey zone.

/Daniel

On Wed, 2008-06-11 at 09:23 +1000, Hugh Leslie wrote:
 Hi Daniel
 
 I would be interested in a real world use case where you need to know
 that standing has the same meaning in two different archetypes.  If
 archetypes are designed properly, then the semantics of the model are
 self contained as a single concept.  Specialisations of the model will
 maintain the same meaning of the contained elements, and the semantics
 of the contained elements relate to the whole concept.  I would
 contend, that in any examples where the same element needs to have the
 same meaning across different archetypes, it is probably because the
 design of the archetype is bad.
 
 Coding everything to that level has great implications in terms of
 cost - not only in terms of development, but also in terms of
 maintenance.  If there are compelling real world use cases for doing
 this, lets do it, otherwise lets do what is pragmatic and gets the job
 done as soon as possible.
 
 regards Hugh
 
  
 
 Daniel Karlsson wrote: 
  Hugh,
   
  

   The argument comes when you say that every data point in an archetype
   needs to be coded and here there are arguments both ways.  I would say
   that it is unnecessary to code every data point.  There is little
   benefit for instance in coding sitting, lying, standing, reclining n a
   blood pressure archetype.  The archetype contrains the value of
   position to these four values.  The values are in context and their
   meaning is clear to anyone using this archetype.  Translation is much
   easier as the archetype gives an absolute context for the meaning of
   the term.  Coding these terms in SNOMED would be so that you can query
   your health record for every standing item?  Its pretty unlikely
   that this would be a useful requirement.  Coding everything s going to
   be a very slow and enormously expensive process to get right.  It
   makes translation of archetypes much more difficult, especially for
   those many countries that don't (yet) have a SNOMED translation.
   Building archetypes is proving to be a very rapid and useful process.
   
  
  I think that there can be more reasons for binding archetype nodes to
  external terminologies apart from information re-use requirements in the
  query for everything standing example, e.g. to be able to express that
  standing in one archetype has the same meaning as standing in
  another archetype.
  
  Also, I didn't realise that I said that everything necessarily should be
  coded. Referring to David Markwell's report, he states (more or less)
  that things in the grey zone should be represented redundantly but he
  also states that terminology binding requirements should be driven by
  information re-use requirements. I agree with him on both points.
  
  /Daniel
  
  
  
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  openEHR-technical at openehr.org
  http://lists.chime.ucl.ac.uk/mailman/listinfo/openehr-technical
  
  

 
 -- 
  
 Dr Hugh Leslie MBBS, Dip. Obs. RACOG, FRACGP, FACHI 
 Clinical Director 
 Ocean Informatics Pty Ltd 
 M: +61 404 033 767   E: hugh.leslie at oceaninformatics.com  W:
 www.oceaninformatics.com 
 
 
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Decision Support was: MIE-2008

2008-06-11 Thread Hugh Leslie
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Decision Support was: MIE-2008

2008-06-11 Thread Gerard Freriks
Dear  Daniel,

yes, I said that the grey zone is a relic of the past,
It is there and we have to deal with it.
But that is not to say that it must stay the same.

To my mind we have to be aware that when dealing with semantics and IT  
we must stay close to the eons proven way to do things.
For eons we have had as semantic ingredients:
- a list of words (nouns and verbs) plus modifiers (adverbs,  
adjectives): dictionary/vocabulary
- a syntaxis/grammar
- ways to define what makes sense.

The list of words/dictionary/vocabulary defined the concepts building  
block to be used in grammar.
Using words and grammar we could produce sentences and express what we  
had to express.
But we could produce sensical and non-sensical combinations of words  
and grammar in sentences.
Therefor we had ways to select and use only the sensical sentences.  
And these are archetypes and templates.
Archetypes and templates -in addition- provide the patterns (types of  
sentences) that can be used in healthcare to document observations,  
evaluations, instructions, and actions.

We must think very carefully whether it is wise to have two grammars  
at the same time.
Archetypes and templates have on one hand the role of grammar and the  
pattern used for documenting.
What is a compelling reason to combine the role of a code-list with  
that of grammar in SNOMED?
Does SNOMED have a rich enough grammar?
As rich as archetypes and templates allow?
Does it has a way to deal with patterns?

Isn't it a solution for the grey zone problem to accept that from now  
on we use SNOMED as a code list / vocabulary, that eventually helps us  
reasoning because of the ontological features?
And that archetypes and templates are the grammar and the expression  
patterns?
Coding systems are a fact of life.
Archetypes and templates are a fact of life.
Both need a natural role.

Isn't this suggestion the most practical way to deal with the grey  
zone in the future?

Gerard

On Jun 10, 2008, at 9:55 PM, Daniel Karlsson wrote:

 I didn't say that the grey zone is a relic of the past but, quite
 differently, a fact we need to acknowledge and relate to. The main
 reason: terminologies are not just merely dictionaries but make
 assumptions of semantics that interact with assumptions of semantics
 made in archetypes. Also, in terminological languages, representations
 of the semantics may be processed formally.



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T: +31 252544896
M: +31 620347088
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Decision Support was: MIE-2008

2008-06-10 Thread Daniel Karlsson
Dear Everyone,

just to add another perspective, in the Galen project post coordination
was the norm while IHTSDO sits on a heritage of some 300 000 things
Snomed CT needs to take care of. Also, pre-coordination is (I think)
required for making fixed length identifiers. Still, Snomed CT is
unusable without post-coordination, making pre-coordinated entities for
everything in Snomed CT that has laterality would mean approcimately 700
000 entities.

