Re: [spctools-discuss] Query related to filtering PTMprophet results in TPP

['David Shteynberg' via spctools-discuss]

Your current version of the TPP doesn't have this feature.   You will have
to upgrade to a more recent release.   Try 5.2.0 and let us know if that
works.

David

On Mon, Jan 27, 2020, 9:49 AM Mehar Un Nissa 
wrote:

> Hello Sir/Madam,
> We used TPP and PTMprophet for PTM analysis.
> PTM  taken (Phosphorylation- STY)
>
> After comet followed by PTM prophet analysis this is how pepxml view is:
> We are getting columns of probability and some other columns.
> [image: C1.PNG]
> PROBLEM: In the filtering options we are not getting option of *peptideprophet
> probability and PTMprophet probabilities (although iprophet probability
> option is coming). *
> [image: C2.PNG]
>
> Could you please help me solve this.
>
>
> Looking forward to hearing from you
> Thanks and regards,
>
> *Mehar Un Nissa*
> Research Scholar,
> Proteomics Lab.
> Department of Biosciences and Bioengineering,
> Indian Institute of Technology, Bombay-400076
>
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> .
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[spctools-discuss] Query related to filtering PTMprophet results in TPP

[Mehar Un Nissa]

Hello Sir/Madam,
We used TPP and PTMprophet for PTM analysis.
PTM  taken (Phosphorylation- STY)

After comet followed by PTM prophet analysis this is how pepxml view is:
We are getting columns of probability and some other columns.
[image: C1.PNG]
PROBLEM: In the filtering options we are not getting option of *peptideprophet
probability and PTMprophet probabilities (although iprophet probability
option is coming). *
[image: C2.PNG]

Could you please help me solve this.


Looking forward to hearing from you
Thanks and regards,

*Mehar Un Nissa*
Research Scholar,
Proteomics Lab.
Department of Biosciences and Bioengineering,
Indian Institute of Technology, Bombay-400076

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