Re: [R] loess
On Tue, 25 May 2004, Rupen Shrestha wrote: When I was running the function loess(y~x, span=0.0020), I got a warning message k-d tree limited by memory. ncmax= 4231 Does that mean the function has not been computed correctly ? If it has not, is there any way to adjust it so that it will do correctly ? It was computed a little inaccurately. You can alter many things: see ?loess.control, especially its first item. *However*, that span is so small that this makes little sense, with too few neighbours for any visually apparent smoothing. -- Brian D. Ripley, [EMAIL PROTECTED] Professor of Applied Statistics, http://www.stats.ox.ac.uk/~ripley/ University of Oxford, Tel: +44 1865 272861 (self) 1 South Parks Road, +44 1865 272866 (PA) Oxford OX1 3TG, UKFax: +44 1865 272595 __ [EMAIL PROTECTED] mailing list https://www.stat.math.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide! http://www.R-project.org/posting-guide.html
Re: [R] yeardays
On Tue, 25 May 2004, Steve Su wrote: Is there a R (Windows) equivalent of yeardays in Splus 6.0 for Windows? I am using XP. You could tell us what that did ... that version of S-PLUS (sic) is long obselete and most readers will not have access to it (or any other recent version of S-PLUS). It would appear to be one plus the yday component of a POSIXlt object, so as.POSIXlt(x)$yday + 1 should be equivalent. See ?months for relevant comments. -- Brian D. Ripley, [EMAIL PROTECTED] Professor of Applied Statistics, http://www.stats.ox.ac.uk/~ripley/ University of Oxford, Tel: +44 1865 272861 (self) 1 South Parks Road, +44 1865 272866 (PA) Oxford OX1 3TG, UKFax: +44 1865 272595 __ [EMAIL PROTECTED] mailing list https://www.stat.math.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide! http://www.R-project.org/posting-guide.html
Re: [R] Scheire-Ray-Hare extension to Kruskal-Wallis
Sarah Skikne [EMAIL PROTECTED] writes: Hi, I was wondering if it was possible to do the Scheirer-Ray-Hare extension of the Kruskal-Wallis test using R, or if it was possible to use some other non-parametric test for the following situation: I have continuous data that is grouped by 2 factor variables. I would like a non-parametric test because the group variances are not equal. I would like to look for the effects of either factor variable and their interaction. It is a common misconception that nonparametric tests do not assume equal variances. In fact, they generally assume that entire distributions are the same (under the null hypothesis). Testing for interactions also pretty much assumes effects are on a particular scale, which is not really very different from making parametric assumptions. I'd consider a weighted linear model in such cases, possibly supplemented by simulation or bootstrapping to get an improved estimate of the p-values etc. -- O__ Peter Dalgaard Blegdamsvej 3 c/ /'_ --- Dept. of Biostatistics 2200 Cph. N (*) \(*) -- University of Copenhagen Denmark Ph: (+45) 35327918 ~~ - ([EMAIL PROTECTED]) FAX: (+45) 35327907 __ [EMAIL PROTECTED] mailing list https://www.stat.math.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide! http://www.R-project.org/posting-guide.html
[R] vectorize an expression
Hi guys. Another thing I cannot vectorize:
I have an array a, of size 5-by-2, for example, of 5 2D vectors. I
also have a distance function that computes the distance between two
vectors (usual Euclidean distance is a good example but I have other metrics I
want to use as well). I want a 5-by-5 array with the [i,j]th element being
the distance from a[i,] to a[j,]
To Wit:
a - matrix(1:10,5,2)
array - matrix(NA, 5, 5)
dist - function(x1,x2){sqrt(sum(x1-x2)^2)}
#NONVECTORIZED BIT FOLLOWS
for(i in 1:5) {
for(j in 1:5) {
array[i,j] - dist(a[i,] , a[j,])
}
}
(note that array[i,i]=0 for i=1:5 as expected).
How to vectorize this?
--
Robin Hankin
Uncertainty Analyst
Southampton Oceanography Centre
SO14 3ZH
tel +44(0)23-8059-7743
[EMAIL PROTECTED] (edit in obvious way; spam precaution)
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Re: [R] Hiding internal package functions for the doc. pkg-internal.Rd
Add \keyword{internal} to the Rd files you would like to hide from the
index. From section Documenting functions in Writing R Extensions (for
R v1.9.0):
\keyword{key}
Each \keyword entry should specify one of the standard keywords (as
listed in the file R_HOME/doc/KEYWORDS.db). There must be at least one
\keyword entry, but can be more that one if the R object being documented
falls into more than one category.
The special keyword 'internal' marks a page of internal objects that are
not part of the packages' API. If the help page for object foo has keyword
internal, then help(foo) gives this help page, but foo is excluded from
several object indices, like the alphabetical list of objects in the HTML
help system.
Cheers
Henrik Bengtsson
Dept. of Mathematical Statistics @ Centre for Mathematical Sciences
Lund Institute of Technology/Lund University, Sweden (+2h UTC)
+46 46 2229611 (off), +46 708 909208 (cell), +46 46 2224623 (fax)
h b @ m a t h s . l t h . s e, http://www.maths.lth.se/~hb/
On Tue, 25 May 2004, Wolski wrote:
Hallo!
I would like that the internal package functions does not appear in the
documentation.
I placed they names as aliases in the file nameofmypackage-internal.Rd as advised.
After R CMD check (which runs neatly) they are still listed in 00Index.html.
Is there no way to hide internal functions from the doc?
Have I overlook something?
Sincerely Eryk.
Dipl. bio-chem. Eryk Witold Wolski@MPI-Moleculare Genetic
Ihnestrasse 63-73 14195 Berlin 'v'
tel: 0049-30-83875219 / \
mail: [EMAIL PROTECTED]---W-Whttp://www.molgen.mpg.de/~wolski
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[R] Histogram
Dear all, I have a surprising problem with the representation of frequencies in a histogram. Consider, for example, the R code: b-rnorm(2000,3.5,0.3) hist(b,freq=F) When I plotted the histogram, I expected that values in the y-axis (the probability) varied between 0 and 1. Instead, they varied within the range 0-1.3. Have you got any suggestion for obtaining a correct graph with probability within the range 0-1? Thank you very much! Bests /Cristian/ = Cristian Pattaro = Unit of Epidemiology Medical Statistics Department of Medicine and Public Health University of Verona http://biometria.univr.it [EMAIL PROTECTED] = [[alternative HTML version deleted]] __ [EMAIL PROTECTED] mailing list https://www.stat.math.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide! http://www.R-project.org/posting-guide.html
Re: [R] Histogram
Cristian Pattaro wrote: Dear all, I have a surprising problem with the representation of frequencies in a histogram. Consider, for example, the R code: b-rnorm(2000,3.5,0.3) hist(b,freq=F) When I plotted the histogram, I expected that values in the y-axis (the probability) varied between 0 and 1. Instead, they varied within the range 0-1.3. Have you got any suggestion for obtaining a correct graph with probability within the range 0-1? Note that width * height (and *not* the height solely) corresponds to the probability in a histogram. Uwe Ligges Thank you very much! Bests /Cristian/ = Cristian Pattaro = Unit of Epidemiology Medical Statistics Department of Medicine and Public Health University of Verona http://biometria.univr.it [EMAIL PROTECTED] = [[alternative HTML version deleted]] __ [EMAIL PROTECTED] mailing list https://www.stat.math.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide! http://www.R-project.org/posting-guide.html __ [EMAIL PROTECTED] mailing list https://www.stat.math.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide! http://www.R-project.org/posting-guide.html
Re: [R] Histogram
On Tue, 25 May 2004 12:27:40 +0200 Cristian Pattaro wrote: Dear all, I have a surprising problem with the representation of frequencies in a histogram. Consider, for example, the R code: b-rnorm(2000,3.5,0.3) hist(b,freq=F) When I plotted the histogram, I expected that values in the y-axis (the probability) varied between 0 and 1. Instead, they varied within the range 0-1.3. The y-axis gives the density not the probability! And the density you are sampling from has R dnorm(3.5, mean = 3.5, sd = 0.3) [1] 1.329808 so you shouldn't be surprised by this. Z Have you got any suggestion for obtaining a correct graph with probability within the range 0-1? Thank you very much! Bests /Cristian/ = Cristian Pattaro = Unit of Epidemiology Medical Statistics Department of Medicine and Public Health University of Verona http://biometria.univr.it [EMAIL PROTECTED] = [[alternative HTML version deleted]] __ [EMAIL PROTECTED] mailing list https://www.stat.math.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide! http://www.R-project.org/posting-guide.html __ [EMAIL PROTECTED] mailing list https://www.stat.math.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide! http://www.R-project.org/posting-guide.html
RE: [R] Histogram
On 25-May-04 Cristian Pattaro wrote: I have a surprising problem with the representation of frequencies in a histogram. Consider, for example, the R code: b-rnorm(2000,3.5,0.3) hist(b,freq=F) When I plotted the histogram, I expected that values in the y-axis (the probability) varied between 0 and 1. Instead, they varied within the range 0-1.3. Have you got any suggestion for obtaining a correct graph with probability within the range 0-1? It depends on the widths of the bins, since what is plotted in the histogram when freq=F is vertically scaled so that sum over bins of h*(width of bin) = 1 where h is the height of the histogram bar according to the vertical scale. In other words, hist plots a per-bin estimate of the probability density in the sense of amount of probability per bin divided by width of bin. If your bin widths are narrow (and your SD above is 0,3, so you will get quite narrow bins, 0.2 in this case) and you may well get values exceeding 1. Exactly, indeed, as for the density of the normal distribution itself: (1/(sqrt(2*pi)*sigma))*exp(-0.5* ... ) where small values of sigma give density 1 near x=0. If you need the actual value of the probabilities in the bins (i.e. n_i/N) then you can force it by constructing a new hist object on the lines of h-hist(b,freq=F) h$counts - h$counts/sum(h$counts) plot(h) When I do this with your above example, whereas the original gives a y-axis from 0 to 1.2 with the tallest bar at about 1.3, plot(h) give exactly the same graph but with the y-axis labelled from 0 to 0.25, with the tallest bar at 0.2625, which shows the probabilities. Best wishes, Ted. E-Mail: (Ted Harding) [EMAIL PROTECTED] Fax-to-email: +44 (0)870 167 1972 Date: 25-May-04 Time: 12:15:20 -- XFMail -- __ [EMAIL PROTECTED] mailing list https://www.stat.math.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide! http://www.R-project.org/posting-guide.html
