[sage-devel] Re: SAGE-2.5 alpha 2
Martin Albrecht [EMAIL PROTECTED] writes: On Thursday 03 May 2007 18:33, Joel B. Mohler wrote: Alpha 2 builds fine on x86 Gentoo, but it has a whole bunch of make test errors. The entire list of files is below. The ones I reran and looked at individually all seem to be related to singular. I know basically nothing about interacting with singular aside from through sage so I don't really know how to debug any further than a cursory inspection. As I changed the way SINGULAR is built for 2.5 it is quite likely that this is the problem. Unfortunately I will not find the time to look into this until around Monday as I am at a conference right now. Oh, if you are Justin Walker and you are willing to look into the PPC OSX problem, it would probably be sufficient if you could just point out how to call libtool properly on that platform. Or, if you want to dig deeper: In the Singular subdirectory of the singular spkg in the Makefile.in there is a section between Handle libSINGULAR stuff and End libSINGULAR which should be sufficient for a fix. More specifically, this seems to be wrong: ifeq ($(SINGUNAME),ppcMac-darwin) SO_SUFFIX= dylib LIBSINGULAR_FLAGS = -singule_module LIBSINGULAR_LD = $(LD) endif This is a just a typo -- try -single_module instead of -singule_module. On my system, I also needed to `export MACOSX_DEPLOYMENT_TARGET=10.4' in bash, or you can set it in the Makefile, I assume. After doing this, I get (sorry for the color garbage): ~/sage $ ./sage -- | SAGE Version 2.5.alpha2, Release Date: 2007-05-02 | | Type notebook() for the GUI, and license() for information.| -- --- type 'exceptions.ImportError' Traceback (most recent call last) /Users/nalexand/sage-2.5.alpha2/local/bin/string in module() /Users/nalexand/sage/local/lib/python2.5/site-packages/sage/misc/preparser_ipython.py in module() 6 [1;31m### [0m [1;33m [0m [0m 7 [1;33m [0m [0m 8 [1;32mimport [0m [1;37msage [0m [1;33m. [0m [1;37mmisc [0m [1;33m. [0m [1;37minterpreter [0m [1;33m [0m [0m 9 [1;33m [0m [0m 10 [1;32mimport [0m [1;37mpreparser [0m [1;33m [0m [0m /Users/nalexand/sage/local/lib/python2.5/site-packages/sage/misc/interpreter.py in module() 102 [1;33m [0m [0m 103 [1;32mimport [0m [1;37mos [0m [1;33m [0m [0m -- 104 [1;32mimport [0m [1;37mlog [0m [1;33m [0m [0m 105 [1;33m [0m [0m 106 [1;32mfrom [0m [1;37mIPython [0m [1;33m. [0m [1;37miplib [0m [1;32mimport [0m [1;37mInteractiveShell [0m [1;33m [0m [0m /Users/nalexand/sage/local/lib/python2.5/site-packages/sage/misc/log.py in module() 51 [1;33m [0m [0m 52 [1;32mimport [0m [1;37minterpreter [0m [1;33m [0m [0m --- 53 [1;32mimport [0m [1;37mlatex [0m [1;33m [0m [0m 54 [1;32mimport [0m [1;37mmisc [0m [1;33m [0m [0m 55 [1;33m [0m [0m /Users/nalexand/sage/local/lib/python2.5/site-packages/sage/misc/latex.py in module() 41 [1;32mimport [0m [1;37mrandom [0m [1;33m [0m [0m 42 [1;33m [0m [0m --- 43 [1;32mimport [0m [1;37msage [0m [1;33m. [0m [1;37mplot [0m [1;33m. [0m [1;37mall [0m [1;33m [0m [0m 44 [1;33m [0m [0m 45 [1;32mfrom [0m [1;37mmisc [0m [1;32mimport [0m [1;37mtmp_dir [0m [1;33m [0m [0m /Users/nalexand/sage/local/lib/python2.5/site-packages/sage/plot/all.py in module() 2[1;37mtext [0m [1;33m, [0m [1;37mcircle [0m [1;33m, [0m [1;37mdisk [0m [1;33m, [0m [1;37mhue [0m [1;33m, [0m [1;37mgraphics_array [0m [1;33m, [0m [1;33m [0m [0m 3[1;37mlist_plot [0m [1;33m, [0m [1;37mnetworkx_plot [0m [1;33m, [0m [1;37mparametric_plot [0m [1;33m, [0m [1;33m [0m [0m 4[1;37mpolar_plot [0m [1;33m, [0m [1;37mcontour_plot [0m [1;33m, [0m [1;37marrow [0m [1;33m, [0m [1;33m [0m [0m 5[1;37mplot_vector_field [0m [1;33m, [0m [1;37mmatrix_plot [0m [1;33m, [0m [1;37mbar_chart [0m [1;33m, [0m [1;33m [0m [0m 6 is_Graphics) /Users/nalexand/sage/local/lib/python2.5/site-packages/sage/plot/plot.py in module() 130 [1;32mimport [0m [1;37mpdb [0m [1;33m [0m [0m 131 [1;33m [0m [0m -- 132 [1;32mfrom [0m [1;37msage [0m [1;33m. [0m [1;37mstructure [0m [1;33m. [0m [1;37msage_object [0m [1;32mimport [0m [1;37mSageObject [0m [1;33m [0m [0m 133 [1;33m [0m [0m 134 [1;31m## IMPORTANT: Do not import matplotlib at module scope. It takes a [0m [1;33m [0m [0m /Users/nalexand/sage-2.5.alpha2/local/bin/sage_object.pyx in sage_object() type 'exceptions.ImportError': No module named bz2 WARNING: Failure executing code: 'import sage.misc.preparser_ipython;
