Re: [PyMOL] Dashed/Dotted Lines for Ribbon Representation

[Yang Su]

I see. It would be nice to have the cartoon_flat_sheets effect on the loop
and tube variants, too. I like the looks of it. Maybe in a future version
:-)

Thanks,
Yang

On Thu, Apr 19, 2018 at 4:30 PM, Thomas Holder <
thomas.hol...@schrodinger.com> wrote:

> Hi Yang,
>
> That's an interesting observation, I wasn't aware that cartoon dash and
> loop may be traced differently. Apparently the "cartoon_flat_sheets"
> setting only applies to dash, not loop. Turning it off will make them
> follow the same path:
>
> set cartoon_flat_sheets, 0
>
> Cheers,
>   Thomas
>
> > On Apr 19, 2018, at 4:15 PM, Yang Su  wrote:
> >
> > Also, 'cartoon dash' and 'cartoon loop' render beta-strands differently,
> so I can't combine the two and get a consistent look and feel. The use case
> is to show regions of the structure as dashed line to indicate 'not covered
> in study'. I can't use different colors for this purpose because color
> coding is already used to represent other properties.
> >
> > Best,
> > Yang
> >
> > On Thu, Apr 19, 2018 at 3:56 PM, Yang Su  wrote:
> > Thanks for the tip, Thomas. 'cartoon dash' works with cartoon
> representation, but doesn't seem to affect the ribbon representation. For
> some use cases I like the 'cornered' ribbon representation better than the
> smooth cartoon representation, but cartoon is still a good alternative if
> it is not possible to show ribbon as dashed/dotted lines.
> >
> > Thanks,
> > Yang
> >
> >
> > On Thu, Apr 19, 2018 at 1:54 PM, Thomas Holder <
> thomas.hol...@schrodinger.com> wrote:
> > Hi Yang,
> >
> > Yes, since PyMOL 1.8.2 there is "cartoon dash". e.g.:
> >
> > fetch 1ubq, async=0
> > as cartoon
> > cartoon dash
> >
> > See also:
> > https://pymolwiki.org/index.php/Cartoon#USAGE
> >
> > Cheers,
> >   Thomas
> >
> > > On Apr 19, 2018, at 12:54 PM, Yang Su  wrote:
> > >
> > > Hi,
> > >
> > > Is there an option to show the ribbon as dashed or dotted lines in
> pymol?
> > >
> > > Thanks,
> > >
> > > Yang
>
> --
> Thomas Holder
> PyMOL Principal Developer
> Schrödinger, Inc.
>
>
--
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Re: [PyMOL] Dashed/Dotted Lines for Ribbon Representation

[Thomas Holder]

Hi Yang,

That's an interesting observation, I wasn't aware that cartoon dash and loop 
may be traced differently. Apparently the "cartoon_flat_sheets" setting only 
applies to dash, not loop. Turning it off will make them follow the same path:

set cartoon_flat_sheets, 0

Cheers,
  Thomas

> On Apr 19, 2018, at 4:15 PM, Yang Su  wrote:
> 
> Also, 'cartoon dash' and 'cartoon loop' render beta-strands differently, so I 
> can't combine the two and get a consistent look and feel. The use case is to 
> show regions of the structure as dashed line to indicate 'not covered in 
> study'. I can't use different colors for this purpose because color coding is 
> already used to represent other properties.
> 
> Best,
> Yang
> 
> On Thu, Apr 19, 2018 at 3:56 PM, Yang Su  wrote:
> Thanks for the tip, Thomas. 'cartoon dash' works with cartoon representation, 
> but doesn't seem to affect the ribbon representation. For some use cases I 
> like the 'cornered' ribbon representation better than the smooth cartoon 
> representation, but cartoon is still a good alternative if it is not possible 
> to show ribbon as dashed/dotted lines.
> 
> Thanks,
> Yang
> 
> 
> On Thu, Apr 19, 2018 at 1:54 PM, Thomas Holder 
>  wrote:
> Hi Yang,
> 
> Yes, since PyMOL 1.8.2 there is "cartoon dash". e.g.:
> 
> fetch 1ubq, async=0
> as cartoon
> cartoon dash
> 
> See also:
> https://pymolwiki.org/index.php/Cartoon#USAGE
> 
> Cheers,
>   Thomas
> 
> > On Apr 19, 2018, at 12:54 PM, Yang Su  wrote:
> > 
> > Hi,
> > 
> > Is there an option to show the ribbon as dashed or dotted lines in pymol?
> > 
> > Thanks,
> > 
> > Yang

--
Thomas Holder
PyMOL Principal Developer
Schrödinger, Inc.