Re: [R] Tramo-seats
On Monday 24 May 2004 22:07, Paul Bivand wrote: On Monday 24 May 2004 11:00, [EMAIL PROTECTED] wrote: ... Now - to start with - a first problem to solve: we have to comply with the Tramo-seats closed-source procedure (http://www.bde.es/informes/be/docs/dt0014e.pdf) to deal with seasonality of electricity monthly time-series, in line with the methodology officially adopted by our National Bureau of Statistics. Searching in R-help mailing list I didn't find anything about a tramo-seats R version. Does anyone know of unofficial R translation of tramo-seats? OR What do you suggest? Vittorio Not an R response I'm afraid, but have you looked at Demetra http://forum.europa.eu.int/irc/dsis/eurosam/info/data/demetra.htm which appears to be an officially sponsored windows-only implementation of Tramo-seats and X-12 ARIMA. The licence is not clear from the website, but it looks free as in beer but probably not open source. Paul Bivand Paul, Thanks for your answer. As a matter of fact Demetra (tramo-seats is not definetely open source!) is what we are currently using but, you know, this doesn't match our desire to move to R from many other licenced pieces of software! Ciao Vittorio __ [EMAIL PROTECTED] mailing list https://www.stat.math.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide! http://www.R-project.org/posting-guide.html
Re: [R] vectorize an expression
apply(a,1,function(y)apply(a,1,function(x)dist(x,y)))
Robin Hankin rksh at soc.soton.ac.uk writes:
:
: Hi guys. Another thing I cannot vectorize:
:
: I have an array a, of size 5-by-2, for example, of 5 2D vectors. I
: also have a distance function that computes the distance between two
: vectors (usual Euclidean distance is a good example but I have other metrics
I
: want to use as well). I want a 5-by-5 array with the [i,j]th element being
: the distance from a[i,] to a[j,]
:
: To Wit:
:
:a - matrix(1:10,5,2)
:array - matrix(NA, 5, 5)
:dist - function(x1,x2){sqrt(sum(x1-x2)^2)}
:
:#NONVECTORIZED BIT FOLLOWS
:for(i in 1:5) {
: for(j in 1:5) {
:array[i,j] - dist(a[i,] , a[j,])
: }
:}
:
: (note that array[i,i]=0 for i=1:5 as expected).
:
: How to vectorize this?
:
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[R] Tramo-seats
Hi, take a look at gretl (http://gretl.sourceforge.net/), which integrates econometrics, X-12-ARIMA, TRAMO/SEATS and R. Vytautas Maniusis, Vilnius University, Lithuania __ [EMAIL PROTECTED] mailing list https://www.stat.math.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide! http://www.R-project.org/posting-guide.html
[R] Tramo-seats support in GRETL, but not R
On Mon, 24 May 2004 12:00:46 +0200 [EMAIL PROTECTED] wrote: Working - among other things- in the field of (short long term) electricity forecast, * * * we have to comply with the Tramo-seats closed-source procedure (http://www.bde.es/informes/be/docs/dt0014e.pdf) to deal with seasonality of electricity monthly time-series, in line with the methodology officially adopted by our National Bureau of Statistics. Searching in R-help mailing list I didn't find anything about a tramo-seats R version. As a former forecaster of electric and water consumption, I too have been down the SAS and SPSS road. I don't know of an R interface to Tramo-seats, but the open-source econometric language GRETL supports Tramo-seats and is designed to interchange data with R. GRETL was developed by Professor Alin Cottrell of Wake Forest University based on Professor Ramu Ramanathan's ESL source code. Tramo Seats may be installed to work with GRETL. GRETL (Gnu Regression, Econometrics and Time-series Library) http://gretl.sourceforge.net/ [GRETL] is a cross-platform software package for econometric analysis, written in the C programming language. It is is free software. You may redistribute it and/or modify it under the terms of the GNU General Public License (GPL) as published by the Free Software Foundation. * * * Easy intuitive interface (now in French, Italian and Spanish as well as English) or if you prefer http://gretl.sourceforge.net/gretl_italiano.html [GRETL] è un pacchetto software multi-piattaforma per l'analisi econometrica, scritto in linguaggio C. È software libero: è possibile redistribuirlo e/o modificarlo secondo i termini della Licenza Pubblica Generica GNU (GPL) pubblicata dalla Free Software Foundation. GRETL and GNU R http://gretl.sourceforge.net/gretl_and_R.html From gretl, you can save the current data set in a format suitable for analysis using R; you also have the option (Start GNU R under gretl's Utilities menu) of launching an R session with the current gretl data set automatically loaded into R's workspace. GRETL and Tramo Seats http://gretl.sourceforge.net/tramo/tramo-seats.html TRAMO stands for Time series Regression with ARIMA noise, Missing values and Outliers and SEATS for Signal Extraction in ARIMA Time Series. These programs (which are commonly used together) were developed by Victor Gómez and Agustín Maravall at the Bank of Spain. The home page for these programs is at www.bde.es. To quote the description given there, The programs are fundamentally aimed at monthly or lower frequency time series. Although structured to meet the needs of an expert analyst, they can be reliably used in an entirely automatic manner. The main applications are forecasting, seasonal adjustment, trend-cycle estimation, construction of composite leading indicators, interpolation, detection and correction of outliers, estimation of special effects, and quality control of data. and just for good measure... GRETL and X12 http://gretl.sourceforge.net/x12a/x12a.html X-12-ARIMA is the program currently used by the U.S. Census Bureau for seasonal adjustment. Working - among other things- in the field of (short long term) electricity forecast, we are now using too many too expensive pieces of licensed software: SAS, SPSS, EViews. This sedimentation is due to the fact that my predecessors in the past used different consultant companies to manage each procedure. Having attended the useR2004! Conference with the aim of assessing if R ALONE could glue all those fragmented and isolated procedures, I'm almost convinced now that YES it could do the job! Now - to start with - a first problem to solve: we have to comply with the Tramo-seats closed-source procedure ( http://www.bde.es/informes/be/docs/dt0014e.pdf) to deal with seasonality of electricity monthly time-series, in line with the methodology officially adopted by our National Bureau of Statistics. Searching in R-help mailing list I didn't find anything about a tramo-seats R version. Jim Callahan Management, Budget Accounting City of Orlando (407) 246-3039 office (407) 234-3744 cell phone [[alternative HTML version deleted]] __ [EMAIL PROTECTED] mailing list https://www.stat.math.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide! http://www.R-project.org/posting-guide.html
[R] equivalent of the Splus function eboulis()
Hi, Is there a equivalent of the function eboulis() (which is a new funtion on Splus) on R? Otherwise, with which function can we see the best number of cluster we have to choose? Thanks in advance, Nicolas BOUGET Accédez au courrier électronique de La Poste : www.laposte.net ; 3615 LAPOSTENET (0,34/mn) ; tél : 08 92 68 13 50 (0,34/mn) __ [EMAIL PROTECTED] mailing list https://www.stat.math.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide! http://www.R-project.org/posting-guide.html
[R] NLME
Hi everyone, Does the selfstart function SSlogis of the nlme library allows the introduction of time varying covariates ? For example how can I interpret the xmid parameter (reperesenting the age at which we reach the half of the asymptote) if I want to explain it by a some time varying covariate? Thanks in adavance, Abderrahim Abderrahim Oulhaj, Phd in Statistics Oxford University Department of Pharmacology Mansfield Road Oxford OX1 3QT Tel: +44 1865 224098 Fax: +44 1865 224099 Email: [EMAIL PROTECTED] [[alternative HTML version deleted]] __ [EMAIL PROTECTED] mailing list https://www.stat.math.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide! http://www.R-project.org/posting-guide.html
[R] Re: identify() in script
I want a script of mine to run identify(), and possibly switch to interactive mode at some point. Is it possible? in case you're interested, I found myself a solution for my problem. create a file (test.R) containing x=rnorm(100) y=rnorm(100) x11() plot( x,y ) identify(x,y,1:100) then $ R test.R will do the trick __ [EMAIL PROTECTED] mailing list https://www.stat.math.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide! http://www.R-project.org/posting-guide.html
Re: [R] equivalent of the Splus function eboulis()
On Tue, 25 May 2004, n.bouget wrote: Is there a equivalent of the function eboulis() (which is a new funtion on Splus) on R? There is no such function in the latest S-PLUS, version 6.2. Further, S-PLUS is an English product and `eboulis' appears to be French. Otherwise, with which function can we see the best number of cluster we have to choose? Please check out where you got that function from, and give us a description of what you are looking for. We cannot tell you the equivalent of a non-existent function (except to give you a list of non-existent R functions). -- Brian D. Ripley, [EMAIL PROTECTED] Professor of Applied Statistics, http://www.stats.ox.ac.uk/~ripley/ University of Oxford, Tel: +44 1865 272861 (self) 1 South Parks Road, +44 1865 272866 (PA) Oxford OX1 3TG, UKFax: +44 1865 272595 __ [EMAIL PROTECTED] mailing list https://www.stat.math.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide! http://www.R-project.org/posting-guide.html
[R] correlation coefficient of ARIMA() or GLS() ?
