Re: [base] regular expression and wildcards

2007-11-05 Thread Jari Häkkinen
I moved it to the BASE core ticketing system as http://base.thep.lu.se/ticket/811 Jari Nicklas Nordborg wrote: > vegard nygaard wrote: >> Thanks for quick answers. >> >> I would like column mappings to support wildcards or regular expressions. >> Not a big thing, but I took the liberty to add i

Re: [base] regular expression and wildcards

2007-11-05 Thread Nicklas Nordborg
vegard nygaard wrote: > Thanks for quick answers. > > I would like column mappings to support wildcards or regular expressions. > Not a big thing, but I took the liberty to add it as a ticket. > Implement it if it is cheap and when you have time. You added it to the wrong site. It is a BASE core

Re: [base] regular expression and wildcards

2007-11-02 Thread vegard nygaard
basedb-users- > [EMAIL PROTECTED] On Behalf Of Nicklas Nordborg > Sent: Thursday, November 01, 2007 6:22 PM > To: BASE ML > Subject: Re: [base] regular expression and wildcards > > vegard nygaard wrote: > > I also have similar problems. > > Some of my gpr files have d

Re: [base] regular expression and wildcards

2007-11-01 Thread Jari Häkkinen
Nicklas Nordborg wrote: > vegard nygaard wrote: >> "F633 Median" not working but giving a funny error message: Error: For input >> string: ""F633 MEdian"" on line..., (The E's in the input has been >> uppercased!) > > That is because string like '1.23e-2' are not recognised as numbers > unless th

Re: [base] regular expression and wildcards

2007-11-01 Thread Nicklas Nordborg
vegard nygaard wrote: > I also have similar problems. > Some of my gpr files have different numbers than 635 and 532 as supplied in > the "GenePix raw data import (cy5/cy3)" config shipped with base2. > > So in the base2 config the column mapping is > \F635 Median\ > But my column is named F633 Me

Re: [base] regular expression and wildcards

2007-11-01 Thread vegard nygaard
I also have similar problems. Some of my gpr files have different numbers than 635 and 532 as supplied in the "GenePix raw data import (cy5/cy3)" config shipped with base2. So in the base2 config the column mapping is \F635 Median\ But my column is named F633 Median how will that be using wildcar

Re: [base] regular expression and wildcards

2006-08-14 Thread Jason
Hi, I recently presented base in a group meeting here at the Broad Institute. I thought it would be interesting to combine with our public access microarray data base, ChemBank. It seems natural that one would want to provide free tools to access and manage the data we are providing to the pu

Re: [base] regular expression and wildcards

2006-08-14 Thread Nicklas Nordborg
Reha Yildirimman wrote: > Hello, > > I am trying to configure a raw data importer plugin and want to use > wildcards for reading raw data files. The dataheader inside those files > always contains some changing elements and I would like to use base2 > directly on the raw data without preprocess

[base] regular expression and wildcards

2006-08-14 Thread Reha Yildirimman
Hello, I am trying to configure a raw data importer plugin and want to use wildcards for reading raw data files. The dataheader inside those files always contains some changing elements and I would like to use base2 directly on the raw data without preprocessing them beforehand - so far no wil