Hi Dario,
Pierre Neuvial has kindly provided a more up-to-date vignette for
doing paired total copy number analysis. You find it at:
http://aroma-project.org/vignettes/pairedTotalCopyNumberAnalysis
See if that helps
/Henrik
On Wed, Sep 22, 2010 at 5:05 PM, Dario Strbenac
Hello,
I see the vignette for absolute copy number analysis, where you compare to a
HapMap sample pool, but I'm not sure how to do a control / treatment analysis.
I have 1 Affymetrix SNP6 .CEL of a cancer sample and 1 of a normal sample. The
documentation is brief or non-existent for most of