Hi R-helpers, I fitted the following ARIMA model onto de-seasonlised time series 1 and 2, which were strongly seasonal. How can the R² or the coefficient of determination for the structural term be calculated between these two fitted time series? Is an GLS() the solution (difference between ARIMA and GLS) ? Is it possible to calculated an R² from a GLS() model ? # nlme and MASS package *** reg.model - arima(serie2.dd, order=c(6,0,0), xreg = serie1.dd, method = ML) tsdiag(reg.model) # =looks OK. residuals are not autocorrelated (ljung-box statistic) but not normally distributed.Problem? reg.model Call: arima(x = serie2.dd, order = c(6, 0, 0), xreg = serie1.dd, method = ML) Coefficients: ar1 ar2 ar3 ar4 ar5 ar6 intercept serie1.dd -0.1033 -0.3957 -0.0423 -0.2719 -0.2969 -0.1401 -2.3535 585.9007 s.e. 0.0843 0.0823 0.0831 0.0857 0.0795 0.08293.1520 118.1323 sigma^2 estimated as 6932: log likelihood = -829.9, aic = 1677.79 gls.ddm2 - gls(serie2.ddm ~ serie1.ddm -1, correlation=corARMA(p=6), method=ML) # fit of a gls without intercept because the intercept was not significant but residuals are still auto correlated...?! Tips, advice or examples are mostly welcome. Many thanks in advance, Regards, Jan _ Jan Verbesselt Research Associate Lab of Geomatics and Forest Engineering K.U. Leuven Vital Decosterstraat 102. B-3000 Leuven Belgium Tel:+32-16-329750 Fax: +32-16-329760 http://gloveg.kuleuven.ac.be/ __ [EMAIL PROTECTED] mailing list https://www.stat.math.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide! http://www.R-project.org/posting-guide.html
Re: [R] equivalent of the Splus function eboulis()
This function already exists in the package multidim (see http://cran.r-project.org/doc/packages/multidim.pdf) What i want to do is to choose the good number of cluster after using the function hclust on 6934 instances. hc - hclust(dist(AGRIINSTTableFinaleCR), ward) I use the following expression barplot(sort((hc$height/sum(hc$height))*100,decreasing=TRUE)) and i choose as number of cluster the number before a big fall but i'm not sure that is the good mean to choose the number of cluster! On Tue, 25 May 2004, n.bouget wrote: Is there a equivalent of the function eboulis() (which is a new funtion on Splus) on R? There is no such function in the latest S-PLUS, version 6.2. Further, S-PLUS is an English product and `eboulis' appears to be French. Otherwise, with which function can we see the best number of cluster we have to choose? Please check out where you got that function from, and give us a description of what you are looking for. We cannot tell you the equivalent of a non-existent function (except to give you a list of non-existent R functions). -- Brian D. Ripley, [EMAIL PROTECTED] Professor of Applied Statistics, http://www.stats.ox.ac.uk/~ripley/ University of Oxford, Tel: +44 1865 272861 (self) 1 South Parks Road, +44 1865 272866 (PA) Oxford OX1 3TG, UKFax: +44 1865 272595 Accédez au courrier électronique de La Poste : www.laposte.net ; 3615 LAPOSTENET (0,34/mn) ; tél : 08 92 68 13 50 (0,34/mn) __ [EMAIL PROTECTED] mailing list https://www.stat.math.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide! http://www.R-project.org/posting-guide.html
Re: [R] vectorize an expression
Suggestion 1: Use the R function `dist'.
Suggestion 2: Don't mask an R system function name.
Suggestion 3: Time this. I don't think it is worth vectorizing.
Suggestion 4: The bit which is actually nonvectorized is your function
dist. If you had a vectorized distance function, you could do
for(i in 1:5) array[i,] - dist(a[i,,drop=FALSE] , a)
but that would need
dist - function(x1,x2) sqrt(rowSums(x1-x2)^2)
I could tell you how to fully vectorize it, but I doubt if it would have
any benefit.
(None of this is tested, because of 1 and 3.)
On Tue, 25 May 2004, Robin Hankin wrote:
Hi guys. Another thing I cannot vectorize:
I have an array a, of size 5-by-2, for example, of 5 2D vectors. I
also have a distance function that computes the distance between two
vectors (usual Euclidean distance is a good example but I have other metrics I
want to use as well). I want a 5-by-5 array with the [i,j]th element being
the distance from a[i,] to a[j,]
To Wit:
a - matrix(1:10,5,2)
array - matrix(NA, 5, 5)
dist - function(x1,x2){sqrt(sum(x1-x2)^2)}
#NONVECTORIZED BIT FOLLOWS
for(i in 1:5) {
for(j in 1:5) {
array[i,j] - dist(a[i,] , a[j,])
}
}
(note that array[i,i]=0 for i=1:5 as expected).
How to vectorize this?
--
Brian D. Ripley, [EMAIL PROTECTED]
Professor of Applied Statistics, http://www.stats.ox.ac.uk/~ripley/
University of Oxford, Tel: +44 1865 272861 (self)
1 South Parks Road, +44 1865 272866 (PA)
Oxford OX1 3TG, UKFax: +44 1865 272595
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Re: [R] equivalent of the Splus function eboulis()
But multidim is not part of S-PLUS, and it does seem to exist for R. So the equivalent of eboulis() in R is eboulis()! On Tue, 25 May 2004, [EMAIL PROTECTED] wrote: This function already exists in the package multidim (see http://cran.r-project.org/doc/packages/multidim.pdf) What i want to do is to choose the good number of cluster after using the function hclust on 6934 instances. hc - hclust(dist(AGRIINSTTableFinaleCR), ward) I use the following expression barplot(sort((hc$height/sum(hc$height))*100,decreasing=TRUE)) and i choose as number of cluster the number before a big fall but i'm not sure that is the good mean to choose the number of cluster! On Tue, 25 May 2004, n.bouget wrote: Is there a equivalent of the function eboulis() (which is a new funtion on Splus) on R? There is no such function in the latest S-PLUS, version 6.2. Further, S-PLUS is an English product and `eboulis' appears to be French. Otherwise, with which function can we see the best number of cluster we have to choose? Please check out where you got that function from, and give us a description of what you are looking for. We cannot tell you the equivalent of a non-existent function (except to give you a list of non-existent R functions). -- Brian D. Ripley, [EMAIL PROTECTED] Professor of Applied Statistics, http://www.stats.ox.ac.uk/~ripley/ University of Oxford, Tel: +44 1865 272861 (self) 1 South Parks Road, +44 1865 272866 (PA) Oxford OX1 3TG, UKFax: +44 1865 272595 Accédez au courrier électronique de La Poste : www.laposte.net ; 3615 LAPOSTENET (0,34/mn) ; tél : 08 92 68 13 50 (0,34/mn) -- Brian D. Ripley, [EMAIL PROTECTED] Professor of Applied Statistics, http://www.stats.ox.ac.uk/~ripley/ University of Oxford, Tel: +44 1865 272861 (self) 1 South Parks Road, +44 1865 272866 (PA) Oxford OX1 3TG, UKFax: +44 1865 272595 __ [EMAIL PROTECTED] mailing list https://www.stat.math.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide! http://www.R-project.org/posting-guide.html
Re: [R] RMySQL problem - SOLVED
Hi, The problem was the row.names that were sent to the database and created an primary key duplicate. Now it works fine. BTW congratulations for the package. It copied 15300 rows by 11 columns in less than 5 seconds, in my PIII 833 with 1 GB RAM. system.time(dbWriteTable(con, TBL_SIMDATA, TBL.SIMDATA, append = TRUE, row.names=F)) [1] 3.87 0.05 4.86 0.01 0.00 Just one suggestion. It would be usefull to have a more verbose output, maybe the LOAD DATA INFILE output. Thanks for your help. EJ On Tue, 2004-05-25 at 13:01, Sean Davis wrote: I have written tables with 10,000 rows before without incident, so I'm not sure what is going on--out of my league. Is this idiosyncratic to your data? In other words, can you load a simple 2-column table with 1 rows? If not, I would suggest writing R code to construct the 1 row toy example, write the table to MySQL, and then a dbReadTable and show that the number of rows is incorrect and post the code and results to the list. Sean On 5/25/04 7:24 AM, Ernesto Jardim [EMAIL PROTECTED] wrote: On Tue, 2004-05-25 at 11:00, Sean Davis wrote: The function that you are looking for is: help.search(writetable) Or whatever in quotes you like. Also, you can try help.start() which will give you the browser window with HTML versions of docs and a search facility. When you say import, what do you mean? Reading an Rdata file, a text file, or reading from mysql? I'm referring to the number of rows that R sent to MySQL with the dbWriteTable method. The dataframe has 13500 rows but when I do dbWriteTable(con, TBL_SIMDATA, TBL.SIMDATA, append = TRUE) [1] TRUE the TBL_SIMDATA table in MySQL has only 555 rows ... EJ Sean On 5/25/04 5:34 AM, Ernesto Jardim [EMAIL PROTECTED] wrote: Hi, I found the dbWriteTable function. Sorry for the work but I'm still trying to understand how the S4 documentation works. If you do help(package=RMySQL) the dbWriteTable method does not exist. It exists a dbReadTable method wich has an alias to dbWriteTable. It should be intuitive but it wasn't for me ... Now the method: I could only import 555 rows ... Is there some flag about the number of rows it can import ? Regards EJ On Mon, 2004-05-24 at 22:44, David James wrote: Hi, The method for dbWriteTable() uses the MySQL bulk loading faciliy LOAD DATA LOCAL INFILE to efficiently upload a file into the server. So you should be able to issue something like sim.result - big.simulation(...) dbWriteTable(con, table_name, sim.results, append = TRUE) to append the rows in sim.results into the MySQL table_name. However, I should mention that the currently implementation outputs the contents of the data.frame into a temporary file using the function write.table(), which in the past could be slow. Hope this helps, -- David Ernesto Jardim wrote: Hi, I'm using R 1.9.0 with RMySQL 0.5-4 and MySQL 3.23.55 on a suse 8.2 box. I have a simulation study and (as usual for newbies in simulation, I guess) I have a lot of data that I want to store in MySQL. I want to write an R script that reads data from RData files and writes it to a MySQL database. I read some R documents (R Data Import/Export and DSC papers) but I'm finding differences between the documents and the packages (RMySQL and DBI). I don't find the methods to write data like dbWriteTable... On the other hand I've tryied to build a sql statement to insert data but I'm stucked because of ... who knows, my ignorance probably. I want to take advantage of MySQl INSERT INTO statement that deals with several rows at once to insert a complete data.frame into a table. I've tryied to use paste to build the sql string but It works by column and I need it by row ... The sql systax should be something like: INSERT INTO TABLEA(COL1, COL2, COL3) VALUES (VAL11, VAL12, VAL13), (VAL21, VAL22, VAL23), ... (VALN1, VALN2, VALN3); and I have a data.frame with 3 columns corresponding to that table columns. How can I do this ? Thanks EJ __ [EMAIL PROTECTED] mailing list https://www.stat.math.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide! http://www.R-project.org/posting-guide.html __ [EMAIL PROTECTED] mailing list https://www.stat.math.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide! http://www.R-project.org/posting-guide.html __ [EMAIL PROTECTED] mailing list https://www.stat.math.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide! http://www.R-project.org/posting-guide.html
[R] Bivariate interpolation
Hello, Is there any other bivariate pointwise interpolation command besides akima's interpp? I tried to search through the J. Baron's page without luck. The problem is that I have got regularly spaced data (in x and y) what is not acceptable for interpp. I am not very much interested in the method of interpolation as the data are dense and the error would not be to high. Thanks in advance, Miha __ [EMAIL PROTECTED] mailing list https://www.stat.math.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide! http://www.R-project.org/posting-guide.html
[R] UseR 2004 Proceeding
In the past conference (i.e. DSC 2003) the proceedings were available for download. This year UseR website only has the abstracts of the papers. Does anybody know if the full text will be available for download? Thanks, Agustin Calatroni ;-) __ [EMAIL PROTECTED] mailing list https://www.stat.math.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide! http://www.R-project.org/posting-guide.html
[R] Agnes and Hclust
Hi, I want to know if there is a difference between the two hierarchical methods Agnes and hclust when there are used with the same method and the same metric on the same data! I ask this question because I executed the following program: hc - hclust(dist(AGRIINSTTableFinaleCR), ward) agnes-agnes(dist(AGRIINSTTableFinaleCR),method=ward) And clusters are not the same even if they are a little similar! Is anybody know why i have this difference? Thanks in advance Nicolas BOUGET Accédez au courrier électronique de La Poste : www.laposte.net ; 3615 LAPOSTENET (0,34/mn) ; tél : 08 92 68 13 50 (0,34/mn) __ [EMAIL PROTECTED] mailing list https://www.stat.math.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide! http://www.R-project.org/posting-guide.html
Re: [R] UseR 2004 Proceeding
On Tue, 2004-05-25 at 09:11, Agustin Calatroni wrote: In the past conference (i.e. DSC 2003) the proceedings were available for download. This year UseR website only has the abstracts of the papers. Does anybody know if the full text will be available for download? Thanks, Agustin Calatroni ;-) According to an announcement made on Saturday there will not be a proceedings. Some authors may post their complete presentation on their web sites (where available) or perhaps may be willing to e-mail their presentation in PDF format. You may be best served to contact the author(s) directly, if there is a particular paper you are interested in. HTH, Marc Schwartz __ [EMAIL PROTECTED] mailing list https://www.stat.math.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide! http://www.R-project.org/posting-guide.html
[R] Description of profiles ?
Hello together, I am working on liquid water profiles of clouds and would like to describe these profiles in relation to a reference profile. What is the best way to do this ? RMSE would equal positiv and negativ deviations. Is it better to use a correlation coefficient ? What is the best way, espacially when I want to find out profiles with the same behaviour / shape, which are just more or less shifted / just have a different mean value ? Thanks for your help in advance ! Klemens Dipl.-Geogr. Klemens Barfus Institute for Hydrology and Meteorology Technical University of Dresden Germany -- __ [EMAIL PROTECTED] mailing list https://www.stat.math.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide! http://www.R-project.org/posting-guide.html
Re: [R] Tramo-seats support in GRETL, but not R
FYI: GNU Gretl and GNU R are on every Debian mirror. My Quantian cdroms also have x12a (deb package derived from the rpm on Cottrell's gretl site) which is way less awkward to use via gretl than directly. However, tramo-seat _cannot_ be redistributed freely due to license issues. Pity. If anybody feels like petitioning the good folks at the Bank of Spain, go for it. Regards, Dirk -- The relationship between the computed price and reality is as yet unknown. -- From the pac(8) manual page __ [EMAIL PROTECTED] mailing list https://www.stat.math.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide! http://www.R-project.org/posting-guide.html
RE: [R] code for functions in base package
Hello My name is qamruz zaman and i want to see the codes of Kaplan meier and Bootstrap. Is it possible, if yes then please guide me step by step and also show me how to write my own functions. Bye __ [EMAIL PROTECTED] mailing list https://www.stat.math.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide! http://www.R-project.org/posting-guide.html
Re: [R] adress the current index
Mag. Ferri Leberl wrote: How can I adress the current index of a vector? I want to work with time series and therefore give the n-th element of a vector some value dependent on the value of the n-1th element. Sorry, your question is not really clear, but possibly the following may help: 1) If you have a vector x, you can create a shifted vector by removing the first element, e.g.: xnew - x[-1] + somevalue # or apply a function f(x[-1]) 2) The last element can be removed with: xnew - x[-length(x)] 3) ... and sometimes vector concatenation ?c or the ?ifelse function can be useful in such circumstances. Thomas P. PS: there is more about such things in the docs. __ [EMAIL PROTECTED] mailing list https://www.stat.math.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide! http://www.R-project.org/posting-guide.html
[R] readline
problem: readline does not work background: readline installed OK. R found it and listed as available library. when I start R none of the readline command editing is available, just raw sh editing. system: Solaris 9 on Sparc any help is appreciated. thanks stoyan __ [EMAIL PROTECTED] mailing list https://www.stat.math.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide! http://www.R-project.org/posting-guide.html
Re: [R] Bivariate interpolation
library(fields) ?interp.surface Best, Angel Miha STAUT wrote: Hello, Is there any other bivariate pointwise interpolation command besides akima's interpp? I tried to search through the J. Baron's page without luck. The problem is that I have got regularly spaced data (in x and y) what is not acceptable for interpp. I am not very much interested in the method of interpolation as the data are dense and the error would not be to high. Thanks in advance, Miha __ [EMAIL PROTECTED] mailing list https://www.stat.math.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide! http://www.R-project.org/posting-guide.html . __ [EMAIL PROTECTED] mailing list https://www.stat.math.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide! http://www.R-project.org/posting-guide.html
[R] Object silhouette.default not found. But I knew that it is there.
