Hi.
On Mon, Jul 26, 2010 at 12:00 PM, cstratowa
christian.strat...@vie.boehringer-ingelheim.com wrote:
Dear Henrik,
Maybe, my explanation was not clear enough:
I have created my own package based on S4 classes, where one subclass
is AromaSNP with slots celset, normset, plmset, effectset as
Hi Steven.
On Mon, Jul 26, 2010 at 9:00 PM, Steven Bosinger
steven.bosin...@gmail.com wrote:
Hi,
I'm new to aroma and bioC in general, so these are probably a very
straightforward questions:
I am using aroma to get QC on some Human Affymetrix Gene arrays.
1. To keep it consistent with
Hi Fong(?).
On Sat, Jul 24, 2010 at 2:10 AM, Fong fongchunc...@gmail.com wrote:
Hi,
I've used aroma.affymetrix to generate and extract the probeset
summaries (chip effects) from a set of Human Exon array samples I
have. And then performed batch adjustment on these probeset summaries
using
Hi,
I am trying to analyze Mouse Exon 1.0 st array data using
aroma.affymetrix and FIRMA model to find the splicing variants.
CDF file : MoEx-1_0-st-v1,coreR1,A20080718,MR.cdf ( downloaded from
the aroma.affymetrix website)
CEL files: 12 Mouse Exon 1.0 st arrays. ( 6 arrays for each strain
Hi all,
I have a batch of 107 mice exon arrays for which I computed FIRMA
scores and I got many NaN, Inf and 0 values which disable further
analysis based on log FIRMA values for some probesets. I was wondering
if this is a known issue or I am the only one to get these results.
Here is the code
Hi Sundar,
I've been leaving your messages to the FIRMA experts, because they can
better answer you questions. However, I'll give a quick reply to the
things I can answer.
On Mon, Aug 2, 2010 at 6:59 PM, Sundar sundar...@gmail.com wrote:
Hi,
I am trying to analyze Mouse Exon 1.0 st
Hi,
I'll leave the details to FIRMA experts, but you are using really
large values of argument 'ram'. It might be that you ran out of
memory (the you got an error message). If you used cut'n'paste,
instead of source(), to do the analysis, it might be that one of the
fit() methods was
Hi Henrik, Thanks for your answer.
It might be that you ran out of
memory (the you got an error message). If you used cut'n'paste,
instead of source(), to do the analysis, it might be that one of the
fit() methods was preemptively finished. If so, not all units have
been fitted. Rerun