[sage-devel] Re: SAGE-2.5 alpha 2
ifeq ($(SINGUNAME),ppcMac-darwin) SO_SUFFIX= dylib LIBSINGULAR_FLAGS = -singule_module LIBSINGULAR_LD = $(LD) endif It's often A Bad Idea to invoke 'ld' directly on Mac OS X: the rules are pretty snarky. Is this the way it comes from the factory? It is definitely my fault - if there is any. The SINGULAR people are not to blame for any build issues. But actually libtool is invoked, is that the way to go? Martin -- name: Martin Albrecht _pgp: http://pgp.mit.edu:11371/pks/lookup?op=getsearch=0x8EF0DC99 _www: http://www.informatik.uni-bremen.de/~malb _jab: [EMAIL PROTECTED] --~--~-~--~~~---~--~~ To post to this group, send email to sage-devel@googlegroups.com To unsubscribe from this group, send email to [EMAIL PROTECTED] For more options, visit this group at http://groups.google.com/group/sage-devel URLs: http://sage.scipy.org/sage/ and http://modular.math.washington.edu/sage/ -~--~~~~--~~--~--~---
[sage-devel] Re: SAGE-2.5 alpha 2
William Stein wrote: Hi, I've posted sage-2.5 alpha 2 at Did I miss alpha 1 or did you not announce it publically? I haven't tried building on cygwin yet. Feedback welcome. I am currently building on cygwin. It is still building, but I need the following two patches: http://fsmath.mathematik.uni-dortmund.de/~mabshoff/patches/sage-2.5.0-alpha2-fix-gdmodule-on-cygwin.patch This one fixes the detection code in spkg-install for cygwin and also adds fontconfig to the lists of libraries for cygwin. http://fsmath.mathematik.uni-dortmund.de/~mabshoff/patches/sage-2.5.0-alpha2-fix-sqlite-on-cygwin.patch Uncomments two lines in Makefile.in - I didn't test that one on other platforms, but it should work. This way we avoid building sqlite3.c, which is only needed for tcl (which we disable anyway) I will update you once I am done with the tests or run into another problem that I cannot fix. Cheers, Michael --~--~-~--~~~---~--~~ To post to this group, send email to sage-devel@googlegroups.com To unsubscribe from this group, send email to [EMAIL PROTECTED] For more options, visit this group at http://groups.google.com/group/sage-devel URLs: http://sage.scipy.org/sage/ and http://modular.math.washington.edu/sage/ -~--~~~~--~~--~--~---
[sage-devel] Re: SAGE-2.5 alpha 2
Alpha 2 builds fine on x86 Gentoo, but it has a whole bunch of make test errors. The entire list of files is below. The ones I reran and looked at individually all seem to be related to singular. I know basically nothing about interacting with singular aside from through sage so I don't really know how to debug any further than a cursory inspection. -- Joel The following tests failed: sage -t devel/sage-main/sage/ext/interactive_constructors_c.pyx sage -t devel/sage-main/sage/interfaces/singular.py sage -t devel/sage-main/sage/interfaces/gap.py sage -t devel/sage-main/sage/libs/cf/cf.pyx sage -t devel/sage-main/sage/rings/homset.py sage -t devel/sage-main/sage/rings/quotient_ring.py sage -t devel/sage-main/sage/rings/quotient_ring_element.py sage -t devel/sage-main/sage/rings/multi_polynomial_ideal.py sage -t devel/sage-main/sage/rings/morphism.py sage -t devel/sage-main/sage/rings/polynomial_singular_interface.py sage -t devel/sage-main/sage/rings/power_series_ring_element.pyx sage -t devel/sage-main/sage/rings/multi_polynomial_libsingular.pyx sage -t devel/sage-main/sage/rings/groebner_fan.py sage -t devel/sage-main/sage/rings/ring.pyx sage -t devel/sage-main/sage/schemes/generic/algebraic_scheme.py sage -t devel/sage-main/sage/schemes/generic/affine_space.py sage -t devel/sage-main/sage/schemes/generic/morphism.py sage -t devel/sage-main/sage/schemes/generic/divisor.py sage -t devel/sage-main/sage/schemes/generic/projective_space.py sage -t devel/sage-main/sage/schemes/plane_curves/projective_curve.py sage -t devel/sage-main/sage/schemes/plane_curves/curve.py sage -t devel/sage-main/sage/schemes/plane_curves/affine_curve.py sage -t devel/sage-main/sage/schemes/plane_curves/constructor.py sage -t devel/sage-main/sage/structure/element.pyx sage -t devel/sage-main/sage/calculus/calculus.py sage -t devel/sage-main/sage/functions/functions.py sage -t devel/sage-main/sage/functions/constants.py Total time for all tests: 1431.5 seconds On Wed, May 02, 2007 at 08:19:15PM -0700, William Stein wrote: Hi, I've posted sage-2.5 alpha 2 at http://sage.math.washington.edu/home/was/sage2.5/ as http://sage.math.washington.edu/home/was/sage2.5/sage-2.5.alpha2.tar Please build it, and if that works do make test, and report what happens to sage-devel. Thanks! The plan is to release sage-2.5 on Friday night, if possible. The main thing to do before then is lots of build testing and doc testing. NOTE: I think it fails to build on PowerPC OSX -- if you have such a machine, please try to build and report back, and if you're Justin Walker try to fix the problem :-). I haven't tried building on cygwin yet. Feedback welcome. -- William Stein Associate Professor of Mathematics University of Washington http://www.williamstein.org --~--~-~--~~~---~--~~ To post to this group, send email to sage-devel@googlegroups.com To unsubscribe from this group, send email to [EMAIL PROTECTED] For more options, visit this group at http://groups.google.com/group/sage-devel URLs: http://sage.scipy.org/sage/ and http://modular.math.washington.edu/sage/ -~--~~~~--~~--~--~---
[sage-devel] Re: SAGE-2.5 alpha 2
On Thu, May 03, 2007 at 11:33:03AM -0400, Joel B. Mohler wrote: Alpha 2 builds fine on x86 Gentoo, but it has a whole bunch of make test errors. The entire list of files is below. The ones I reran and looked at individually all seem to be related to singular. I know basically nothing about interacting with singular aside from through sage so I don't really know how to debug any further than a cursory inspection. To reply to myself, I just tried to run 'singular' from the bash prompt, and it just sits. I get no singular prompt (as I might expect). Ctrl+C gets me a bash prompt again, but I get no output from singular whatsoever. Like I said, I'm clueless about singular so if someone wants to wants to clue me in about something else to check, I'm willing. -- Joel --~--~-~--~~~---~--~~ To post to this group, send email to sage-devel@googlegroups.com To unsubscribe from this group, send email to [EMAIL PROTECTED] For more options, visit this group at http://groups.google.com/group/sage-devel URLs: http://sage.scipy.org/sage/ and http://modular.math.washington.edu/sage/ -~--~~~~--~~--~--~---
[sage-devel] Re: SAGE-2.5 alpha 2
On Thursday 03 May 2007 12:57, Martin Albrecht wrote:
Got it. I kind of messed up in the Makefile.in such that LIB doesn't link
to lib but to
LIB -
/tmp/sage-2.5.alpha2/spkg/build/singular-3-0-2-20070424/Singular/LIB
. Also, the *.lib scripts didn't get installed.
Maybe replacing install-nolns in the Makefile.in by:
installslib-nolns: LIB
test -d ${slibdir} || ${INSTALL} -d `pwd`/LIB ${slibdir}
${INSTALL} `pwd`/LIB/*.lib ${slibdir}
${MKINSTALLDIRS} ${slibdir}/gftables
${INSTALL} `pwd`/LIB/gftables/* ${slibdir}/gftables/
I'm not sure if I'm being thickheaded, but these directions didn't work for me
and I was sufficiently confused about them that I couldn't debug them.
Here's what I did:
1) REMOVED my install-nolns and replaced withthe installslib-nolns as above
2) Rebuilt by running ./spkg-install in the singular build directory
3) Received a make error about not having install-nolns
4) I changed the spkg-install to reference the new installslib-nolns
5) Got an error about not knowing how to make target LIB
6) I wasn't sure if I should be making LIB manually or what
Maybe you have this all figured out and don't need me to debug (i.e. -- I'll
happily be patient until a fixed alpha/beta comes out). Let me know if there
is something else I should be trying.
--
Joel
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