Hi! library(cluster) In this lib a function called silhoutte.default is defined than on the R prompt it type silhouette.default Error: Object silhouette.default not found R1.9.0 The same error are at R1.8.1 And I knew that a function silhoutte.default are present. But the same piece of code works in R1.6.2 ??? Eryk Dipl. bio-chem. Eryk Witold Wolski@MPI-Moleculare Genetic Ihnestrasse 63-73 14195 Berlin 'v' tel: 0049-30-83875219 / \ mail: [EMAIL PROTECTED]---W-Whttp://www.molgen.mpg.de/~wolski __ [EMAIL PROTECTED] mailing list https://www.stat.math.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide! http://www.R-project.org/posting-guide.html
Re: [R] readline
have you installed readline-dev ? In my Debian Linux I need libreadlin4-dev Cheers P.J. On Tue, 25 May 2004, Stoyan Iliev wrote: problem: readline does not work background: readline installed OK. R found it and listed as available library. when I start R none of the readline command editing is available, just raw sh editing. system: Solaris 9 on Sparc any help is appreciated. thanks stoyan __ [EMAIL PROTECTED] mailing list https://www.stat.math.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide! http://www.R-project.org/posting-guide.html Paulo Justiniano Ribeiro Jr Departamento de Estatística Universidade Federal do Paraná Caixa Postal 19.081 CEP 81.531-990 Curitiba, PR - Brasil Tel: (+55) 41 361 3471 Fax: (+55) 41 361 3141 e-mail: [EMAIL PROTECTED] http://www.est.ufpr.br/~paulojus __ [EMAIL PROTECTED] mailing list https://www.stat.math.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide! http://www.R-project.org/posting-guide.html
[R] useR! 2004 pictures online
Dear useRs, pictures from the first R user conference useR! 2004 are now available online at the conference web page: http://www.ci.tuwien.ac.at/Conferences/useR-2004/Photos/index.html Pictures from other participants will be included on the web page if they are sent to me. Feel free to contribute! Best wishes, Bettina __ [EMAIL PROTECTED] mailing list https://www.stat.math.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide! http://www.R-project.org/posting-guide.html
Re: [R] Object silhouette.default not found. But I knew that it is there.
Wolski wrote: Hi! library(cluster) In this lib a function called silhoutte.default is defined than on the R prompt it type silhouette.default Error: Object silhouette.default not found R1.9.0 The same error are at R1.8.1 And I knew that a function silhoutte.default are present. But the same piece of code works in R1.6.2 ??? Well, namespaces have been introduced in the meantime, and you have learned at the useR to call the generic silhouette() directly or to use cluster:::silhouette.default to get the code. Uwe Ligges Eryk Dipl. bio-chem. Eryk Witold Wolski@MPI-Moleculare Genetic Ihnestrasse 63-73 14195 Berlin 'v' tel: 0049-30-83875219 / \ mail: [EMAIL PROTECTED]---W-Whttp://www.molgen.mpg.de/~wolski __ [EMAIL PROTECTED] mailing list https://www.stat.math.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide! http://www.R-project.org/posting-guide.html __ [EMAIL PROTECTED] mailing list https://www.stat.math.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide! http://www.R-project.org/posting-guide.html
Re: [R] Object silhouette.default not found. But I knew that it is there.
Hi! Thanks! You right. Have not realised it. I do not wanted to call the function but I wanted to see the function definition. Its a great feature of R to be able to do it. I knew I cant do it because the function object is not in the namespace. Ive been confronted with the reverse side of namespaces. On the other hand: ?silhouette.default works. It would be nice to have a way to display to source without going into the library directory. Sincerely Eryk PS. *** REPLY SEPARATOR *** On 5/25/2004 at 6:17 PM Uwe Ligges wrote: Wolski wrote: Hi! library(cluster) In this lib a function called silhoutte.default is defined than on the R prompt it type silhouette.default Error: Object silhouette.default not found R1.9.0 The same error are at R1.8.1 And I knew that a function silhoutte.default are present. But the same piece of code works in R1.6.2 ??? Well, namespaces have been introduced in the meantime, and you have learned at the useR to call the generic silhouette() directly or to use cluster:::silhouette.default to get the code. Uwe Ligges Eryk Dipl. bio-chem. Eryk Witold Wolski@MPI-Moleculare Genetic Ihnestrasse 63-73 14195 Berlin 'v' tel: 0049-30-83875219 / \ mail: [EMAIL PROTECTED]---W-W http://www.molgen.mpg.de/~wolski __ [EMAIL PROTECTED] mailing list https://www.stat.math.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide! http://www.R-project.org/posting-guide.html __ [EMAIL PROTECTED] mailing list https://www.stat.math.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide! http://www.R-project.org/posting-guide.html Dipl. bio-chem. Eryk Witold Wolski@MPI-Moleculare Genetic Ihnestrasse 63-73 14195 Berlin 'v' tel: 0049-30-83875219 / \ mail: [EMAIL PROTECTED]---W-Whttp://www.molgen.mpg.de/~wolski __ [EMAIL PROTECTED] mailing list https://www.stat.math.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide! http://www.R-project.org/posting-guide.html
Re: [R] Object silhouette.default not found. But I knew that it is there.
Wolski wrote: Hi! Thanks! You right. Have not realised it. I do not wanted to call the function but I wanted to see the function definition. Its a great feature of R to be able to do it. I knew I cant do it because the function object is not in the namespace. Ive been confronted with the reverse side of namespaces. On the other hand: ?silhouette.default works. It would be nice to have a way to display to source without going into the library directory. I just told you (and Fritz did so last week in his keynote lecture) to specify the namespace explicitly using the ::: operator as in: cluster:::silhouette.default and you will see the source, so what's the point? Uwe Sincerely Eryk PS. *** REPLY SEPARATOR *** On 5/25/2004 at 6:17 PM Uwe Ligges wrote: Wolski wrote: Hi! library(cluster) In this lib a function called silhoutte.default is defined than on the R prompt it type silhouette.default Error: Object silhouette.default not found R1.9.0 The same error are at R1.8.1 And I knew that a function silhoutte.default are present. But the same piece of code works in R1.6.2 ??? Well, namespaces have been introduced in the meantime, and you have learned at the useR to call the generic silhouette() directly or to use cluster:::silhouette.default to get the code. Uwe Ligges Eryk Dipl. bio-chem. Eryk Witold Wolski@MPI-Moleculare Genetic Ihnestrasse 63-73 14195 Berlin 'v' tel: 0049-30-83875219 / \ mail: [EMAIL PROTECTED]---W-W http://www.molgen.mpg.de/~wolski __ [EMAIL PROTECTED] mailing list https://www.stat.math.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide! http://www.R-project.org/posting-guide.html __ [EMAIL PROTECTED] mailing list https://www.stat.math.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide! http://www.R-project.org/posting-guide.html Dipl. bio-chem. Eryk Witold Wolski@MPI-Moleculare Genetic Ihnestrasse 63-73 14195 Berlin 'v' tel: 0049-30-83875219 / \ mail: [EMAIL PROTECTED]---W-Whttp://www.molgen.mpg.de/~wolski __ [EMAIL PROTECTED] mailing list https://www.stat.math.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide! http://www.R-project.org/posting-guide.html __ [EMAIL PROTECTED] mailing list https://www.stat.math.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide! http://www.R-project.org/posting-guide.html
Re: [R] Object silhouette.default not found... there.
Eryk == Eryk Wolski [EMAIL PROTECTED]
on Tue, 25 May 2004 17:38:10 +0200 writes:
Eryk Hi!
library(cluster)
Eryk In this lib a function called silhoutte.default is defined
Eryk than on the R prompt it type
silhouette.default
Eryk Error: Object silhouette.default not found
Eryk R1.9.0
Eryk The same error are at R1.8.1
Eryk And I knew that a function silhoutte.default are present.
Hi Eryk,
please do learn about namespaces; many good R packages (incl.
all standard and recommended packages) nowadays make use of
namespaces, and we expect even more in the future.
One big advantage of 'namespacing a package' is that
you can make sure that your functions call your other functions
even if they have the same name as someone's functions in
another package. Another big pro is that you can use as many
``package-internal'' objects {helper-functions in my useR talk}
as you want: They won't be visible to the user and not clutter
the global namespace.
One side effect of namespaces: We usually do not export (S3)
methods such as silhouette.default() :
A user should call silhouette(...) and the method dispatching
chooses the corresponding method.
Now, to see hidden objects, you can
1) use getAnywhere() { getAnywhere(silhouette.default) }
2) use namespace:::object { cluster:::silhouette.default }
and for S3 methods,
3) getS3method(generic, class)
i.e., in this case getS3method(silhouette, default)
--
BUT: You won't see the source code of silhouette.default !
Instead:
1) Learn how to get and unpack the package source and then
seecluster/R/silhouette.R
2) if 1) is too difficult,
open the filename you get from
system.file(../cluster/R/cluster)
in a text editor -- preferably an R-aware one ...
which gives you a large file with all R source from the
cluster package. Now look for what you want.