/Daniel


On Thu, 2008-06-05 at 20:19 +1000, Hugh Leslie wrote:
 Hi Stef,
 
 SNOMED can be pre or post co-ordinated.  A pre coordinated term is
 something like left foot where the side is included as part of the
 whole code and there is a separate term for right foot.  There are
 many such codes in SNOMED.  A post coordinated term is one which is
 described by a number of codes i.e. foot, left.  This can get as
 complex as you like such as this example from wikipedia
 284196006|Burn of skin|:
246112005|Severity|=24484000|severe,
363698007|Finding Site|=
  (113185004|Structure of skin between fourth and fifth 
 toes|:272741003|Laterality|=7771000|left)
 We believe that building and querying for these complex post
 coordinated sentences is very difficult.  The marriage of archetypes
 and terminology is a good one as much of the complexity of trying to
 express these things in a terminology can be expressed more simply
 using an archetype with the terminology enabling inferencing.  
 
 hope this helps
 
 regards Hugh
 
 Stef Verlinden wrote: 
  Hi Ian and Gerard, 
  
  
  Could you please explain what post-coordination is and maybe provide
  an example of post- (and pre-?) coordination?
  
  
  Cheers,
  
  
  Stef
  
  Op 5-jun-2008, om 0:48 heeft Ian McNicoll het volgende geschreven:
  
most
   post-coordination (using modifiers in Snomed-space instead of
   Archetype/Template space) must end,
  
  
  
  
  
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 -- 
  
 Dr Hugh Leslie MBBS, Dip. Obs. RACOG, FRACGP, FACHI 
 Clinical Director 
 Ocean Informatics Pty Ltd 
 M: +61 404 033 767   E: hugh.leslie at oceaninformatics.com  W:
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Decision Support was: MIE-2008

2008-06-10 Thread Daniel Karlsson
?
 In order to solve it we must look forward and reduce the 'grey zone'
 by acknowledging that most post-coordination (using modifiers in
 Snomed-space instead of Archetype/Template space) must end.
 
 
 Gerard

Realizing that the current Snomed CT Concept Model is not enough (today,
unfortunately by far) and that the tools for supporting constrained
post-coordination mainly are lacking, at least Snomed CT provides *some*
constraints on semantics in areas where openEHR provides none. Also, the
suggestion by David Markwell, I believe, is to represent semantics in
Snomed space *as well as* in the archetype space.

Also, I firmly believe that the grey zone will always exist as it is
the result of the concurrent use of two different models of semantics.
Thus, the boundary problem will not be solved, rather we will have to
develop methods that makes the grey zone related problems less
harmful.

Regards,
Daniel 

-- 
Daniel Karlsson, PhD
Department of Biomedical Engineering/Medical Informatics
Link?pings universitet
SE-58185 Link?ping
Sweden
Ph. +46 13 227573, +46 70 8350109






Decision Support was: MIE-2008

2008-06-10 Thread Hugh Leslie
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Decision Support was: MIE-2008

2008-06-10 Thread Daniel Karlsson
Hugh,
 

 The argument comes when you say that every data point in an archetype
 needs to be coded and here there are arguments both ways.  I would say
 that it is unnecessary to code every data point.  There is little
 benefit for instance in coding sitting, lying, standing, reclining n a
 blood pressure archetype.  The archetype contrains the value of
 position to these four values.  The values are in context and their
 meaning is clear to anyone using this archetype.  Translation is much
 easier as the archetype gives an absolute context for the meaning of
 the term.  Coding these terms in SNOMED would be so that you can query
 your health record for every standing item?  Its pretty unlikely
 that this would be a useful requirement.  Coding everything s going to
 be a very slow and enormously expensive process to get right.  It
 makes translation of archetypes much more difficult, especially for
 those many countries that don't (yet) have a SNOMED translation.
 Building archetypes is proving to be a very rapid and useful process.

I think that there can be more reasons for binding archetype nodes to
external terminologies apart from information re-use requirements in the
query for everything standing example, e.g. to be able to express that
standing in one archetype has the same meaning as standing in
another archetype.

Also, I didn't realise that I said that everything necessarily should be
coded. Referring to David Markwell's report, he states (more or less)
that things in the grey zone should be represented redundantly but he
also states that terminology binding requirements should be driven by
information re-use requirements. I agree with him on both points.

/Daniel






Decision Support was: MIE-2008

2008-06-10 Thread Thilo Schuler
Hi Daniel, Hugh et al.

A couple of weeks ago I started a section on the wiki to collect use
cases for terminology mappings from archetypes:

http://www.openehr.org/wiki/display/healthmod/Archetypes+and+Terminology#ArchetypesandTerminology-Usecasesforterminologyreferencesinarchetypes

IMHO this is a very important topic and it would be good if the people
following this thread could use it to share their ideas in the wiki.

Cheers, Thilo

On Tue, Jun 10, 2008 at 3:52 PM, Daniel Karlsson
daniel.karlsson at imt.liu.se wrote:
 Hugh,


 The argument comes when you say that every data point in an archetype
 needs to be coded and here there are arguments both ways.  I would say
 that it is unnecessary to code every data point.  There is little
 benefit for instance in coding sitting, lying, standing, reclining n a
 blood pressure archetype.  The archetype contrains the value of
 position to these four values.  The values are in context and their
 meaning is clear to anyone using this archetype.  Translation is much
 easier as the archetype gives an absolute context for the meaning of
 the term.  Coding these terms in SNOMED would be so that you can query
 your health record for every standing item?  Its pretty unlikely
 that this would be a useful requirement.  Coding everything s going to
 be a very slow and enormously expensive process to get right.  It
 makes translation of archetypes much more difficult, especially for
 those many countries that don't (yet) have a SNOMED translation.
 Building archetypes is proving to be a very rapid and useful process.

