Re: [basedb-devel] Illumina Bead Summary Files

2009-03-09 Thread David Waring
Thanks all, I knew that skipping them 'worked' but it is nice to know that this is the right thing to do. On Mar 9, 2009, at 3:48 AM, Markus Ringnér wrote: > Pawel Sztromwasser wrote: >> We experienced that as well. I believe that I have checked these >> probes >> and they were controls, so

Re: [basedb-devel] Illumina Bead Summary Files

2009-03-09 Thread Markus Ringnér
Pawel Sztromwasser wrote: > We experienced that as well. I believe that I have checked these probes > and they were controls, so they can be ignored. > All of them are not necessarily controls since the number of probes missing in the bgx-files may change between Illumina revisions of bgx-file

Re: [basedb-devel] Illumina Bead Summary Files

2009-03-09 Thread Pawel Sztromwasser
We experienced that as well. I believe that I have checked these probes and they were controls, so they can be ignored. Pawel Nicklas Nordborg wrote: > David Waring wrote: >> I have recently installed the Illumina Plugins and have imported >> features for several Array Designs. We modified our

Re: [basedb-devel] Illumina Bead Summary Files

2009-03-09 Thread Nicklas Nordborg
David Waring wrote: > I have recently installed the Illumina Plugins and have imported > features for several Array Designs. We modified our config to > generate the Bead Summary files and I have imported the data. Oddly > have found that the Bead Summary files contain some rows with > illu

[basedb-devel] Illumina Bead Summary Files

2009-03-06 Thread David Waring
I have recently installed the Illumina Plugins and have imported features for several Array Designs. We modified our config to generate the Bead Summary files and I have imported the data. Oddly have found that the Bead Summary files contain some rows with illumina codes that are not in th