Regards,
Martin Maechler [EMAIL PROTECTED] http://stat.ethz.ch/~maechler/
Seminar fuer Statistik, ETH-Zentrum LEO C16Leonhardstr. 27
ETH (Federal Inst. Technology) 8092 Zurich SWITZERLAND
phone: x-41-1-632-3408 fax: ...-1228
__
[EMAIL PROTECTED] mailing list
https://www.stat.math.ethz.ch/mailman/listinfo/r-help
PLEASE do read the posting guide! http://www.R-project.org/posting-guide.html
[R] debian packages and html help on linux
I have a fresh installation of R from debian unstable packages. The html index found in /usr/lib/R/doc/html/index.html works in Mozilla and under the link of 'packages' on this page I have a list and corresponding links. However, it appears that not all packages I have installed from available deb files via apt-get, will get their link updated to this package index. Specifically, from packages r-cran-boot, r-cran-car, r-cran-coda, r-cran-design, r-cran-effects, r-cran-foreign, r-cran-gregmisc, r-cran-hmisc, r-cran-its, r-cran-lattice, r-cran-lmtest, r-cran-mcmcpack, r-cran-mgcv, r-cran-multcomp, r-cran-relimp, r-cran-rgl, r-cran-rpart, r-cran-sm, r-cran-tseries, r-cran-vr, r-omegahat-ggobi, r-cran-kernsmooth none appeared to html package index. This also means that html search doesn't find functions within these packages although it otherwise works perfectly with my Mozilla. What shall I do to get also these package to the package index? Regards, Kari Ruohonen __ [EMAIL PROTECTED] mailing list https://www.stat.math.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide! http://www.R-project.org/posting-guide.html
Re: [R] Object silhouette.default not found... there.
Hallo!
Thanks too James Holtman, Douglas Grove, Uwe Ligges, Martin Maechler, for helpfull
answers
to my questions.
Sincerely
Eryk
*** REPLY SEPARATOR ***
On 5/25/2004 at 6:39 PM Martin Maechler wrote:
Eryk == Eryk Wolski [EMAIL PROTECTED]
on Tue, 25 May 2004 17:38:10 +0200 writes:
Eryk Hi!
library(cluster)
Eryk In this lib a function called silhoutte.default is defined
Eryk than on the R prompt it type
silhouette.default
Eryk Error: Object silhouette.default not found
Eryk R1.9.0
Eryk The same error are at R1.8.1
Eryk And I knew that a function silhoutte.default are present.
Hi Eryk,
please do learn about namespaces; many good R packages (incl.
all standard and recommended packages) nowadays make use of
namespaces, and we expect even more in the future.
One big advantage of 'namespacing a package' is that
you can make sure that your functions call your other functions
even if they have the same name as someone's functions in
another package. Another big pro is that you can use as many
``package-internal'' objects {helper-functions in my useR talk}
as you want: They won't be visible to the user and not clutter
the global namespace.
One side effect of namespaces: We usually do not export (S3)
methods such as silhouette.default() :
A user should call silhouette(...) and the method dispatching
chooses the corresponding method.
Now, to see hidden objects, you can
1) use getAnywhere() { getAnywhere(silhouette.default) }
2) use namespace:::object { cluster:::silhouette.default }
and for S3 methods,
3) getS3method(generic, class)
i.e., in this case getS3method(silhouette, default)
--
BUT: You won't see the source code of silhouette.default !
Instead:
1) Learn how to get and unpack the package source and then
seecluster/R/silhouette.R
2) if 1) is too difficult,
open the filename you get from
system.file(../cluster/R/cluster)
in a text editor -- preferably an R-aware one ...
which gives you a large file with all R source from the
cluster package. Now look for what you want.
Regards,
Martin Maechler [EMAIL PROTECTED]http://stat.ethz.ch/~maechler/
Seminar fuer Statistik, ETH-Zentrum LEO C16 Leonhardstr. 27
ETH (Federal Inst. Technology) 8092 Zurich SWITZERLAND
phone: x-41-1-632-3408 fax: ...-1228
Dipl. bio-chem. Eryk Witold Wolski@MPI-Moleculare Genetic
Ihnestrasse 63-73 14195 Berlin 'v'
tel: 0049-30-83875219 / \
mail: [EMAIL PROTECTED]---W-Whttp://www.molgen.mpg.de/~wolski
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Re: [R] Object silhouette.default not found... there.
On Tue, May 25, 2004 at 06:39:13PM +0200, Martin Maechler wrote: please do learn about namespaces; many good R packages (incl. all standard and recommended packages) nowadays make use of namespaces, and we expect even more in the future. I also want to learn about namespaces. I have looked at ?:::, but I think that a tutorial-like document would help me apply and understand namespaces better. So where should I look for a gentle introduction to namespaces, with examples, if there is such a thing? Tamas -- Tamás K. Papp E-mail: [EMAIL PROTECTED] Please try to send only (latin-2) plain text, not HTML or other garbage. __ [EMAIL PROTECTED] mailing list https://www.stat.math.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide! http://www.R-project.org/posting-guide.html
Re: [R] debian packages and html help on linux
On Tue, 25 May 2004, Kari Ruohonen wrote: I have a fresh installation of R from debian unstable packages. The html index found in /usr/lib/R/doc/html/index.html works in Mozilla and under the link of 'packages' on this page I have a list and corresponding links. However, it appears that not all packages I have installed from available deb files via apt-get, will get their link updated to this package index. Specifically, from packages r-cran-boot, r-cran-car, r-cran-coda, r-cran-design, r-cran-effects, r-cran-foreign, r-cran-gregmisc, r-cran-hmisc, r-cran-its, r-cran-lattice, r-cran-lmtest, r-cran-mcmcpack, r-cran-mgcv, r-cran-multcomp, r-cran-relimp, r-cran-rgl, r-cran-rpart, r-cran-sm, r-cran-tseries, r-cran-vr, r-omegahat-ggobi, r-cran-kernsmooth none appeared to html package index. This also means that html search doesn't find functions within these packages although it otherwise works perfectly with my Mozilla. What shall I do to get also these package to the package index? Use the correct index: see ?help.start. Installing a package does not update /usr/lib/R/doc/html/packages.html, but help.start() creates a current index dynamically. If you really want to do this without running R, use R CMD perl /usr/lib/R/share/perl/build-help.pl --htmllists to update the static index. From inside R you can run make.packages.html(). In both cases, you need write permission in /usr/lib/R/doc/html. -- Brian D. Ripley, [EMAIL PROTECTED] Professor of Applied Statistics, http://www.stats.ox.ac.uk/~ripley/ University of Oxford, Tel: +44 1865 272861 (self) 1 South Parks Road, +44 1865 272866 (PA) Oxford OX1 3TG, UKFax: +44 1865 272595 __ [EMAIL PROTECTED] mailing list https://www.stat.math.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide! http://www.R-project.org/posting-guide.html
[R] accessing function arguments as text, macro style
Hi. In a case like this, I can get strip headings that have the name
c and the value for c.
d - data.frame(a=1:5,b=6:10,c=11:15)
xyplot(a ~ b | paste(c, c), data=d)
For more complicated examples, instead of using paste repeatedly I
would like to use a function. It seems like what I really want is a
macro, though. I'm not quite familiar enough with R's treatment of
function parameters to know how to do something like this (ficticious
example):
f - function(x) { paste(identifier(x), value(x)) }
rambo - brave
f(rambo)
rambo brave
I've checked ?function, ?args, ?eval, and some others, but I think
I'm barking up the wrong tree. Any pointers would be most
appreciated.