 I think that there can be more reasons for binding archetype nodes to
 external terminologies apart from information re-use requirements in the
 query for everything standing example, e.g. to be able to express that
 standing in one archetype has the same meaning as standing in
 another archetype.

 Also, I didn't realise that I said that everything necessarily should be
 coded. Referring to David Markwell's report, he states (more or less)
 that things in the grey zone should be represented redundantly but he
 also states that terminology binding requirements should be driven by
 information re-use requirements. I agree with him on both points.

 /Daniel



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Decision Support was: MIE-2008

2008-06-10 Thread Gerard Freriks
Dear colleague,

I agree with you that the grey zone is a relic from the past we have  
to deal with.
Never the less, I want to argue that we have to reduce this grey-zone.
By means of my suggestion to do post-coordination as much as possible  
in the archetype.

The main reason is:
- In language post coordination is done in the syntaxis and not in the  
dictionary.

Gerard

On Jun 10, 2008, at 9:37 AM, Daniel Karlsson wrote:

 Realizing that the current Snomed CT Concept Model is not enough  
 (today,
 unfortunately by far) and that the tools for supporting constrained
 post-coordination mainly are lacking, at least Snomed CT provides  
 *some*
 constraints on semantics in areas where openEHR provides none. Also,  
 the
 suggestion by David Markwell, I believe, is to represent semantics in
 Snomed space *as well as* in the archetype space.

 Also, I firmly believe that the grey zone will always exist as it is
 the result of the concurrent use of two different models of semantics.
 Thus, the boundary problem will not be solved, rather we will have  
 to
 develop methods that makes the grey zone related problems less
 harmful.

 Regards,
 Daniel



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Gerard Freriks, MD
Huigsloterdijk 378
2158 LR Buitenkaag
The Netherlands

T: +31 252544896
M: +31 620347088
E: gfrer at luna.nl


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Safety, deserve neither Liberty nor Safety. Benjamin Franklin 11 Nov  
1755





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2008-06-10 Thread Gerard Freriks
leslie,

I agree with the statement below.

Gerard

On Jun 10, 2008, at 10:06 AM, Hugh Leslie wrote:

 openEHR needs SNOMED and I believe that SNOMED needs archetypes.   
 The decision will be where archetypes and SNOMED should begin and  
 end and I think there will be a lot of debate in the next year or so!



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Huigsloterdijk 378
2158 LR Buitenkaag
The Netherlands

T: +31 252544896
M: +31 620347088
E: gfrer at luna.nl


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Decision Support was: MIE-2008

2008-06-05 Thread Ian McNicoll
Hi Gerard,

I agree with most of your comments and in principle that  most
post-coordination (using modifiers in Snomed-space instead of
Archetype/Template space) must end, this amounts to heresy in a UK
context and I think we should be prepared to regard David Markwell's
Grey Zone as a contested area for some time. I think we could waste a
lot of energy in trying to reduce the grey zone and might be better
served by allowing dual-representation in both openEHR paths and
Snomed post-coordination, and concentrating our efforts on the clearer
areaswhere one approach is obviously better than the other. I would
rather present Snomed-openEHR as the productive marriage of 2 noble
families, whose sum is greater than the parts, whilst accepting that
there will remain on-going jockeying for position in the 'border
lands'.

Ian (joyfully mixing his metaphors)


2008/6/3 Gerard Freriks gfrer at luna.nl:
 Hi,
 Free text versus structured data and information debate:
 - Like Ian said: Archetypes and templates take away problems from the
 IT-domain and leave them for those in healthcare.
 When those in health need, want decision support they will have to use more
 structured info.
 In the end they will solve their own problems.
 - We, in the archetype world, will have to show the way.
 Timo's thoughts are providing ways to think.
 Archetypes used must be able to serve many purposes:
 recording, retrieval, exchange, archiving and re-use for among others
 decision support.
 - The boundary problem has to be solved.
 Davids 'grey zone' must be reduced to a manageable small zone.
 We can not change the past and must find ways to deal with pre-historic
 (pre-archetype) data.
 In order to solve it we must look forward and reduce the 'grey zone'
 by acknowledging that most post-coordination (using modifiers in
 Snomed-space instead of Archetype/Template space) must end.
 Gerard

 On Jun 3, 2008, at 7:43 AM, Sam Heard wrote:

 Terminology
 A final part of the equation is the area that David Markwell has been
 working on in the NHS in the UK. He is investigating how to generate
 computable terminology code phrases from an archetype: that is, how to
 post-coordinate information captured in an archetype for inferencing in the
 terminology space. This has benefit in linking with the pre-archetype data
 and may allow complex research to be undertaken in the future using
 ontological tools and engines.

 So we need to keep the balance between freedom and structure, recognising
 (as Ian McNicoll says) that good archetypes take the problem out of the
 technical space to where it becomes a human (and potentially soluble) issue.

 Cheers, Sam


 -- private --
 Gerard Freriks, MD
 Huigsloterdijk 378
 2158 LR Buitenkaag
 The Netherlands
 T: +31 252544896
 M: +31 620347088
 E: gfrer at luna.nl

 Those who would give up essential Liberty, to purchase a little temporary
 Safety, deserve neither Liberty nor Safety. Benjamin Franklin 11 Nov 1755





 ___
 openEHR-technical mailing list
 openEHR-technical at openehr.org
 http://lists.chime.ucl.ac.uk/mailman/listinfo/openehr-technical





-- 
Dr Ian McNicoll
office +44(0)141 560 4657
fax +44(0)141 560 4657
mobile +44 (0)775 209 7859
skype ianmcnicoll

Consultant - Ocean Informatics ian.mcnicoll at oceaninformatics.com
Consultant - IRIS GP Accounts

Member of BCS Primary Health Care Specialist Group ? http://www.phcsg.org




Decision Support was: MIE-2008

2008-06-05 Thread Stef Verlinden
Hi Ian and Gerard,

Could you please explain what post-coordination is and maybe provide  
an example of post- (and pre-?) coordination?

