Re: [basedb-devel] Tab2Mage exporter plugin

2010-02-15 Thread Nicklas Nordborg
On 2010-02-15 11:26, Gildas Le Corguillé wrote: > Hi Jari, > > I watched this warning and tried to fix it. But I don't know enough Base > to understand this warning. > It was there before I worked on the plugin. It's when it wants to > retrieve LabeledExtract from Hybridization : > > ItemResu

Re: [basedb-devel] Tab2Mage exporter plugin

2010-02-15 Thread Gildas Le Corguillé
Hi Jari, I watched this warning and tried to fix it. But I don't know enough Base to understand this warning. It was there before I worked on the plugin. It's when it wants to retrieve LabeledExtract from Hybridization : ItemResultList labeledExtracts = (ItemResultList) rba.getScan(

Re: [basedb-devel] Tab2Mage exporter plugin

2010-02-11 Thread Jari Häkkinen
Forgot this in my previous post. I have committed the code to the repository. Building Tab2MageExporter causes a few warnings of which all but is complaining about use of deprecated BASE2Core calls. There is one warning about unchecked cast: src/uk/ac/ebi/nugo/plugins/ta2mageexport/Tab2MageVal

Re: [basedb-devel] Tab2Mage exporter plugin

2010-02-11 Thread Jari Häkkinen
Committed in http://baseplugins.thep.lu.se/changeset/1188 and the plug-in wiki page is updated accordingly. Thanks, Jari On 2/9/10 2:29 PM, Gildas Le Corguillé wrote: > Hi, > > I join you my patch for Tab2MageExporter. Is it what you expected in > your email ? > > Until now, I've never partic

Re: [basedb-devel] Tab2Mage exporter plugin

2010-02-05 Thread Nicklas Nordborg
On 2010-02-05 10:07, Gildas Le Corguillé wrote: > For the last point, I had to use the method RawBioAssay.setFileSet(). > Which is implement in a newer BASE2Core than Tab2Mage_exporter > previously used. > But I don't know from which version of Base, this method appear ? Then > if we propose my

Re: [basedb-devel] Tab2Mage exporter plugin

2010-02-05 Thread Jari Häkkinen
Hi Gildas, Great to see work done on the Tab2Mage exporter. The original author has left for other tasks and the Tab2Mage code is currently without a maintainer but lives under the GPL2 license so it is free to modify and improve. You can submit your patches to me and I make sure that they are

[basedb-devel] Tab2Mage exporter plugin

2010-02-05 Thread Gildas Le Corguillé
Dear colleagues, I had a problem with Tab2Mage exporter plugin about polling. Then to know if it was my fault or its fault, I downloaded the sources to study the pooling implications. And finally, I tried to fix what I thought be a bug. Now Tab2Mage_exporter : - supports pooling - creates a