Re: [spctools-discuss] ProtyQuant for comparing TPP samples (.pepXML)

['Luis Mendoza' via spctools-discuss]

This looks great!  Thank you. Robert!

--Luis


On Fri, Sep 25, 2020 at 1:34 PM Robert 
wrote:

> Hi, I just published a software for  post-processing TPP .pepXML files
> (validated by PeptideProphet). The GUI software has the following functions:
>
> - Calculation of protein inference/ probability
> - Quantification; kind of spectral counting, but using peptide
> probabilities
> - Compilation of tables in simple CSV format, for direct comparison of
> protein presence/ quantity in the different samples.
>
> Most functions are implemented in the graphical user interface (Windows
> installer, Python, Docker.) For the experts, the code repository (
> https://bitbucket.org/lababi/protyquant/) also contains some scripts ;-).
>
> "ProtyQuant: Comparing label-free shotgun proteomics datasets using
> accumulated peptide probabilities"
>
> https://doi.org/10.1016/j.jprot.2020.103985
>
> Have fun, Robert
>
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> 
> .
>

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[spctools-discuss] ProtyQuant for comparing TPP samples (.pepXML)

[Robert]

Hi, I just published a software for  post-processing TPP .pepXML files 
(validated by PeptideProphet). The GUI software has the following functions:

- Calculation of protein inference/ probability
- Quantification; kind of spectral counting, but using peptide probabilities
- Compilation of tables in simple CSV format, for direct comparison of 
protein presence/ quantity in the different samples.

Most functions are implemented in the graphical user interface (Windows 
installer, Python, Docker.) For the experts, the code repository 
(https://bitbucket.org/lababi/protyquant/) also contains some scripts ;-).

"ProtyQuant: Comparing label-free shotgun proteomics datasets using 
accumulated peptide probabilities"

https://doi.org/10.1016/j.jprot.2020.103985

Have fun, Robert

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