Re: [Avogadro-devel] [Avogadro-Discuss] XTALOPT hangs if server connection lost

2015-08-21 Thread Cohen, Ronald
Unfortunately the CLI is not correct! I get: Warning: Optimizer::Update: Error loading structure at /home/ucfbcoh/XTALOPT/C12H12/200GPa//3x00051/ and when I look at that directory I find on the client: ls /home/ucfbcoh/XTALOPT/C12H12/200GPa//3x00051/ 3x00051 job.sh

Re: [Avogadro-devel] [Avogadro-Discuss] XTALOPT hangs if server connection lost

2015-08-21 Thread Cohen, Ronald
I think the attached code I edited fixes this problem. Ron --- Ronald Cohen Geophysical Laboratory Carnegie Institution 5251 Broad Branch Rd., N.W. Washington, D.C. 20015 rco...@carnegiescience.edu office: 202-478-8937 skype: ronaldcohen https://twitter.com/recohen3

Re: [Avogadro-devel] Symmetry element rendering

2015-08-21 Thread Marcus D. Hanwell
On Wed, Aug 19, 2015 at 11:26 AM, Marcus Johansson mcode...@gmail.com wrote: Hi Was wondering if anyone has some input on rendering symmetry elements in Avogadro v2. There is a need for “disc” (mirror plane) and “vector” (rotation axis) geometries as well as alpha in order to make things

Re: [Avogadro-devel] Symmetry element rendering

2015-08-21 Thread Marcus Johansson
Any chance someone could apply this patch to the avogadro v1 master symmetry extension /libmsym? https://github.com/mcodev31/libmsym/commit/b2945fa8a5d7027f6afd8297af465f61981b9ba3.patch I don’t have a fork and pressed for time. It won’t build with g++ only with clang (requires VLA). Might