--
--Ed L Cashin| PGP public key:
[EMAIL PROTECTED]| http://noserose.net/e/pgp/
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Re: [R] accessing function arguments as text, macro style
Ed L Cashin ecashin at uga.edu writes:
function parameters to know how to do something like this (ficticious
example):
f - function(x) { paste(identifier(x), value(x)) }
rambo - brave
f(rambo)
rambo brave
R f - function(x) paste(as.character(substitute(x)),x)
R z - 3
R f(z)
[1] z 3
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Re: [R] accessing function arguments as text, macro style
Gabor Grothendieck [EMAIL PROTECTED] writes: ... R f - function(x) paste(as.character(substitute(x)),x) R z - 3 R f(z) [1] z 3 Fantastic. Works like a charm. -- --Ed L Cashin| PGP public key: [EMAIL PROTECTED]| http://noserose.net/e/pgp/ __ [EMAIL PROTECTED] mailing list https://www.stat.math.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide! http://www.R-project.org/posting-guide.html
Re: [R] debian packages and html help on linux
On Tue, 25 May 2004, Dirk Eddelbuettel wrote: On Tue, May 25, 2004 at 06:14:42PM +0100, Prof Brian Ripley wrote: On Tue, 25 May 2004, Kari Ruohonen wrote: I have a fresh installation of R from debian unstable packages. The html index found in /usr/lib/R/doc/html/index.html works in Mozilla and under the link of 'packages' on this page I have a list and corresponding links. However, it appears that not all packages I have installed from available deb files via apt-get, will get their link updated to this package index. Specifically, from packages r-cran-boot, r-cran-car, r-cran-coda, r-cran-design, r-cran-effects, r-cran-foreign, r-cran-gregmisc, r-cran-hmisc, r-cran-its, r-cran-lattice, r-cran-lmtest, r-cran-mcmcpack, r-cran-mgcv, r-cran-multcomp, r-cran-relimp, r-cran-rgl, r-cran-rpart, r-cran-sm, r-cran-tseries, r-cran-vr, r-omegahat-ggobi, r-cran-kernsmooth none appeared to html package index. This also means that html search doesn't find functions within these packages although it otherwise works perfectly with my Mozilla. What shall I do to get also these package to the package index? Use the correct index: see ?help.start. Installing a package does not update /usr/lib/R/doc/html/packages.html, but help.start() creates a current index dynamically. If you really want to do this without running R, use R CMD perl /usr/lib/R/share/perl/build-help.pl --htmllists to update the static index. From inside R you can run make.packages.html(). In both cases, you need write permission in /usr/lib/R/doc/html. That sounds like something we could easily execute via the postinst script once the package as been unpacked. As that step runs as root, permissions would not be an issue. Might be a good idea. R (except on Windows/MacOSX) is not really set up for binary package installs, but on Windows install.packages() does the R-level equivalent (and I remembered wrongly: on Unix make.packages.html() works in tmpdir/.R). Would that step alleviate the need for the per-user ~/.R/ index ? Actually, it is per-session in a tempdir these days. Not really, as there can be several library trees in use. -- Brian D. Ripley, [EMAIL PROTECTED] Professor of Applied Statistics, http://www.stats.ox.ac.uk/~ripley/ University of Oxford, Tel: +44 1865 272861 (self) 1 South Parks Road, +44 1865 272866 (PA) Oxford OX1 3TG, UKFax: +44 1865 272595 __ [EMAIL PROTECTED] mailing list https://www.stat.math.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide! http://www.R-project.org/posting-guide.html
[R] Update of the R GUI projects web site
Hi all, GUIs for R is an active field of research, as illustrated by contributions in this topic at the recent UseR! conference. I have just updated http://www.r-project.org/GUI to reflect changes and new projects like JGR, wxPython, Rho and SciViews-R. Best, Philippe Grosjean ...°})) ) ) ) ) ) ( ( ( ( ( Prof. Philippe Grosjean \ ___ ) \/ECO\ ( Numerical Ecology of Aquatic Systems /\___/ ) Mons-Hainaut University, Pentagone / ___ /( 8, Av. du Champ de Mars, 7000 Mons, Belgium /NUM\/ ) \___/\ ( phone: + 32.65.37.34.97, fax: + 32.65.37.33.12 \ ) email: [EMAIL PROTECTED] ) ) ) ) ) SciViews project coordinator (http://www.sciviews.org) ( ( ( ( ( ... __ [EMAIL PROTECTED] mailing list https://www.stat.math.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide! http://www.R-project.org/posting-guide.html
RE: [R] thanks again
Chad, Do not forget that, due to the contaminant character of the GPL license, if you put a R logo on a t-shirt, you have to share and distribute it freely to the community,... and do not forget to distribute the source with it ;-) Best, Philippe Grosjean -Original Message- From: [EMAIL PROTECTED] [mailto:[EMAIL PROTECTED] Behalf Of Chad Shaw Sent: Tuesday, 25 May, 2004 19:52 To: [EMAIL PROTECTED] Subject: [R] thanks again Achim: Thanks again for the conference. We had good fun. I have 2 requests: 1) I'd like to email my R-foundation membership to you. I will scan the form and send just like I did for the meeting. 2) I want a useR t-shirt. After lots of drinking and discussion with Fritz Leisch at dinner on saturday, I feel there will be no chance for an official T-shirt. My question is: any advice/ thoughts on how there can be T-shirts for the conference? Chad __ [EMAIL PROTECTED] mailing list https://www.stat.math.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide! http://www.R-project.org/posting-guide.html __ [EMAIL PROTECTED] mailing list https://www.stat.math.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide! http://www.R-project.org/posting-guide.html
Re: [R] accessing function arguments as text, macro style
This solution may not quite work as you intend. I believe that the preferred solution is: f - function(x) paste(deparse(substitute(x)),x) This would give the same result with the z-3 example below, but try it for both versions with the call: f(sin(3)) The subtlety is that substitute returns the parse TREE of its (expression)argument, which you probably want deparsed rather than cast by as.character(). Cheers, Bert Ed L Cashin wrote: Gabor Grothendieck [EMAIL PROTECTED] writes: ... R f - function(x) paste(as.character(substitute(x)),x) R z - 3 R f(z) [1] z 3 Fantastic. Works like a charm. -- --Ed L Cashin| PGP public key: [EMAIL PROTECTED]| http://noserose.net/e/pgp/ __ [EMAIL PROTECTED] mailing list https://www.stat.math.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide! http://www.R-project.org/posting-guide.html -- Bert Gunter Non-Clinical Biostatistics Genentech MS: 240B Phone: 650-467-7374 The business of the statistician is to catalyze the scientific learning process. -- George E.P. Box __ [EMAIL PROTECTED] mailing list https://www.stat.math.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide! http://www.R-project.org/posting-guide.html
[R] (OT) Fourier coefficients.
This posting has nothing to do with R (except maybe that I am using R very heavily in writing the paper to which the question pertains.) I simply wish to draw upon the impressive knowledge and wisdom of the R community. Since this question is way off topic, if anybody has the urge to reply, they should probably email me directly: [EMAIL PROTECTED] rather than via this list. My question is essentially about Fourier coefficients: Suppose pi / 2*pi*a_k = | f(omega)*exp(-i*k*omega) d omega / -pi and pi / 2*pi*b_k = | G(omega)*f(omega)*exp(-i*k*omega) d omega / -pi (The ``*''-s just mean multiplication here, not convolution; i is of course sqrt(-1).) The function f() is positive and symmetric about 0 (it's actually a spectral density function) and G() is the gain of a nice (ARMA) filter | p(exp(i*omega) |^2 G(omega) = | -- | | q(exp(i*omega) | where p() and q() are polynomials (with real coefficients); q() has no zeroes inside the unit disk. Suppose that the a_k satisfy an asymptotic condition: a_k * ln k --- 0 as k --- infinity. (The ``Berman condition''.) Can I say that the b_k satisfy this condition? If not, where would I look for a counter-example? And could I add some extra not-too-stringent restrictions on the spectrum f() so that I ***could*** say that the b_k satisfy the Berman condition? Any hints gratefully received. cheers, Rolf Turner [EMAIL PROTECTED] __ [EMAIL PROTECTED] mailing list https://www.stat.math.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide! http://www.R-project.org/posting-guide.html
Re: [R] Object silhouette.default not found... there.
Tamas Papp wrote:
On Tue, May 25, 2004 at 06:39:13PM +0200, Martin Maechler wrote:
please do learn about namespaces; many good R packages (incl.
all standard and recommended packages) nowadays make use of
namespaces, and we expect even more in the future.
For example in R News:
@Article{Rnews:Tierney:2003,
author = {Luke Tierney},
title= {Name Space Management for {R}},
journal = {R News},
year = 2003,
volume = 3,
number = 1,
pages= {2--6},
month= {June},
url = {http://CRAN.R-project.org/doc/Rnews/}
}
and in Writing R Extensions.
Uwe Ligges
I also want to learn about namespaces. I have looked at ?:::, but I
think that a tutorial-like document would help me apply and understand
namespaces better. So where should I look for a gentle introduction
to namespaces, with examples, if there is such a thing?
Tamas
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[R] use of do.call and rep
If I use this: rep(1:2,c(5,5)) I'll get 1 1 1 1 1 2 2 2 2 2 Is there a way to do this more efficiently, please? Maybe via do.call? Thanks, Laura mailto: [EMAIL PROTECTED] _ http://toolbar.msn.click-url.com/go/onm00200415ave/direct/01/ __ [EMAIL PROTECTED] mailing list https://www.stat.math.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide! http://www.R-project.org/posting-guide.html
[R] this is no joke
Peter And don't forget to implement the impossible-to-take-it-off feature, so that we can use it for capture-recapture experiments to estimate the size of the R user base. The relevance of T-shirts to the R scientific enterprise is beyond refute. How can we compute those who compute without data? I think the R-core should move rapidly to fill this void. No more NULL values. Let's gather the data. Let's mark the useRs with a symbol. Not the scarlet A, but something soothing and COOL. useR cashaw __ [EMAIL PROTECTED] mailing list https://www.stat.math.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide! http://www.R-project.org/posting-guide.html
[R] Saving/exporting graphs
HI: I have tried to find a way in which to export/save graphs via the command line. I know i can right click on it and save it as wmf etc. But I was wandering if there is a function such as Splus' export.graph Thanks From Alberto Nettel's Desk University of Calgary Math Stats Department. Room 346, ext 7199 E-mail: [EMAIL PROTECTED] __ [EMAIL PROTECTED] mailing list https://www.stat.math.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide! http://www.R-project.org/posting-guide.html
Re: [R] Saving/exporting graphs
HI: I have tried to find a way in which to export/save graphs via the command line. I know i can right click on it and save it as wmf etc. But I was wandering if there is a function such as Splus' export.graph ?win.metafile as in win.metafile(c:/foo.wmf) plot(blah,blah,blah) dev.off() Cheers Jason __ [EMAIL PROTECTED] mailing list https://www.stat.math.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide! http://www.R-project.org/posting-guide.html
Re: [R] Saving/exporting graphs
Alberto Nettel Aguirre wrote: HI: I have tried to find a way in which to export/save graphs via the command line. I know i can right click on it and save it as wmf etc. But I was wandering if there is a function such as Splus' export.graph Thanks From Alberto Nettel's Desk University of Calgary Math Stats Department. Room 346, ext 7199 E-mail: [EMAIL PROTECTED] See ?Devices and in particular ?win.metafile. Also see ?savePlot. --sundar __ [EMAIL PROTECTED] mailing list https://www.stat.math.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide! http://www.R-project.org/posting-guide.html
[R] cor and missing values. Bug?
