AJ,
Can you test and let us know if this is OK
Ricky
__
Principal Analyst
Information Services
Queen's University Belfast
tel: 02890 974824
fax: 02890 976586
email: [EMAIL PROTECTED]
-Original Message-
From: [EMAIL PROTECTED] [mailto:[EMAIL PROTECTED]
Sent: 21 May 2007 12:41
To: Peter Dalgaard
Cc: [EMAIL PROTECTED]; Dr. A. J. McKnight; r-help@stat.math.ethz.ch; Ricky
Rankin
Subject: Re: [R] FW: R
Hi All
I think I've now got this working on XC cluster. Latest version 2.5.0.
Just type R.
man R for man pages.
Cheers
Derek
On Dec 11 2006, Peter Dalgaard wrote:
[EMAIL PROTECTED] wrote:
Hi Ricky / AJ
Progress of sorts. I got passed the last problem by looking at the
makefiles but run in to the next one, see below.
It has created files in /contrib/R-2.4.0. there is an R under
/contrib/R-2.4.0/bin/R.
Running it gives :-
/contrib/R-2.4.0/bin/R
R version 2.4.0 (2006-10-03)
Copyright (C) 2006 The R Foundation for Statistical Computing
ISBN 3-900051-07-0
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
*** caught segfault ***
address 40b843f0, cause 'memory not mapped'
Traceback:
1: .Call(La_dgesv, a, b, tol, PACKAGE = base)
2: solve.default(rgb)
3: solve(rgb)
4: drop(whitexyz %*% solve(rgb))
5: make.rgb(red = c(0.625, 0.34), green = c(0.28, 0.595), blue =
c(0.155, 0.07), gamma = 1.8, white = D65, name = Apple RGB)
6: eval(expr, envir, enclos)
7: eval(i, envir)
8: sys.source(codeFile, env, keep.source = keep.source)
9: try(sys.source(codeFile, env, keep.source = keep.source)) 10:
loadNamespace(package, c(which.lib.loc, lib.loc), keep.source =
keep.source) 11: try({ ns - loadNamespace(package, c(which.lib.loc,
lib.loc), keep.source = keep.source) dataPath -
file.path(which.lib.loc, package, data) env - attachNamespace(ns,
pos = pos, dataPath = dataPath)}) 12: library(package, lib.loc =
lib.loc, character.only = TRUE, logical = TRUE, warn.conflicts =
warn.conflicts, keep.source = keep.source, version = version) 13:
require(pkg, quietly = TRUE, warn.conflicts = FALSE, character.only =
TRUE, save = FALSE) 14: .First.sys()
Possible actions:
1: abort (with core dump)
2: normal R exit
3: exit R without saving workspace
4: exit R saving workspace
Selection: 14
aborting ...
Segmentation fault (core dumped)
The make command fails with :-
make[4]: Leaving directory `/contrib/R-2.4.0/src/library/grDevices/src'
*** caught segfault ***
address 4084b2f0, cause 'memory not mapped'
Traceback:
1: .Call(La_dgesv, a, b, tol, PACKAGE = base)
2: solve.default(rgb)
3: solve(rgb)
4: drop(whitexyz %*% solve(rgb))
5: make.rgb(red = c(0.625, 0.34), green = c(0.28, 0.595), blue =
c(0.155, 0.07), gamma = 1.8, white = D65, name = Apple RGB)
6: eval(expr, envir, enclos)
7: eval(i, envir)
8: sys.source(codeFile, env, keep.source = keep.source)
9: try(sys.source(codeFile, env, keep.source = keep.source)) 10:
loadNamespace(package, lib.loc, keep.source, TRUE, TRUE) 11:
code2LazyLoadDB(package, lib.loc = lib.loc, keep.source = keep.source,
compress = compress) 12: tools:::makeLazyLoading(grDevices) aborting
... /bin/sh: 18508 Memory fault(coredump) make[3]: *** [all] Error 139
make[3]: Leaving directory `/contrib/R-2.4.0/src/library/grDevices'
make[2]: *** [R] Error 1 make[2]: Leaving directory
`/contrib/R-2.4.0/src/library' make[1]: *** [R] Error 1 make[1]:
Leaving directory `/contrib/R-2.4.0/src' make: *** [R] Error 1
Do not hold out much hope from mailing list, as they did not answer my
last email, but have included it anyway.
They might not have had enough information to go on (and r-devel had
been a better target). Things like OS and computer versions. (I can't
seem to find the earlier report though).
Looks like you have broken lapack libraries, so you may want to upgrade
them or override the selection made during the configure phase.
Make sure to read
http://cran.r-project.org/doc/manuals/R-admin.html
and in particular Appendix A3 which discusses some of these issues.
Cheers
Derek
Derek McPhee
Information Services
Queen's University Belfast
e-mail [EMAIL PROTECTED]
Tel 028 90973840
Fax 028 90975066
__
R-help@stat.math.ethz.ch mailing list
https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting
guide http
