Re: [aroma.affymetrix] Can aroma.affymertix handle the data of agilent chip?

2010-10-24 Thread Henrik Bengtsson
Hi. On Wed, Oct 13, 2010 at 5:24 PM, Yue Hu yuehu.m...@gmail.com wrote: Hi,  Just shift from affymetrix to agilent recently and since I prefer the plot generated by aroma.affymetrix I am just wondering if aroma.affymetrix is able to handle agilent chip data in some way. When you say plot

Re: [aroma.affymetrix] Exception: None of the data directories exist

2010-10-24 Thread Henrik Bengtsson
Hi. On Thu, Oct 14, 2010 at 4:38 AM, allab asphod...@googlemail.com wrote: Dear aroma users/authors, i am doing now Affy 6.0 SNP data analysis and my goal is to become BAF values so that i can further use them with the method SOMATICS (Assie'08). I have not used from the very beginning the

Re: [aroma.affymetrix] Re: Trying to create a CDF file from an R package/environment problems

2010-10-24 Thread Henrik Bengtsson
Thanks for follow up/reporting back to the list. /Henrik On Thu, Oct 14, 2010 at 12:03 PM, Fong fongchunc...@gmail.com wrote: For those interested I got a reply from the makers of the CDF files and apparently it is an issue on their end.  Here is their reply: We have been studying the