Cheers,

Stef

Op 5-jun-2008, om 0:48 heeft Ian McNicoll het volgende geschreven:

  most
 post-coordination (using modifiers in Snomed-space instead of
 Archetype/Template space) must end,

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Decision Support was: MIE-2008

2008-06-05 Thread Hugh Leslie
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Decision Support was: MIE-2008

2008-06-05 Thread Gerard Freriks
Ian,

I agree.
But my wished outcome is clear.

And of course we have to deal with the past.
But the sooner we, ...

Gerard

On Jun 5, 2008, at 12:48 AM, Ian McNicoll wrote:

 Hi Gerard,

 I agree with most of your comments and in principle that  most
 post-coordination (using modifiers in Snomed-space instead of
 Archetype/Template space) must end, this amounts to heresy in a UK
 context and I think we should be prepared to regard David Markwell's
 Grey Zone as a contested area for some time. I think we could waste a
 lot of energy in trying to reduce the grey zone and might be better
 served by allowing dual-representation in both openEHR paths and
 Snomed post-coordination, and concentrating our efforts on the clearer
 areaswhere one approach is obviously better than the other. I would
 rather present Snomed-openEHR as the productive marriage of 2 noble
 families, whose sum is greater than the parts, whilst accepting that
 there will remain on-going jockeying for position in the 'border
 lands'.

 Ian (joyfully mixing his metaphors)



-- private --
Gerard Freriks, MD
Huigsloterdijk 378
2158 LR Buitenkaag
The Netherlands

T: +31 252544896
M: +31 620347088
E: gfrer at luna.nl


Those who would give up essential Liberty, to purchase a little  
temporary
Safety, deserve neither Liberty nor Safety. Benjamin Franklin 11 Nov  
1755





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Decision Support was: MIE-2008

2008-06-03 Thread Chunlan Ma
Hi Thilo,

See my comments inline below...

 -Original Message-
 From: openehr-technical-bounces at openehr.org [mailto:openehr-technical-
 bounces at openehr.org] On Behalf Of Thilo Schuler
 Sent: Monday, June 02, 2008 11:12 PM
 To: heath.frankel at oceaninformatics.com; For openEHR technical
 discussions
 Cc: timothywayne.cook at gmail.com
 Subject: Re: Decision Support was: MIE-2008
 
 Yes, agree on the querying ... and for querying we need structured
 content!
 
 As Sam and I noticed before this has to be considered when designing
 archetypes. This doesn't mean there shouldn't be free-text fields,
 this is a very valid requirement in clinical medicine!


[Chunlan Ma] Agree with this requirement. However, we have to be very
careful when we allow free text in archetypes because more free-text fields
would have less control over data quality. Currently, data quality is an
issue and I believe that archetypes will play a very important role in
resolving this issue. However, if we provide more free-text fields than
necessary, then we may loss one of the advantages of using archetypes. Even
though all text fields can be either free-text or coded text, there should
be some rules/guidelines suggesting what kinds of fields can be free-text,
coded-text or both. Whether a text field is defined appropriately should be
assessed during archetype governance process. What I am saying is that
carefully defining a text field is not only for the purpose of DSS, it is
also for data quality control.

Chunlan

 
 Thus, when designing archtypes the art is to find the balance between
 free-text (max. flexibility) and structured content. In my mind  we
 often have to offer *both* in an archetype. If I want to create a
 local application with lots of DSS I create a template that uses
 mostly the structured parts of the archetype. If I want maximum
 freedom I use mostly the free-text parts.
 
 Another scenario is that I receive information from another
 archetype-enabled system: The receiving system doesn't know whether
 the sending system had used the archtype in a flexible (free-text) or
 in a structured way. To allow the receiving system to decide whether
 it can use DSS with this information I see two options:
 1) We have a root archetype that optionally offers both (free-text and
 structured) and we specialise a DSS optimised archetype from it. So
 only if the DSS optimised archetype was used, much DSS is can be
 offered.
 2) Or we create generic archetype design patterns with switch-like
 constructs (i.e. if this option option was chosen I can rely on these
 other attributes to be available as well) so the receiving system's
 DSS engine can do a kind of archetype-introspection to decide what it
 can use and what not.
 
 Just early thoughts. What do others think?
 
 
 On Mon, Jun 2, 2008 at 9:55 AM, Heath Frankel
 heath.frankel at oceaninformatics.com wrote:
  Thilo,
  I think the key thing that needs to be considered in Archetype design
 to
  support Decision Support is querying.
 
  Heath
 
  -Original Message-
  From: openehr-technical-bounces at openehr.org [mailto:openehr-
 technical-
  bounces at openehr.org] On Behalf Of Thilo Schuler
  Sent: Saturday, 31 May 2008 8:13 PM
  To: timothywayne.cook at gmail.com; For openEHR technical discussions
  Subject: Re: Decision Support was: MIE-2008
 
  I am also interested. I wonder how much decision support has to be
  considered when designing archetypes. In the near and midterm future
  decision support will probably mostly happen on a local (i.e.
  template) level, but I still assume that there should be design
  patterns of the underlying archetypes that make local decision
 support
  feasible.
 
  -Thilo
 
  On Sat, May 31, 2008 at 1:38 AM, Tim Cook
 timothywayne.cook at gmail.com
  wrote:
  
   On Fri, 2008-05-30 at 15:19 +0100, Sam Heard wrote:
   I wonder if we should have a particular list for people who are
  interested
  in working with openEHR from a decision support point of view.
   This may not be appropriate just yet but I believe it will
 generate a
  considerably different intellectual space. I wonder what others
 think?
  
