Re: [basedb-devel] BASE 1.2.18 or so

2007-08-09 Thread Charles Girardot
On Aug 8, 2007, at 6:17 PM, Carl Troein wrote: > Kjell Petersen wrote: > >> Charles Girardot wrote: If so, which of the files in the sql directory should be applied, and are there other database changes necessary? >>> it is normally base_mysql_new_tables_for_v13.sql for the db >>>

[basedb-devel] Writing an external importer/exporter

2007-08-09 Thread Carl Mäsak
I'm just starting out implementing a data link between BASE2 and Bioclipse. I have a few questions. I want to do the programmatic equivalent of logging in and displaying the bioassay sets of a given experiment à la list_bioassaysets.jsp -- without the web/JSP part. Reading the docs, I get differe

Re: [basedb-devel] Writing an external importer/exporter

2007-08-09 Thread Carl Mäsak
Nicklas (>), Carl (>>): > > Reading the docs, I get different impressions -- do I want to > > implement a BASE2 plug-in for this, or is such a plug-in too tied to > > BASE2 to function within a plug-in in Bioclipse? If the latter, what > > approved ways are there to interact with BASE2 from without

Re: [basedb-devel] Writing an external importer/exporter

2007-08-09 Thread Nicklas Nordborg
Carl Mäsak wrote: > I'm just starting out implementing a data link between BASE2 and > Bioclipse. I have a few questions. > > I want to do the programmatic equivalent of logging in and displaying > the bioassay sets of a given experiment à la list_bioassaysets.jsp -- > without the web/JSP part. >

[basedb-devel] Can I do conditional assignments with formulas?

2007-08-09 Thread vegard nygaard
Hi. Can I put a "if" condition in a formula? It does not look like, but I hope I have overseen something. What I want is something like this (approx. syntax): if( ch(1) < 100) ) 1: 100 else 1: ch(1) In English: Assign 100 to inten

Re: [basedb-devel] Can I do conditional assignments with formulas?

2007-08-09 Thread Nicklas Nordborg
vegard nygaard wrote: > Hi. > Can I put a "if" condition in a formula? It does not look like, but I hope I > have overseen something. No, it is not possible. I think, however, that the underlying JEP parser supports it we just don't have any code to translate it to SQL. The syntax to use for JEP