There seems to be an issue in computing rank correlations with missing values present. I think this comes from the way rank() function works but I am not sure how to go about this. Rank function places missing values at the end by default thus skewing the rank relationship between two vectors: Example: R : Copyright 2003, The R Foundation for Statistical Computing Version 1.8.1 (2003-11-21), ISBN 3-900051-00-3 vec1 - 1:10 vec2 - 2*vec1 vec1[c(1, 5)] - NA cor(vec1, vec2, use=pair, method=pearson) [1] 1 cor(vec1[-c(1,5)], vec2[-c(1,5)], use=pair, method=pearson) [1] 1 #pearson is OK cor(vec1, vec2, use=pair, method=spearman) [1] 0.3212121 cor(vec1[-c(1,5)], vec2[-c(1,5)], use=pair, method=spearman) [1] 1 cor(vec1, vec2, use=complete, method=spearman) [1] 0.3212121 #BUG? Interestingly, complete option which should exclude missing values entirely does not fix an issue either. I think that rank function must be applied before use is used (actually it is the case looking at the actual code of cor). I looked though the archives but have not seen this reported. Is it a bug of rank-correlations or am I misinterpreting the intention? Thank you Jane Jane Fridlyand, Assistant Professor Department of Epidemiology and Biostatistics Center for Bioinformatics and Molecular Biostatistics UCSF Comprehensive Cancer Center, Box 0128 San Francisco, CA 94143-0128 Office: Room N224 Tel: (415)476-0168 Fax: (415)502-3179 __ [EMAIL PROTECTED] mailing list https://www.stat.math.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide! http://www.R-project.org/posting-guide.html
Re: [R] cor and missing values. Bug?
Jane Fridlyand [EMAIL PROTECTED] writes: There seems to be an issue in computing rank correlations with missing values present. I think this comes from the way rank() function works but I am not sure how to go about this. Rank function places missing values at the end by default thus skewing the rank relationship between two vectors: Example: R : Copyright 2003, The R Foundation for Statistical Computing Version 1.8.1 (2003-11-21), ISBN 3-900051-00-3 Not to put too fine a point on it, but did you consider checking the NEWS file for the most recent version (1.9.0, http://cran.r-project.org/src/base/NEWS)? o The cor() function did not remove missing values in the non-Pearson case. -- O__ Peter Dalgaard Blegdamsvej 3 c/ /'_ --- Dept. of Biostatistics 2200 Cph. N (*) \(*) -- University of Copenhagen Denmark Ph: (+45) 35327918 ~~ - ([EMAIL PROTECTED]) FAX: (+45) 35327907 __ [EMAIL PROTECTED] mailing list https://www.stat.math.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide! http://www.R-project.org/posting-guide.html
[R] apology
I apologise, I asked about exporting graphs and said I could not find it. Well I did, saveplot. my apologies. From Alberto Nettel's Desk University of Calgary Math Stats Department. Room 346, ext 7199 E-mail: [EMAIL PROTECTED] __ [EMAIL PROTECTED] mailing list https://www.stat.math.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide! http://www.R-project.org/posting-guide.html
[R] Need help on Mclus output
Dear useRs, I have fitted a mixture with 4 normal components on a univariate distribution using the Mclust package. Now, I would like to get a variable with the cluster membership of each class, or in alternative a variable with the posterior probabilities for each component. Also I cannot find where are the paramenters estimates for each component ,i.e. means and variances. I've read the documentation available but it seems to me very difficult to obtain these outputs. Any hints? thanx a lot max /*** Max Marinucci PhD candidate Universidad Complutense Madrid [[alternative HTML version deleted]] __ [EMAIL PROTECTED] mailing list https://www.stat.math.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide! http://www.R-project.org/posting-guide.html
[R] Turning pass/fail results into a proportion
Please forgive me, I feel exceptionally like a newbie. Although I've read screeds of documentation, I just can't see how this is done. I have a data frame that contains a number of pass/fails for certain variable sizes. From that, I would like to form another data frame that contains the proportions of pass/fails per variable. So, for example: df - data.frame( Var=c(3,3,3,4,4), Result=c(pass,fail,fail,pass,pass), SampleSize=c(3,3,3,2,2)) And I'd like to produce the equivalent of: data.frame( Var=c(3,4), ProportionPass=c(0.33, 1) ) I have found the table() function: table( df$Var, df$Result) which potentially seems to be part of the solution, however it turns the Var column into factors. As an aside, is the storage of SampleSize (above) the best technique? Or is it better to store it in a data frame of its own: data.frame( Var=c(3,4), SamepleSize=c(3,2) ) and then utilise some sort of lookup function? Thank you for your thoughts, Matthew Walker __ [EMAIL PROTECTED] mailing list https://www.stat.math.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide! http://www.R-project.org/posting-guide.html
Re: [R] No direct or inherited method for function update
Try doing this without all those Bioconductor packages loaded. It does
work in base R, and I suspect that one of your packages has redefined
update (by adding S4 methods?). If you track down exactly which package
causes the problem, you can report it to the appropriate person.
On Tue, 25 May 2004, Dick Beyer wrote:
I used to be able to call update() for lme objects. Now I get this error:
ge.lme - update(ge.lme, data=dat)
Error in update(ge.lme, data = dat) : No direct or inherited method for function
update for this call
Here is the relevant portion of my code:
ge - eset[1,]
dat- data.frame(age, gen, fdr, ge)
ge.lme - lme(fixed=ge~age+gen+age*gen, data=dat, random=~ 1| fdr)
for (i in 1:nrow(eset)) {
dat$ge - c(eset[i,])
ge.lme - update(ge.lme, data=dat)
.
.
.
}
I am using:
base 1.9.0
utils 1.9.0
graphics 1.9.0
stats 1.9.0
methods 1.9.0
Biobase 1.4.14
affy 1.4.30
gcrma 1.1.0
annaffy 1.0.7
KEGG 1.4.0
GO 1.5.1
mgu74av2 1.4.0
nlme 3.1-48
xtable 1.2-1
Any help or suggestions would be most appreciated.
Thanks much,
Dick
***
Richard P. Beyer, Ph.D. University of Washington
Tel.:(206) 616 7378 Env. Occ. Health Sci. , Box 354695
Fax: (206) 685 4696 4225 Roosevelt Way NE, # 100
Seattle, WA 98105-6099
http://depts.washington.edu/ceeh/ServiceCores/FC5/FC5.html
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--
Brian D. Ripley, [EMAIL PROTECTED]
Professor of Applied Statistics, http://www.stats.ox.ac.uk/~ripley/
University of Oxford, Tel: +44 1865 272861 (self)
1 South Parks Road, +44 1865 272866 (PA)
Oxford OX1 3TG, UKFax: +44 1865 272595
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[R] SJava
Hi again! I'm trying to download SJava from the http://www.omegahat.org/RSJava/ website. I'm trying to get the binary. I download the version from BDR's website. When I unzip the file via unzip.exe, the new folder appears as SJAVA (upper case). library(SJava) Error in library(SJava) : There is no package called 'SJava' library(SJAVA) Error in library(SJAVA) : There is no package called 'SJAVA' Any suggestions, please? TIA Laura mailto: [EMAIL PROTECTED] _ Best Restaurant Giveaway Ever! Vote for your favorites for a chance to win $1 million! http://local.msn.com/special/giveaway.asp __ [EMAIL PROTECTED] mailing list https://www.stat.math.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide! http://www.R-project.org/posting-guide.html
Re: [R] apology
I think it is savePlot You seemed to be talking about R on Windows without mentioning it, and savePlot is only on Windows. There are lots of other possibilities, e.g. dev.copy, on all R platforms. On Tue, 25 May 2004, Alberto Nettel Aguirre wrote: I apologise, I asked about exporting graphs and said I could not find it. Well I did, saveplot. my apologies. From Alberto Nettel's Desk [We prefer people's minds to be involved.] University of Calgary Math Stats Department. Room 346, ext 7199 E-mail: [EMAIL PROTECTED] -- Brian D. Ripley, [EMAIL PROTECTED] Professor of Applied Statistics, http://www.stats.ox.ac.uk/~ripley/ University of Oxford, Tel: +44 1865 272861 (self) 1 South Parks Road, +44 1865 272866 (PA) Oxford OX1 3TG, UKFax: +44 1865 272595 __ [EMAIL PROTECTED] mailing list https://www.stat.math.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide! http://www.R-project.org/posting-guide.html
Re: [R] SJava
In a message dated 5/25/2004 10:20:10 PM Pacific Daylight Time, [EMAIL PROTECTED] writes: Hi again! I'm trying to download SJava from the http://www.omegahat.org/RSJava/ website. I'm trying to get the binary. I download the version from BDR's website. When I unzip the file via unzip.exe, the new folder appears as SJAVA (upper case). library(SJava) Error in library(SJava) : There is no package called 'SJava' library(SJAVA) Error in library(SJAVA) : There is no package called 'SJAVA' Any suggestions, please? TIA Laura mailto: [EMAIL PROTECTED] (mailto:[EMAIL PROTECTED]) -Reply--- Laura, If you are using an MS Windows platform I suspect you don't want to manually unzip the file; it needs to be installed. Rather, start Rgui, and from the Packages menu select Install package(s) from local zip file... and follow the directions. Dan Nordlund __ [EMAIL PROTECTED] mailing list https://www.stat.math.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide! http://www.R-project.org/posting-guide.html