   I am certainly interested.  It is the core of my interest semantic
   information management in healthcare and my primary driver for
 being
   involved in the EGADSS project http://egadss.sourceforge.net/
   Though I was out voted by HL7v3 and Arden Syntax MLM proponents so
 I
   left the project.
  
  
  
   --
   Timothy Cook, MSc
   Health Informatics Research  Development Services
   LinkedIn Profile:http://www.linkedin.com/in/timothywaynecook
   Skype ID == timothy.cook
   **
   *You may get my Public GPG key from  popular keyservers or   *
   *from this link http://timothywayne.cook.googlepages.com/home*
   **
  
   ___
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Decision Support was: MIE-2008

2008-06-03 Thread Sam Heard
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Decision Support was: MIE-2008

2008-06-03 Thread Gerard Freriks
Hi,

Free text versus structured data and information debate:
- Like Ian said: Archetypes and templates take away problems from the  
IT-domain and leave them for those in healthcare.
When those in health need, want decision support they will have to use  
more structured info.
In the end they will solve their own problems.

- We, in the archetype world, will have to show the way.
Timo's thoughts are providing ways to think.
Archetypes used must be able to serve many purposes:
recording, retrieval, exchange, archiving and re-use for among others  
decision support.

- The boundary problem has to be solved.
Davids 'grey zone' must be reduced to a manageable small zone.
We can not change the past and must find ways to deal with pre- 
historic (pre-archetype) data.
In order to solve it we must look forward and reduce the 'grey zone'  
by acknowledging that most post-coordination (using modifiers in  
Snomed-space instead of Archetype/Template space) must end.

Gerard


On Jun 3, 2008, at 7:43 AM, Sam Heard wrote:

 Terminology
 A final part of the equation is the area that David Markwell has  
 been working on in the NHS in the UK. He is investigating how to  
 generate computable terminology code phrases from an archetype: that  
 is, how to post-coordinate information captured in an archetype for  
 inferencing in the terminology space. This has benefit in linking  
 with the pre-archetype data and may allow complex research to be  
 undertaken in the future using ontological tools and engines.

 So we need to keep the balance between freedom and structure,  
 recognising (as Ian McNicoll says) that good archetypes take the  
 problem out of the technical space to where it becomes a human (and  
 potentially soluble) issue.

 Cheers, Sam



-- private --
Gerard Freriks, MD
Huigsloterdijk 378
2158 LR Buitenkaag
The Netherlands

T: +31 252544896
M: +31 620347088
E: gfrer at luna.nl


Those who would give up essential Liberty, to purchase a little  
temporary
Safety, deserve neither Liberty nor Safety. Benjamin Franklin 11 Nov  
1755





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Decision Support was: MIE-2008

2008-06-02 Thread Seref Arikan
Hi Sam,
Boosted clinical process is a nice term indeed, maybe another  alternative
would be augmented clinical process, inspired by augmented reality, which
could probably have interesting applications in healthcare.
I should say that I am not sure if I have made my mind about the outcomes of
demand pull vs supply push  when it comes to initiatives like OpenEHR. On
one hand you are right about the requirement for having EHR working, on the
other hand a piece of software that benefits from a subset of the standard
may help increase the adoption of it.
I'd really like to see the outcomes of a little project which would be about
porting a simple existing decision support system to an OpenEHR based
infrastructure. Warning against adverse drug events for patient safety would
be a good target for example. (mostly) rewriting this kind of app would
give  valuable feedback to archetype designers and also standard
developers.  A very rough idea at the moment, but I'd like to give this a
try in a year or two, when I settle things in other fronts a little bit
more.
In case any member of this group have a candidate app for a trial like this,
I'd be delighted to get some pointers for future work.

Regards
Seref


On Mon, Jun 2, 2008 at 12:04 AM, Sam Heard sam.heard at oceaninformatics.com
wrote:

  Hi Seref,

 The two things that openEHR offers decision support are:

- Formal statement of context (in so far as the reference model has
captured it)
   - see Context Model of Recording p35 of the EHR 
 IMhttp://www.openehr.org/releases/1.0.1/architecture/rm/ehr_im.pdf
- The meaning of the information as expressed in a shared set of
archetypes.

 Obviously use of a standard terminology adds further value.

 By leveraging on these two aspects, and with terminology inferencing, it is
 possible to build:

- A Virtual EHR interface that allows reading, writing and querying of
an EHR which can be made available to decision support modules. This 
 service
interface provides a means of determining the state of health of a person 
 as
expressed in their health record and also writing notifications, monitoring
etc. in the EHR. For many years Pete Johnson has been working on this 
 aspect
using HL7 and more recently CDA using terminology - the problem is context.
- It is important in real applications that the Virtual EHR separates
out what is in the EHR and what is being collected today, what has been
written by the clinician and what by the decision support, work flow steps
etc.

 Thomas Beale said a long time ago that the problem with Health Informatics
 is that it doesn't really exist - everyone just goes and builds their own
 applications, taking little or no heed as to what has gone before. Further,
 there is no real understanding of what is required of the platform on which
 to base the added value of decision support, care pathways etc. I believe
 that openEHR can provide the spring board for major advances in decision
 support.

 Archetype designers do need to be aware of the data requirements of
 decision support and workflow - or what might be best termed *the
 'boosted' clinical process*. I like the idea of 'boosted' as it does imply
 making something good better. At present there is not a lot of demand as we
 have no platform on which to base it.

 I believe the boosted clinical process is the next area to get sorted once
 we have the EHR working nicely!!

