Hi,
fair enough.
The nuIDs are not implemented by Illumina but by the Bioconductor
package lumi to resolve some discrepancy in the annotation of different
array versions. As far as I remember it is based on the MD5 hash of the
actual probe sequence. Bioconductor packages can deal with both nuID
Renaud Gaujoux wrote:
> Hi,
>
> thanks for your reply. It worked perfectly adding the File type.
> My questions are then:
> - why do I need to give the file type when the extension 'cel' is
> defined in the Data file types and related to the type 'CEL file' (I've
> tried with the files' extensio
Renaud Gaujoux wrote:
> Hi,
>
> Two things:
> - I've just installed BASE 2.11 and I'm trying without success to import
> CEL files in batch mode using the core plugin "Raw bioassay Importer".
> Even with a single file in the text file given in the configuration it
> doesn't work completly.
> ->
My (probably unique) use case is centred more around adding the
publication/pubmed information to a set of (say, two to five) experiments
which all reference the same publication. The rawbioassays linkage is no
problem at all to do manually two to five times. The abstract, authors,
affiliation,
When I was trying all these new imports I always work in one project.
After importing the RasBioAssays, I simply select all rawbioassays in
that project and create an experiment from the tab. And you get all
rawbioassays automatically in that experiment.
If you have attached raw data files to y
Well, we had to stop somewhere. Our use cases include importing hundreds
of samples, extracts, etc. down to raw bioassays, everything put into a
single (or at least only a few) experiments. Since the raw data import
also has to be done manually for each raw bioassay, we didn't see any
real bene
Ana Conesa wrote:
> Dear list
>
> We are setting up BASE2 for storage of our microarray data. We have
> finally managed to create plug-ins for reporters, arrays and raw data
> and we would like now to have a way in import in batch our existing
> experiments. I have been checking the base mailin