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Re: [PyMOL] Dashed/Dotted Lines for Ribbon Representation

[Yang Su]

Also, 'cartoon dash' and 'cartoon loop' render beta-strands differently, so
I can't combine the two and get a consistent look and feel. The use case is
to show regions of the structure as dashed line to indicate 'not covered in
study'. I can't use different colors for this purpose because color coding
is already used to represent other properties.

Best,
Yang

On Thu, Apr 19, 2018 at 3:56 PM, Yang Su  wrote:

> Thanks for the tip, Thomas. 'cartoon dash' works with cartoon
> representation, but doesn't seem to affect the ribbon representation. For
> some use cases I like the 'cornered' ribbon representation better than the
> smooth cartoon representation, but cartoon is still a good alternative if
> it is not possible to show ribbon as dashed/dotted lines.
>
> Thanks,
> Yang
>
>
> On Thu, Apr 19, 2018 at 1:54 PM, Thomas Holder <
> thomas.hol...@schrodinger.com> wrote:
>
>> Hi Yang,
>>
>> Yes, since PyMOL 1.8.2 there is "cartoon dash". e.g.:
>>
>> fetch 1ubq, async=0
>> as cartoon
>> cartoon dash
>>
>> See also:
>> https://pymolwiki.org/index.php/Cartoon#USAGE
>>
>> Cheers,
>>   Thomas
>>
>> > On Apr 19, 2018, at 12:54 PM, Yang Su  wrote:
>> >
>> > Hi,
>> >
>> > Is there an option to show the ribbon as dashed or dotted lines in
>> pymol?
>> >
>> > Thanks,
>> >
>> > Yang
>>
>> --
>> Thomas Holder
>> PyMOL Principal Developer
>> Schrödinger, Inc.
>>
>>
>
--
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Re: [PyMOL] Dashed/Dotted Lines for Ribbon Representation

[Yang Su]

Thanks for the tip, Thomas. 'cartoon dash' works with cartoon
representation, but doesn't seem to affect the ribbon representation. For
some use cases I like the 'cornered' ribbon representation better than the
smooth cartoon representation, but cartoon is still a good alternative if
it is not possible to show ribbon as dashed/dotted lines.

Thanks,
Yang


On Thu, Apr 19, 2018 at 1:54 PM, Thomas Holder <
thomas.hol...@schrodinger.com> wrote:

> Hi Yang,
>
> Yes, since PyMOL 1.8.2 there is "cartoon dash". e.g.:
>
> fetch 1ubq, async=0
> as cartoon
> cartoon dash
>
> See also:
> https://pymolwiki.org/index.php/Cartoon#USAGE
>
> Cheers,
>   Thomas
>
> > On Apr 19, 2018, at 12:54 PM, Yang Su  wrote:
> >
> > Hi,
> >
> > Is there an option to show the ribbon as dashed or dotted lines in pymol?
> >
> > Thanks,
> >
> > Yang
>
> --
> Thomas Holder
> PyMOL Principal Developer
> Schrödinger, Inc.
>
>
--
Check out the vibrant tech community on one of the world's most
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Re: [PyMOL] Dashed/Dotted Lines for Ribbon Representation

[Thomas Holder]

Hi Yang,

Yes, since PyMOL 1.8.2 there is "cartoon dash". e.g.:

fetch 1ubq, async=0
as cartoon
cartoon dash

See also:
https://pymolwiki.org/index.php/Cartoon#USAGE

Cheers,
  Thomas

> On Apr 19, 2018, at 12:54 PM, Yang Su  wrote:
> 
> Hi,
> 
> Is there an option to show the ribbon as dashed or dotted lines in pymol?
> 
> Thanks,
> 
> Yang

--
Thomas Holder
PyMOL Principal Developer
Schrödinger, Inc.


--
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