 Cheers, Sam

 Seref Arikan wrote:

 Hi,
 That's an interesting question, and honestly, my knowledge of archetypes is
 a little bit rusty to comment on this. However, there are other aspects of
 OpenEHR related work which I find worthy of discussing in the context of
 decision support.
 A decision support system is built on top of other layers like ETL which
 transfers, transforms and updates data that is used by machine learning
 tools and analysis purposes. The same data is sometimes subject to
 transformation to OLAP cubes, on which you may again execute machine
 learning algorithms and/or data mining.
 Information fed by these systems to a decision support system reaches its
 final destination where it becomes a driving force in the decision making
 process.
 The thing is, this connection from data to decision support engine
 requrires lots of interfaces. Interfaces to different sources of data, which
 for example may use different persistence approaches. Feeding data to such a
 pipeline direclty from archetypes would be an interesting challange. Or
 performance impact of various persistence approaches in the context of this
 pipeline, OLAP, etc is worth discussing.
 My favorite tool Weka, is a machine learning workbench, and everytime I use
 it for some kind of data, I have to import and transform (make continious
 data concrete etc) data. I can't help imagining what would happen if I had a
 version of Weka that allowed me to connect to an OpenEHR based repository.
 In short, this is a quite broad field, 

Decision Support was: MIE-2008

2008-06-02 Thread Tim Cook

On Mon, 2008-06-02 at 00:41 +0300, Seref Arikan wrote:

 In case any member of this group have a candidate app for a trial like
 this, I'd be delighted to get some pointers for future work. 

I was going to save this for the decision support mailing list. But
since you asked ... :-)

The EVIDENCE-BASED GUIDELINES AND DECISION SUPPORT SYSTEM (EGADSS)
[Yeah we thought it was a cool acronym too!]  Is a project that I worked
on up until we came to some obvious disagreements over implementation.
But the concepts are valid and proven. 
See: http://egadss.sourceforge.net/


The basic concept is that an EMR sends a basic known set of information
about a patient to the DSS.  The DSS processes whatever clinical
guidelines it knows about using the CLIPS Inference Engine
http://clipsrules.sourceforge.net/ and if it finds something applicable
to this patient it processes the guideline.  If it needs more
information (lab results etc.) it sends a request back to the EMR.  The
guideline analysis is completed and instructions returned to the EMR. 

A re-implementation of this engine using GLIF instead of Arden Syntax
guideline encoding and using an openEHR EHR Extract instead of the CDA
for messaging is certainly in my future plans.

Cheers,
Tim
   


-- 
Timothy Cook, MSc
Health Informatics Research  Development Services
LinkedIn Profile:http://www.linkedin.com/in/timothywaynecook 
Skype ID == timothy.cook 
**
*You may get my Public GPG key from  popular keyservers or   *
*from this link http://timothywayne.cook.googlepages.com/home*
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Decision Support was: MIE-2008

2008-06-02 Thread Tim Cook

On Mon, 2008-06-02 at 09:45 -0300, Tim Cook wrote:

 A re-implementation of this engine using GLIF instead of Arden Syntax
 guideline encoding 

BTW: I am not including/excluding other possibilities here. PROforma is
a prime candidate but even after reading John Fox's book Safe and
Sound: Artificial Intelligence in Hazardous Applications,

 http://mitpress.mit.edu/book-home.tcl?isbn=0262062119 

I was still confused but very interested.  :-)

--Tim


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Decision Support was: MIE-2008

2008-06-02 Thread Karsten Hilbert
On Mon, Jun 02, 2008 at 09:48:17AM -0300, Tim Cook wrote:

  I'd really like to see the outcomes of a little project which would be
  about porting a simple existing decision support system to an OpenEHR
  based infrastructure. Warning against adverse drug events for patient
  safety would be a good target for example. (mostly) rewriting this
  kind of app would give  valuable feedback to archetype designers and
  also standard developers. 
 
 Doing adverse drug reactions isn't too tough of a technical problem.  It
 is however a MASSIVE knowledge problem.  Using clinical guidelines to
 determine things like immunization adherence etc is a much butter place
 to start IMHO.

Full ACK.

Karsten
-- 
GPG key ID E4071346 @ wwwkeys.pgp.net
E167 67FD A291 2BEA 73BD  4537 78B9 A9F9 E407 1346



Decision Support was: MIE-2008

2008-06-02 Thread Karsten Hilbert
On Mon, Jun 02, 2008 at 09:45:08AM -0300, Tim Cook wrote:

 The EVIDENCE-BASED GUIDELINES AND DECISION SUPPORT SYSTEM (EGADSS)

 The basic concept is that an EMR sends a basic known set of information
 about a patient to the DSS.  The DSS processes whatever clinical
 guidelines it knows about using the CLIPS Inference Engine
 http://clipsrules.sourceforge.net/ and if it finds something applicable
 to this patient it processes the guideline.  If it needs more
 information (lab results etc.) it sends a request back to the EMR.  The
 guideline analysis is completed and instructions returned to the EMR. 

That's precisely how I would want a DSS to work for
interfacing it with GNUmed. When I last looked at EGADSS (a
year or so ago) it looked like they wanted me to use their
own GUI not just for defining guidelines but also make the
user use their GUI to check for guideline adherence of
patients handed over from an EMR.

IOW, I couldn't find any documentation on how to get
instructions back into GNUmed. Any pointers ?

 A re-implementation of this engine using GLIF instead of Arden Syntax
 guideline encoding and using an openEHR EHR Extract instead of the CDA
 for messaging is certainly in my future plans.

Looking forward to that.

Karsten
-- 
GPG key ID E4071346 @ wwwkeys.pgp.net
E167 67FD A291 2BEA 73BD  4537 78B9 A9F9 E407 1346



Decision Support was: MIE-2008

2008-06-02 Thread Thilo Schuler
Yes, agree on the querying ... and for querying we need structured content!

