Hi Dario,
Pierre Neuvial has kindly provided a more up-to-date vignette for
doing paired total copy number analysis. You find it at:
http://aroma-project.org/vignettes/pairedTotalCopyNumberAnalysis
See if that helps
/Henrik
On Wed, Sep 22, 2010 at 5:05 PM, Dario Strbenac
d.strbe...@garvan.org.au wrote:
Hello,
I see the vignette for absolute copy number analysis, where you compare to a
HapMap sample pool, but I'm not sure how to do a control / treatment
analysis. I have 1 Affymetrix SNP6 .CEL of a cancer sample and 1 of a normal
sample. The documentation is brief or non-existent for most of the functions
that appear in the total copy number vignette. Can anyone share a workflow
for a relative analysis ?
--
Dario Strbenac
Research Assistant
Cancer Epigenetics
Garvan Institute of Medical Research
Darlinghurst NSW 2010
Australia
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When reporting problems on aroma.affymetrix, make sure 1) to run the latest
version of the package, 2) to report the output of sessionInfo() and
traceback(), and 3) to post a complete code example.
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