As Sam and I noticed before this has to be considered when designing
archetypes. This doesn't mean there shouldn't be free-text fields,
this is a very valid requirement in clinical medicine!

Thus, when designing archtypes the art is to find the balance between
free-text (max. flexibility) and structured content. In my mind  we
often have to offer *both* in an archetype. If I want to create a
local application with lots of DSS I create a template that uses
mostly the structured parts of the archetype. If I want maximum
freedom I use mostly the free-text parts.

Another scenario is that I receive information from another
archetype-enabled system: The receiving system doesn't know whether
the sending system had used the archtype in a flexible (free-text) or
in a structured way. To allow the receiving system to decide whether
it can use DSS with this information I see two options:
1) We have a root archetype that optionally offers both (free-text and
structured) and we specialise a DSS optimised archetype from it. So
only if the DSS optimised archetype was used, much DSS is can be
offered.
2) Or we create generic archetype design patterns with switch-like
constructs (i.e. if this option option was chosen I can rely on these
other attributes to be available as well) so the receiving system's
DSS engine can do a kind of archetype-introspection to decide what it
can use and what not.

Just early thoughts. What do others think?


On Mon, Jun 2, 2008 at 9:55 AM, Heath Frankel
heath.frankel at oceaninformatics.com wrote:
 Thilo,
 I think the key thing that needs to be considered in Archetype design to
 support Decision Support is querying.

 Heath

 -Original Message-
 From: openehr-technical-bounces at openehr.org [mailto:openehr-technical-
 bounces at openehr.org] On Behalf Of Thilo Schuler
 Sent: Saturday, 31 May 2008 8:13 PM
 To: timothywayne.cook at gmail.com; For openEHR technical discussions
 Subject: Re: Decision Support was: MIE-2008

 I am also interested. I wonder how much decision support has to be
 considered when designing archetypes. In the near and midterm future
 decision support will probably mostly happen on a local (i.e.
 template) level, but I still assume that there should be design
 patterns of the underlying archetypes that make local decision support
 feasible.

 -Thilo

 On Sat, May 31, 2008 at 1:38 AM, Tim Cook timothywayne.cook at gmail.com
 wrote:
 
  On Fri, 2008-05-30 at 15:19 +0100, Sam Heard wrote:
  I wonder if we should have a particular list for people who are
 interested
 in working with openEHR from a decision support point of view.
  This may not be appropriate just yet but I believe it will generate a
 considerably different intellectual space. I wonder what others think?
 
  I am certainly interested.  It is the core of my interest semantic
  information management in healthcare and my primary driver for being
  involved in the EGADSS project http://egadss.sourceforge.net/
  Though I was out voted by HL7v3 and Arden Syntax MLM proponents so I
  left the project.
 
 
 
  --
  Timothy Cook, MSc
  Health Informatics Research  Development Services
  LinkedIn Profile:http://www.linkedin.com/in/timothywaynecook
  Skype ID == timothy.cook
  **
  *You may get my Public GPG key from  popular keyservers or   *
  *from this link http://timothywayne.cook.googlepages.com/home*
  **
 
  ___
  openEHR-technical mailing list
  openEHR-technical at openehr.org
  http://lists.chime.ucl.ac.uk/mailman/listinfo/openehr-technical
 
 
 ___
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 openEHR-technical at openehr.org
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 ___
 openEHR-technical mailing list
 openEHR-technical at openehr.org
 http://lists.chime.ucl.ac.uk/mailman/listinfo/openehr-technical




Decision Support was: MIE-2008

2008-06-02 Thread Tim Cook

On Mon, 2008-06-02 at 15:14 +0200, Karsten Hilbert wrote:

 That's precisely how I would want a DSS to work for
 interfacing it with GNUmed. When I last looked at EGADSS (a
 year or so ago) it looked like they wanted me to use their
 own GUI not just for defining guidelines but also make the
 user use their GUI to check for guideline adherence of
 patients handed over from an EMR.
 
 IOW, I couldn't find any documentation on how to get
 instructions back into GNUmed. Any pointers ?

once upon a time there was a pretty good demo online and it appeared to
adhere to the initial concepts.  As I said; I left the project due to
the chosen implementation strategy.  I am therefore not 100% certain how
it works in implementation now.  I don't hold out much hope for a
collaborative open source community around this project though.

**
In full disclosure though; for those thinking about using EGADSS.
I was recently asked (a few weeks ago) to facilitate a conference call
with EGADSS people and the FreeMED Foundation in order for the
Foundation to gain some open source project management position and move
the project forward.  In my investigation of the status of EGADSS I
found that it is only being used as a tool in Dr. Jankhe's computer
science courses at this time.  Dr. Jankhe is the one that took over my
position as project technical lead and drove the implementation in it's
current direction.  I was never able to build any real open source
mindset within the group and left in frustration.  Dr. Jankhe had told
me in one of our first meetings that he could never promote open source
because Microsoft was a major contributor to his computer science
program.  You can take all this for what it is worth and maybe the
FreeMED Foundation will be able to rekindle some open source energy in
the project?  Either way, I believe a re-implementation is the best way
to go.  As Paul Harvey ( http://www.paulharvey.com/ )would say; Now you
know, the rest of the story. :-)   



Cheers,
Tim 



-- 
Timothy Cook, MSc
Health Informatics Research  Development Services
LinkedIn Profile:http://www.linkedin.com/in/timothywaynecook 
Skype ID == timothy.cook 
**
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Decision Support was: MIE-2008

2008-06-01 Thread Sam Heard
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Decision Support was: MIE-2008

2008-05-31 Thread Thomas Beale
Tim Cook wrote:
 On Fri, 2008-05-30 at 15:19 +0100, Sam Heard wrote:
   
 I wonder if we should have a particular list for people who are interested 
 in working with openEHR from a decision support point of view. 
 This may not be appropriate just yet but I believe it will generate a 
 considerably different intellectual space. I wonder what others think?
 

   
*ok, well I think that's a vote in favour... i'll ask for 
openehr-decisionsupport at openehr.org

- thomas beale

*




Decision Support was: MIE-2008

2008-05-31 Thread Thilo Schuler
I am also interested. I wonder how much decision support has to be
considered when designing archetypes. In the near and midterm future
decision support will probably mostly happen on a local (i.e.
template) level, but I still assume that there should be design
patterns of the underlying archetypes that make local decision support
feasible.

-Thilo

On Sat, May 31, 2008 at 1:38 AM, Tim Cook timothywayne.cook at gmail.com 
wrote:

 On Fri, 2008-05-30 at 15:19 +0100, Sam Heard wrote:
 I wonder if we should have a particular list for people who are interested 
 in working with openEHR from a decision support point of view.
 This may not be appropriate just yet but I believe it will generate a 
 considerably different intellectual space. I wonder what others think?

 I am certainly interested.  It is the core of my interest semantic
 information management in healthcare and my primary driver for being
 involved in the EGADSS project http://egadss.sourceforge.net/
 Though I was out voted by HL7v3 and Arden Syntax MLM proponents so I
 left the project.



 --
 Timothy Cook, MSc
 Health Informatics Research  Development Services
 LinkedIn Profile:http://www.linkedin.com/in/timothywaynecook
 Skype ID == timothy.cook
 **
 *You may get my Public GPG key from  popular keyservers or   *
 *from this link http://timothywayne.cook.googlepages.com/home*
 **

 ___
 openEHR-technical mailing list
 openEHR-technical at openehr.org
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Decision Support was: MIE-2008

2008-05-31 Thread Seref Arikan
Hi,
That's an interesting question, and honestly, my knowledge of archetypes is
a little bit rusty to comment on this. However, there are other aspects of
OpenEHR related work which I find worthy of discussing in the context of
decision support.
A decision support system is built on top of other layers like ETL which
transfers, transforms and updates data that is used by machine learning
tools and analysis purposes. The same data is sometimes subject to
transformation to OLAP cubes, on which you may again execute machine
learning algorithms and/or data mining.
Information fed by these systems to a decision support system reaches its
final destination where it becomes a driving force in the decision making
process.
The thing is, this connection from data to decision support engine requrires
lots of interfaces. Interfaces to different sources of data, which for
example may use different persistence approaches. Feeding data to such a
pipeline direclty from archetypes would be an interesting challange. Or
performance impact of various persistence approaches in the context of this
pipeline, OLAP, etc is worth discussing.
My favorite tool Weka, is a machine learning workbench, and everytime I use
it for some kind of data, I have to import and transform (make continious
data concrete etc) data. I can't help imagining what would happen if I had a
version of Weka that allowed me to connect to an OpenEHR based repository.
In short, this is a quite broad field, for which I'd love to exchange ideas
with others in a list created for this particular subject.

All the best
Seref

On Sat, May 31, 2008 at 1:43 PM, Thilo Schuler thilo.schuler at gmail.com
wrote:

 I am also interested. I wonder how much decision support has to be
 considered when designing archetypes. In the near and midterm future
 decision support will probably mostly happen on a local (i.e.
 template) level, but I still assume that there should be design
 patterns of the underlying archetypes that make local decision support
 feasible.

 -Thilo

 On Sat, May 31, 2008 at 1:38 AM, Tim Cook timothywayne.cook at gmail.com
 wrote:
 
  On Fri, 2008-05-30 at 15:19 +0100, Sam Heard wrote:
  I wonder if we should have a particular list for people who are
 interested in working with openEHR from a decision support point of view.
  This may not be appropriate just yet but I believe it will generate a
 considerably different intellectual space. I wonder what others think?
 
  I am certainly interested.  It is the core of my interest semantic
  information management in healthcare and my primary driver for being
  involved in the EGADSS project http://egadss.sourceforge.net/
  Though I was out voted by HL7v3 and Arden Syntax MLM proponents so I
  left the project.
 
 
 
  --
  Timothy Cook, MSc
  Health Informatics Research  Development Services
  LinkedIn Profile:http://www.linkedin.com/in/timothywaynecook
  Skype ID == timothy.cook
  **
  *You may get my Public GPG key from  popular keyservers or   *
  *from this link http://timothywayne.cook.googlepages.com/home*
  **
 
  ___
  openEHR-technical mailing list
  openEHR-technical at openehr.org
  http://lists.chime.ucl.ac.uk/mailman/listinfo/openehr-technical
 
 
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Decision Support was: MIE-2008

2008-05-30 Thread Tim Cook

On Fri, 2008-05-30 at 15:19 +0100, Sam Heard wrote:
 I wonder if we should have a particular list for people who are interested in 
 working with openEHR from a decision support point of view. 
 This may not be appropriate just yet but I believe it will generate a 
 considerably different intellectual space. I wonder what others think?

I am certainly interested.  It is the core of my interest semantic
information management in healthcare and my primary driver for being
involved in the EGADSS project http://egadss.sourceforge.net/ 
Though I was out voted by HL7v3 and Arden Syntax MLM proponents so I
left the project.  

 

-- 
Timothy Cook, MSc
Health Informatics Research  Development Services
LinkedIn Profile:http://www.linkedin.com/in/timothywaynecook 
Skype ID == timothy.cook 
**
*You may get my Public GPG key from  popular keyservers or   *
*from this link http://timothywayne.cook.googlepages.com/home*
**
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